Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46843 * 2 1 4 4 C 1.52997 * 109.46913 * 120.00079 * 2 1 3 5 5 C 1.53003 * 109.46776 * 185.00369 * 4 2 1 6 6 N 1.46505 * 109.47172 * 180.02562 * 5 4 2 7 7 C 1.34775 * 120.00040 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99824 * 5.13046 * 7 6 5 9 9 C 1.47236 * 119.99551 * 185.12889 * 7 6 5 10 10 C 1.37001 * 127.19356 * 354.39676 * 9 7 6 11 11 N 1.33316 * 106.37230 * 180.24225 * 10 9 7 12 12 N 1.28512 * 109.44185 * 359.55435 * 11 10 9 13 13 N 1.28720 * 110.63474 * 0.46297 * 12 11 10 14 14 C 1.46493 * 126.03591 * 179.72150 * 13 12 11 15 15 N 1.46498 * 109.47281 * 240.00470 * 2 1 3 16 16 C 1.34769 * 120.00086 * 84.99711 * 15 2 1 17 17 O 1.21279 * 120.00564 * 359.97438 * 16 15 2 18 18 C 1.50703 * 120.00123 * 180.02562 * 16 15 2 19 19 S 1.80995 * 109.47407 * 179.97438 * 18 16 15 20 20 C 1.76205 * 100.00181 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99914 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00076 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00038 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99960 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47774 * 59.99533 * 24 22 20 26 26 H 1.48502 * 109.47319 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46968 * 299.99390 * 24 22 20 28 28 H 1.08997 * 109.46547 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47177 * 300.00010 * 1 2 3 30 30 H 1.08996 * 109.46827 * 59.99546 * 1 2 3 31 31 H 1.08994 * 109.47289 * 65.00344 * 4 2 1 32 32 H 1.08998 * 109.47208 * 304.99805 * 4 2 1 33 33 H 1.08994 * 109.47231 * 59.99940 * 5 4 2 34 34 H 1.09004 * 109.47096 * 300.00012 * 5 4 2 35 35 H 0.97004 * 119.99318 * 359.97438 * 6 5 4 36 36 H 1.07999 * 126.81125 * 359.97235 * 10 9 7 37 37 H 1.09003 * 109.46887 * 274.07070 * 14 13 12 38 38 H 1.09000 * 109.47346 * 34.06420 * 14 13 12 39 39 H 1.08992 * 109.47452 * 154.07138 * 14 13 12 40 40 H 0.97003 * 119.99519 * 265.00104 * 15 2 1 41 41 H 1.09000 * 109.46814 * 300.00058 * 18 16 15 42 42 H 1.09000 * 109.46975 * 59.99877 * 18 16 15 43 43 H 0.97001 * 119.99946 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3044 2.5096 7 6 5.3741 -1.3397 2.7752 8 8 6.1520 -0.7203 2.0750 9 6 5.8753 -2.1283 3.9131 10 6 5.1310 -2.7898 4.8540 11 7 6.0006 -3.3581 5.6896 12 7 7.1981 -3.0901 5.3079 13 7 7.1837 -2.3543 4.2519 14 6 8.3586 -1.8479 3.5383 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8582 1.1585 -2.4117 18 6 2.6490 -0.7286 -3.5877 19 16 2.7092 0.4343 -4.9734 20 6 3.3126 -0.6308 -6.2408 21 1 3.5220 -1.6672 -6.0208 22 6 3.5188 -0.1378 -7.5218 23 7 3.2632 1.1253 -7.7900 24 14 4.1578 -1.2672 -8.8655 25 1 3.2065 -2.3904 -9.0622 26 1 4.2902 -0.5037 -10.1323 27 1 5.4843 -1.8054 -8.4704 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7517 -1.7715 1.2055 32 1 1.6054 -0.2617 2.1369 33 1 3.8532 0.4370 1.3574 34 1 3.9995 -1.0727 0.4259 35 1 3.4259 -1.7359 3.1105 36 1 4.0535 -2.8374 4.9105 37 1 8.6871 -0.9145 3.9956 38 1 9.1621 -2.5823 3.5941 39 1 8.1009 -1.6700 2.4943 40 1 2.2491 -1.6317 -1.1526 41 1 3.6481 -1.1211 -3.3986 42 1 1.9761 -1.5504 -3.8326 43 1 3.4076 1.4699 -8.6851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076334597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = -12.597586 kcal Electronic energy + Delta-G solvation = -26024.655093 eV Core-core repulsion = 22039.100084 eV Total energy + Delta-G solvation = -3985.555009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.40554 -40.93569 -40.52840 -37.70393 -36.07096 -35.40222 -34.58338 -33.28404 -32.50953 -30.37672 -29.64974 -28.99689 -27.65325 -25.68345 -24.19914 -23.13776 -22.53947 -21.74181 -21.44517 -19.84933 -19.23254 -17.97167 -17.88950 -17.82491 -17.31325 -16.93588 -16.87379 -16.43651 -16.35652 -15.87100 -15.62373 -15.22177 -14.91325 -14.75165 -14.45307 -14.36568 -14.29571 -13.98815 -13.89687 -13.29811 -13.20743 -13.16969 -12.99381 -12.86852 -12.61260 -12.43449 -12.40334 -12.24286 -11.88563 -11.73212 -11.38275 -11.29288 -11.12960 -10.87780 -10.70194 -10.27040 -10.24284 -10.05112 -8.65841 -8.34459 -6.12210 -0.19334 1.03324 1.18098 1.27818 1.43345 1.47269 1.57262 1.66736 1.91964 1.97785 2.26890 2.34967 2.99435 3.25631 3.33266 3.37773 3.68583 3.74698 3.88339 4.01524 4.06864 4.12427 4.17195 4.31176 4.47284 4.50258 4.51243 4.52869 4.60681 4.68567 4.86249 4.92384 4.93340 5.04721 5.16040 5.25521 5.27184 5.38641 5.41444 5.60592 6.19528 6.28785 6.56422 6.94349 7.06722 7.21031 7.31456 8.74383 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.002038 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.235442 B =13735.866461 C =15356.283905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.065 0.935 4 C -0.120 4.120 5 C 0.119 3.881 6 N -0.689 5.689 7 C 0.595 3.405 8 O -0.568 6.568 9 C -0.082 4.082 10 C 0.018 3.982 11 N -0.303 5.303 12 N -0.083 5.083 13 N -0.255 5.255 14 C 0.068 3.932 15 N -0.709 5.709 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.263 1.263 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.027 0.973 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.424 0.576 36 H 0.243 0.757 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.415 0.585 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 -10.953 27.696 29.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.084 0.916 4 C -0.158 4.158 5 C -0.004 4.004 6 N -0.342 5.342 7 C 0.379 3.621 8 O -0.447 6.447 9 C -0.217 4.217 10 C -0.144 4.144 11 N -0.164 5.164 12 N -0.063 5.063 13 N -0.052 5.052 14 C -0.071 4.071 15 N -0.364 5.364 16 C 0.321 3.679 17 O -0.443 6.443 18 C -0.283 4.283 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.047 0.953 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.263 0.737 36 H 0.259 0.741 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.252 0.748 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.151 -9.144 28.027 29.503 hybrid contribution 0.193 -1.365 -1.682 2.174 sum 1.344 -10.509 26.345 28.396 Atomic orbital electron populations 1.22129 0.94049 1.03237 1.02238 1.20987 0.94874 0.96939 0.83505 0.91649 1.22028 0.92113 1.03934 0.97698 1.21440 0.95446 0.97048 0.86480 1.45408 1.05527 1.56023 1.27250 1.16785 0.83591 0.79814 0.81926 1.90851 1.56944 1.45494 1.51401 1.22064 0.85638 1.10367 1.03632 1.24613 1.03062 0.95981 0.90715 1.74891 0.95410 1.21432 1.24716 1.78291 1.18256 1.09761 1.00029 1.47965 1.08059 1.30957 1.18226 1.22798 0.83985 1.02344 0.98009 1.45906 1.67512 1.14530 1.08449 1.19980 0.76663 0.86554 0.84736 1.90693 1.50647 1.17780 1.85174 1.23393 1.05361 1.03222 0.96295 1.85564 1.86659 1.17452 1.02855 1.23169 1.50956 0.98448 0.96868 0.89981 1.26128 0.95120 0.97210 1.00773 1.70178 1.46784 1.15463 1.22297 0.85017 0.79060 0.77787 0.76219 1.18580 1.20426 1.18764 0.90451 0.89308 0.95332 0.87248 0.86441 0.92513 0.92004 0.73718 0.74116 0.87315 0.85963 0.87265 0.74775 0.87610 0.87262 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.48 71.98 0.68 -1.72 16 2 C 0.14 2.29 2.57 44.99 0.12 2.41 16 3 H 0.07 1.47 7.58 -2.39 -0.02 1.45 16 4 C -0.12 -0.71 4.87 30.59 0.15 -0.57 16 5 C 0.12 1.40 5.57 86.38 0.48 1.88 16 6 N -0.69 -5.70 5.55 -466.56 -2.59 -8.29 16 7 C 0.59 9.29 7.79 86.61 0.67 9.96 16 8 O -0.57 -13.52 14.85 -4.07 -0.06 -13.58 16 9 C -0.08 -1.20 6.98 40.41 0.28 -0.91 16 10 C 0.02 0.20 11.54 84.18 0.97 1.17 16 11 N -0.30 -5.69 12.35 -57.51 -0.71 -6.40 16 12 N -0.08 -1.66 13.14 37.02 0.49 -1.17 16 13 N -0.25 -4.25 3.79 -356.79 -1.35 -5.61 16 14 C 0.07 0.77 10.98 127.77 1.40 2.18 16 15 N -0.71 -14.83 4.53 -442.54 -2.00 -16.83 16 16 C 0.54 18.49 7.81 87.66 0.68 19.17 16 17 O -0.56 -25.11 15.52 -3.03 -0.05 -25.16 16 18 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 19 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 20 C -0.55 -31.11 9.50 67.95 0.65 -30.47 16 21 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 24 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.96 7.75 -2.38 -0.02 0.94 16 35 H 0.42 0.01 7.51 -92.71 -0.70 -0.69 16 36 H 0.24 0.04 7.56 -2.91 -0.02 0.02 16 37 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 1.49 6.36 -2.39 -0.02 1.47 16 40 H 0.42 5.79 8.60 -92.71 -0.80 4.99 16 41 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 42 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -90.03 386.04 1.44 -88.60 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -0.43 Total: 8.52 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 7.00 Total: -0.34 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -5.88 Total: -94.00 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.11 Total: -38.73 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -90.03 1.44 -88.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076334597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.000 kcal (2) G-P(sol) polarization free energy of solvation -90.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds