Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21598 * 120.00059 * 359.97438 * 7 6 5 9 9 C 1.47521 * 119.99870 * 179.97438 * 7 6 5 10 10 C 1.36597 * 125.76917 * 179.71241 * 9 7 6 11 11 N 1.34817 * 106.83944 * 179.90004 * 10 9 7 12 12 C 1.46499 * 126.59524 * 180.10786 * 11 10 9 13 13 N 1.40212 * 106.80878 * 0.36142 * 11 10 9 14 14 N 1.28757 * 108.36796 * 359.76708 * 13 11 10 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.08000 * 126.58292 * 0.04351 * 10 9 7 37 37 H 1.08996 * 109.47448 * 270.27336 * 12 11 10 38 38 H 1.08999 * 109.47045 * 30.27986 * 12 11 10 39 39 H 1.08999 * 109.46914 * 150.27635 * 12 11 10 40 40 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1603 -0.7984 2.0223 9 6 5.8656 -2.0349 3.9801 10 6 7.1731 -2.1480 4.3589 11 7 7.1870 -2.8511 5.5092 12 6 8.3685 -3.2207 6.2926 13 7 5.8538 -3.1654 5.8084 14 7 5.1034 -2.6693 4.8873 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.9995 -0.9271 -8.4604 24 14 3.1831 1.6604 -7.8954 25 1 4.4006 2.4739 -7.6484 26 1 2.7796 1.7929 -9.3185 27 1 2.0819 2.1397 -7.0220 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 8.0310 -1.7487 3.8383 37 1 8.7458 -4.1838 5.9488 38 1 9.1405 -2.4618 6.1659 39 1 8.0982 -3.2917 7.3462 40 1 2.2491 -1.6319 -1.1524 41 1 3.6539 -1.1197 -3.3923 42 1 1.9842 -1.5494 -3.8349 43 1 4.1478 -0.5816 -9.3546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076365298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = 15.716172 kcal Electronic energy + Delta-G solvation = -25718.559045 eV Core-core repulsion = 21734.231813 eV Total energy + Delta-G solvation = -3984.327232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.66396 -39.84567 -39.33917 -36.66497 -35.23304 -34.62551 -32.40936 -31.98127 -31.44777 -29.57376 -28.60087 -28.20402 -25.58228 -24.74024 -23.03557 -22.63244 -21.62350 -20.77003 -20.38208 -18.62452 -17.80796 -16.80805 -16.64475 -16.60270 -16.44567 -15.95802 -15.48698 -15.07338 -15.02863 -14.92163 -14.45786 -14.36020 -13.93297 -13.76659 -13.58660 -13.51321 -13.33879 -12.94051 -12.76441 -12.62706 -12.22292 -12.01958 -11.81583 -11.76712 -11.54441 -11.23281 -11.11005 -10.97703 -10.91658 -10.56818 -10.44372 -9.82666 -9.80973 -9.46885 -9.35632 -8.99676 -8.94192 -8.46382 -6.87896 -6.25836 -3.97115 0.64462 1.27389 1.51689 2.77188 2.80422 2.95566 3.01645 3.33424 3.37194 3.53293 3.69237 3.75261 3.82199 4.27061 4.35343 4.36167 4.45803 4.46975 4.65087 4.66843 4.73910 4.81204 4.86714 5.13268 5.22811 5.24013 5.27143 5.36167 5.38453 5.57630 5.64173 5.75346 5.78865 5.81206 5.97001 6.06196 6.08549 6.15420 6.60611 7.08987 7.47006 7.64531 7.86026 7.97253 8.44955 8.53541 9.20478 10.83407 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.001896 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.137924 B =14767.520770 C =16073.242525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.117 3.883 6 N -0.715 5.715 7 C 0.603 3.397 8 O -0.532 6.532 9 C -0.102 4.102 10 C 0.096 3.904 11 N -0.364 5.364 12 C 0.086 3.914 13 N -0.065 5.065 14 N -0.206 5.206 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.519 6.519 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.408 0.592 36 H 0.207 0.793 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 -5.617 32.713 33.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.110 0.890 4 C -0.177 4.177 5 C -0.006 4.006 6 N -0.367 5.367 7 C 0.387 3.613 8 O -0.407 6.407 9 C -0.242 4.242 10 C -0.061 4.061 11 N -0.148 5.148 12 C -0.055 4.055 13 N -0.046 5.046 14 N -0.080 5.080 15 N -0.388 5.388 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.224 0.776 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.370 -3.979 32.890 33.301 hybrid contribution 1.005 -1.077 -0.609 1.594 sum 4.376 -5.056 32.281 32.966 Atomic orbital electron populations 1.22172 0.94939 1.02208 1.02815 1.20791 0.94208 0.97706 0.83117 0.89004 1.22120 0.94453 1.02303 0.98810 1.21480 0.93751 0.98064 0.87311 1.45762 1.07061 1.56615 1.27235 1.16734 0.82657 0.79133 0.82800 1.90870 1.55535 1.45897 1.48446 1.21478 0.90769 1.10926 1.01022 1.23440 1.00280 0.94459 0.87942 1.50393 1.09420 1.37257 1.17746 1.22242 0.83118 1.03044 0.97063 1.82011 0.83046 1.20995 1.18549 1.74607 1.26800 1.06540 1.00018 1.46096 1.69254 1.13991 1.09493 1.20260 0.76826 0.87204 0.83832 1.90696 1.48511 1.15697 1.84400 1.23289 1.04456 1.03465 0.96351 1.84769 1.86916 1.16869 1.02987 1.22326 1.50168 0.98812 0.95542 0.89407 1.24715 0.93383 0.98283 0.94955 1.69942 1.43326 1.35811 1.02672 0.86731 0.81134 0.84883 0.79075 1.19209 1.19989 1.15923 0.91503 0.92432 0.91794 0.89534 0.90397 0.90566 0.90778 0.75696 0.77626 0.89008 0.88189 0.87954 0.76718 0.88494 0.88520 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 2 C 0.15 1.49 2.57 -67.93 -0.17 1.32 16 3 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 4 C -0.14 -0.96 4.87 -26.73 -0.13 -1.09 16 5 C 0.12 1.07 5.56 -4.04 -0.02 1.05 16 6 N -0.72 -6.32 5.55 -61.35 -0.34 -6.66 16 7 C 0.60 6.61 7.82 -12.48 -0.10 6.51 16 8 O -0.53 -7.54 16.86 5.28 0.09 -7.45 16 9 C -0.10 -0.97 6.99 -83.55 -0.58 -1.55 16 10 C 0.10 0.64 11.31 -16.83 -0.19 0.45 16 11 N -0.36 -2.15 4.03 -67.86 -0.27 -2.42 16 12 C 0.09 0.07 11.51 59.85 0.69 0.76 16 13 N -0.07 -0.60 13.78 60.35 0.83 0.23 16 14 N -0.21 -2.04 12.04 32.85 0.40 -1.65 16 15 N -0.73 -8.84 4.53 -53.80 -0.24 -9.08 16 16 C 0.53 9.28 7.81 -10.98 -0.09 9.19 16 17 O -0.52 -10.98 15.52 5.55 0.09 -10.90 16 18 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 19 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 20 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 21 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.82 13.97 55.49 0.78 -26.04 16 24 Si 0.86 22.02 27.74 -169.99 -4.72 17.31 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.81 7.75 -51.93 -0.40 0.41 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.41 2.87 8.16 -40.82 -0.33 2.54 16 36 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 38 H 0.10 -0.14 8.14 -51.93 -0.42 -0.57 16 39 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.40 3.78 8.60 -40.82 -0.35 3.43 16 41 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 389.21 15.07 5.87 5.87 Total: -1.00 -39.05 389.21 -5.46 -44.51 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.13 Total: 0.82 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 0.19 Total: 1.09 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 1.14 Total: -45.63 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.18 Total: -18.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.05 -5.46 -44.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076365298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.225 kcal (2) G-P(sol) polarization free energy of solvation -39.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds