Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21598 * 120.00059 * 359.97438 * 7 6 5 9 9 C 1.47521 * 119.99870 * 179.97438 * 7 6 5 10 10 C 1.36597 * 125.76917 * 179.71241 * 9 7 6 11 11 N 1.34817 * 106.83944 * 179.90004 * 10 9 7 12 12 C 1.46499 * 126.59524 * 180.10786 * 11 10 9 13 13 N 1.40212 * 106.80878 * 0.36142 * 11 10 9 14 14 N 1.28757 * 108.36796 * 359.76708 * 13 11 10 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.08000 * 126.58292 * 0.04351 * 10 9 7 37 37 H 1.08996 * 109.47448 * 270.27336 * 12 11 10 38 38 H 1.08999 * 109.47045 * 30.27986 * 12 11 10 39 39 H 1.08999 * 109.46914 * 150.27635 * 12 11 10 40 40 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1603 -0.7984 2.0223 9 6 5.8656 -2.0349 3.9801 10 6 7.1731 -2.1480 4.3589 11 7 7.1870 -2.8511 5.5092 12 6 8.3685 -3.2207 6.2926 13 7 5.8538 -3.1654 5.8084 14 7 5.1034 -2.6693 4.8873 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.9995 -0.9271 -8.4604 24 14 3.1831 1.6604 -7.8954 25 1 4.4006 2.4739 -7.6484 26 1 2.7796 1.7929 -9.3185 27 1 2.0819 2.1397 -7.0220 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 8.0310 -1.7487 3.8383 37 1 8.7458 -4.1838 5.9488 38 1 9.1405 -2.4618 6.1659 39 1 8.0982 -3.2917 7.3462 40 1 2.2491 -1.6319 -1.1524 41 1 3.6539 -1.1197 -3.3923 42 1 1.9842 -1.5494 -3.8349 43 1 4.1478 -0.5816 -9.3546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076365298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = -16.095258 kcal Electronic energy + Delta-G solvation = -25719.938492 eV Core-core repulsion = 21734.231813 eV Total energy + Delta-G solvation = -3985.706679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.23356 -40.90342 -40.38505 -37.67324 -35.82007 -35.42139 -34.66845 -33.08420 -32.13353 -30.50539 -29.73378 -28.58635 -27.84428 -25.45432 -23.75143 -23.15611 -22.54752 -21.69232 -21.39681 -19.89748 -19.20058 -17.97546 -17.48727 -17.29855 -17.11446 -17.08205 -16.90515 -16.42322 -16.31618 -15.78079 -15.64581 -15.18333 -14.99830 -14.79597 -14.72663 -14.45370 -14.06452 -13.99906 -13.95927 -13.35493 -13.33207 -13.16519 -13.06562 -12.99704 -12.60779 -12.46221 -12.40196 -12.28207 -11.90580 -11.85421 -11.34844 -11.31683 -11.16749 -10.93349 -10.52810 -10.48317 -10.16573 -10.03366 -8.98482 -8.51153 -6.21617 0.12580 0.56797 1.00245 1.14919 1.31881 1.47444 1.57082 1.61173 2.06206 2.19082 2.24365 2.29648 2.73256 2.87026 3.15423 3.46449 3.72725 3.82464 3.90033 3.94417 4.00879 4.09821 4.24339 4.36985 4.45574 4.45643 4.48489 4.52416 4.64327 4.68645 4.77188 4.84236 4.90997 5.04873 5.15361 5.33568 5.36518 5.41743 5.56642 5.71090 6.11657 6.37035 6.51222 6.86133 6.94040 7.10217 7.24661 8.61283 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.001896 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.137924 B =14767.520770 C =16073.242525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.070 0.930 4 C -0.121 4.121 5 C 0.118 3.882 6 N -0.703 5.703 7 C 0.601 3.399 8 O -0.572 6.572 9 C -0.127 4.127 10 C 0.107 3.893 11 N -0.351 5.351 12 C 0.073 3.927 13 N -0.092 5.092 14 N -0.221 5.221 15 N -0.709 5.709 16 C 0.537 3.463 17 O -0.561 6.561 18 C -0.113 4.113 19 S -0.175 6.175 20 C -0.530 4.530 21 H 0.061 0.939 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.237 1.237 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.418 0.582 36 H 0.234 0.766 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.415 0.585 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.112 -6.024 35.167 35.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.089 0.911 4 C -0.159 4.159 5 C -0.005 4.005 6 N -0.355 5.355 7 C 0.386 3.614 8 O -0.451 6.451 9 C -0.267 4.267 10 C -0.052 4.052 11 N -0.135 5.135 12 C -0.065 4.065 13 N -0.073 5.073 14 N -0.095 5.095 15 N -0.363 5.363 16 C 0.322 3.678 17 O -0.439 6.439 18 C -0.264 4.264 19 S 0.051 5.949 20 C -0.677 4.677 21 H 0.079 0.921 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.256 0.744 36 H 0.250 0.750 37 H 0.126 0.874 38 H 0.147 0.853 39 H 0.129 0.871 40 H 0.252 0.748 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.332 -4.461 35.422 35.857 hybrid contribution 1.091 -1.086 -1.181 1.940 sum 4.424 -5.547 34.240 34.968 Atomic orbital electron populations 1.22123 0.93892 1.03182 1.02406 1.20969 0.94931 0.96942 0.83168 0.91135 1.22020 0.92495 1.03559 0.97846 1.21416 0.95279 0.96961 0.86893 1.45673 1.06770 1.55950 1.27066 1.16987 0.82884 0.78647 0.82884 1.90842 1.56526 1.47823 1.49917 1.21450 0.91986 1.12228 1.01040 1.23867 1.00155 0.93385 0.87799 1.50717 1.09524 1.35793 1.17491 1.22735 0.81955 1.04832 0.97001 1.81919 0.84621 1.21865 1.18863 1.74561 1.27577 1.07001 1.00319 1.45914 1.67339 1.14616 1.08476 1.19885 0.76776 0.86575 0.84547 1.90686 1.50793 1.17353 1.85087 1.23294 1.05944 1.02331 0.94849 1.84680 1.86687 1.18773 1.04732 1.22474 1.50026 0.98260 0.96959 0.92054 1.25574 0.93240 1.02316 0.94904 1.70019 1.44395 1.37743 1.03341 0.85858 0.80991 0.79916 0.79543 1.18774 1.18247 1.16046 0.94715 0.90718 0.89447 0.87021 0.88003 0.92103 0.92427 0.74444 0.75013 0.87448 0.85334 0.87126 0.74825 0.87256 0.86856 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.48 71.98 0.68 -1.98 16 2 C 0.14 2.66 2.57 45.00 0.12 2.78 16 3 H 0.07 1.67 7.58 -2.39 -0.02 1.65 16 4 C -0.12 -1.34 4.87 30.60 0.15 -1.19 16 5 C 0.12 2.02 5.56 86.38 0.48 2.51 16 6 N -0.70 -11.65 5.55 -466.26 -2.59 -14.24 16 7 C 0.60 12.94 7.82 86.69 0.68 13.62 16 8 O -0.57 -16.32 16.86 -4.02 -0.07 -16.38 16 9 C -0.13 -2.29 6.99 40.82 0.29 -2.01 16 10 C 0.11 1.26 11.31 83.85 0.95 2.20 16 11 N -0.35 -3.48 4.03 -368.60 -1.49 -4.97 16 12 C 0.07 -0.07 11.51 127.77 1.47 1.40 16 13 N -0.09 -1.59 13.78 37.02 0.51 -1.08 16 14 N -0.22 -4.22 12.04 -50.00 -0.60 -4.83 16 15 N -0.71 -15.96 4.53 -442.52 -2.00 -17.96 16 16 C 0.54 18.36 7.81 87.66 0.68 19.04 16 17 O -0.56 -23.87 15.52 -3.04 -0.05 -23.92 16 18 C -0.11 -4.33 6.16 71.24 0.44 -3.90 16 19 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 20 C -0.53 -31.37 10.04 67.95 0.68 -30.69 16 21 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 22 C 0.05 2.68 5.50 84.86 0.47 3.15 16 23 N -0.92 -56.54 13.97 21.65 0.30 -56.24 16 24 Si 0.92 45.73 27.74 68.60 1.90 47.63 16 25 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 1.24 7.75 -2.39 -0.02 1.22 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.42 5.15 8.16 -92.71 -0.76 4.39 16 36 H 0.23 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.41 6.84 8.60 -92.71 -0.80 6.04 16 41 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 42 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 43 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -87.87 389.21 1.42 -86.45 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -0.54 Total: 10.65 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 7.08 Total: 4.94 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -5.87 Total: -99.31 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.12 Total: -40.31 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -87.87 1.42 -86.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076365298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.355 kcal (2) G-P(sol) polarization free energy of solvation -87.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds