Wall clock time and date at job start Sat Apr 11 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21561 * 120.00108 * 359.97438 * 7 6 5 9 9 C 1.47870 * 120.00037 * 179.97438 * 7 6 5 10 10 N 1.34547 * 126.04708 * 0.02562 * 9 7 6 11 11 C 1.30866 * 107.27175 * 179.97438 * 10 9 7 12 12 N 1.34582 * 107.62590 * 0.02562 * 11 10 9 13 13 C 1.46498 * 125.75236 * 179.97438 * 12 11 10 14 14 N 1.28859 * 108.50092 * 359.72712 * 12 11 10 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47012 * 89.99727 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46788 * 330.00118 * 24 22 20 28 28 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 30 30 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.08006 * 126.19204 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.47188 * 89.99520 * 13 12 11 38 38 H 1.09000 * 109.47266 * 209.99952 * 13 12 11 39 39 H 1.08995 * 109.47053 * 329.99378 * 13 12 11 40 40 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1601 -0.7986 2.0225 9 6 5.8668 -2.0366 3.9829 10 7 5.1091 -2.6732 4.8944 11 6 5.9177 -3.1556 5.8032 12 7 7.1723 -2.8169 5.4536 13 6 8.3889 -3.1560 6.1959 14 7 7.1237 -2.1485 4.3530 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.2888 1.1306 -7.7834 24 14 4.1903 -1.2601 -8.8567 25 1 3.0483 -1.8974 -9.5601 26 1 4.9895 -0.4687 -9.8263 27 1 5.0467 -2.3109 -8.2503 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5137 -0.8900 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 5.6302 -3.7231 6.6761 37 1 8.7760 -4.1115 5.8422 38 1 9.1383 -2.3800 6.0394 39 1 8.1577 -3.2286 7.2586 40 1 2.2491 -1.6319 -1.1524 41 1 3.6539 -1.1197 -3.3923 42 1 1.9842 -1.5494 -3.8349 43 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076374126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:48 Heat of formation + Delta-G solvation = 14.520327 kcal Electronic energy + Delta-G solvation = -25716.328829 eV Core-core repulsion = 21731.949741 eV Total energy + Delta-G solvation = -3984.379088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.89809 -39.83728 -39.25588 -36.58416 -35.13252 -34.58519 -32.37933 -32.22464 -31.79793 -29.75132 -28.48044 -28.06852 -25.43678 -24.90824 -23.35392 -22.42387 -21.55161 -20.73607 -20.27237 -18.61401 -17.77197 -17.27406 -16.87569 -16.56876 -16.47110 -15.92565 -15.49108 -15.26622 -14.83235 -14.75742 -14.36176 -14.25269 -13.91055 -13.82523 -13.61390 -13.43119 -13.17232 -12.84828 -12.59998 -12.41386 -12.09515 -11.88764 -11.71350 -11.50063 -11.04677 -11.01930 -10.97044 -10.95962 -10.91369 -10.71495 -10.48705 -10.04635 -9.76466 -9.35562 -9.32127 -9.02220 -8.85547 -8.17839 -6.44063 -6.16778 -3.86691 0.98420 1.63560 1.68382 2.69595 3.06559 3.08932 3.16205 3.26147 3.31703 3.36526 3.64201 3.77200 3.85441 4.22738 4.25330 4.37656 4.50823 4.53648 4.68704 4.74753 4.80671 5.18307 5.21500 5.28686 5.36586 5.38675 5.48883 5.60812 5.66386 5.72544 5.77887 5.81241 5.95698 5.96204 6.05707 6.10149 6.20420 6.22749 6.71324 7.09147 7.55237 7.64572 7.76565 7.89910 8.40241 8.68095 9.28594 10.90656 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.001903 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.224437 B =14713.625956 C =16312.011941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.137 4.137 5 C 0.118 3.882 6 N -0.710 5.710 7 C 0.613 3.387 8 O -0.511 6.511 9 C 0.143 3.857 10 N -0.486 5.486 11 C 0.191 3.809 12 N -0.305 5.305 13 C 0.084 3.916 14 N -0.250 5.250 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.409 0.591 36 H 0.228 0.772 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.397 0.603 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -12.491 34.113 36.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.176 4.176 5 C -0.005 4.005 6 N -0.363 5.363 7 C 0.394 3.606 8 O -0.382 6.382 9 C -0.137 4.137 10 N -0.212 5.212 11 C -0.104 4.104 12 N -0.100 5.100 13 C -0.056 4.056 14 N -0.090 5.090 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.245 0.755 36 H 0.244 0.756 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.050 -9.702 32.931 34.466 hybrid contribution 0.682 -3.084 -0.041 3.159 sum 3.731 -12.787 32.890 35.485 Atomic orbital electron populations 1.22169 0.94984 1.02112 1.02821 1.20779 0.94179 0.97767 0.83158 0.88984 1.22111 0.94246 1.02280 0.98913 1.21516 0.93859 0.98122 0.87024 1.45653 1.06498 1.56739 1.27392 1.16265 0.82807 0.79467 0.82090 1.90895 1.55456 1.44379 1.47504 1.23755 0.86494 1.04337 0.99103 1.71246 1.32582 1.13878 1.03509 1.26499 0.80675 1.01779 1.01470 1.47418 1.09634 1.36597 1.16385 1.22290 0.83746 1.03773 0.95821 1.74389 1.21994 1.12722 0.99853 1.46133 1.69486 1.13901 1.09556 1.20286 0.76739 0.87206 0.83751 1.90698 1.48308 1.15694 1.84356 1.23542 1.03668 1.04850 0.98451 1.85374 1.86012 1.12954 0.98986 1.22875 1.50734 0.98167 0.96528 0.90955 1.24988 0.95152 0.95523 0.97941 1.70021 1.45627 1.13164 1.21497 0.86173 0.78818 0.79980 0.80564 1.20314 1.20770 1.19703 0.92520 0.91851 0.91446 0.89537 0.90432 0.90468 0.90618 0.75511 0.75628 0.88958 0.88017 0.87837 0.76892 0.89206 0.89293 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.16 0.35 -1.30 16 2 C 0.15 1.60 2.57 -67.93 -0.17 1.42 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 4 C -0.14 -1.03 4.87 -26.73 -0.13 -1.16 16 5 C 0.12 1.18 5.56 -4.04 -0.02 1.16 16 6 N -0.71 -6.93 5.55 -61.23 -0.34 -7.27 16 7 C 0.61 8.04 7.83 -12.32 -0.10 7.94 16 8 O -0.51 -8.78 17.09 5.31 0.09 -8.69 16 9 C 0.14 1.67 7.96 -156.36 -1.24 0.43 16 10 N -0.49 -4.34 11.09 -12.37 -0.14 -4.47 16 11 C 0.19 1.00 12.62 -90.49 -1.14 -0.14 16 12 N -0.30 -1.93 3.72 -69.40 -0.26 -2.19 16 13 C 0.08 0.08 11.38 59.85 0.68 0.77 16 14 N -0.25 -2.83 12.08 32.07 0.39 -2.44 16 15 N -0.74 -9.56 4.53 -53.80 -0.24 -9.81 16 16 C 0.53 9.98 7.81 -10.98 -0.09 9.89 16 17 O -0.52 -11.70 15.52 5.55 0.09 -11.62 16 18 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.56 9.50 30.94 0.29 -15.26 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.62 13.22 55.49 0.73 -25.89 16 24 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.41 3.05 8.18 -40.82 -0.33 2.72 16 36 H 0.23 -0.04 8.06 -52.48 -0.42 -0.47 16 37 H 0.09 -0.01 8.14 -51.93 -0.42 -0.44 16 38 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 39 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 40 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 41 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -41.69 391.33 -8.56 -50.25 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.10 Total: 0.42 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.44 Total: 2.82 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.14 Total: -52.06 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.18 Total: -20.31 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -41.69 -8.56 -50.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076374126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.773 kcal (2) G-P(sol) polarization free energy of solvation -41.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds