Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 N 1.46504 * 109.47396 * 180.02562 * 9 7 6 11 11 N 1.28596 * 124.61747 * 269.70562 * 10 9 7 12 12 C 1.31387 * 108.71379 * 179.82652 * 11 10 9 13 13 C 1.39673 * 105.90061 * 0.40850 * 12 11 10 14 14 N 1.28601 * 124.61667 * 89.99474 * 10 9 7 15 15 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 16 16 C 1.34773 * 120.00306 * 84.99801 * 15 2 1 17 17 O 1.21292 * 119.99815 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00409 * 179.97438 * 16 15 2 19 19 S 1.81002 * 109.47414 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00112 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99904 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99925 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00183 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99898 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47316 * 89.99917 * 24 22 20 26 26 H 1.48498 * 109.47310 * 209.99776 * 24 22 20 27 27 H 1.48496 * 109.47352 * 330.00205 * 24 22 20 28 28 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 29 29 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 1.08001 * 127.04738 * 180.15892 * 12 11 10 39 39 H 1.08004 * 127.05019 * 179.76523 * 13 12 11 40 40 H 0.97003 * 120.00235 * 265.00555 * 15 2 1 41 41 H 1.08997 * 109.47334 * 300.00478 * 18 16 15 42 42 H 1.09008 * 109.47061 * 60.00564 * 18 16 15 43 43 H 0.97003 * 120.00222 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 7 7.3364 -1.9462 4.0677 11 7 8.1513 -2.7957 3.5500 12 6 9.3811 -2.3982 3.7866 13 6 9.2664 -1.2129 4.5165 14 7 7.9776 -0.9966 4.6515 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8589 1.1589 -2.4114 18 6 2.6498 -0.7281 -3.5876 19 16 2.7098 0.4348 -4.9733 20 6 3.3130 -0.6303 -6.2407 21 1 3.5224 -1.6667 -6.0208 22 6 3.5189 -0.1373 -7.5217 23 7 3.2632 1.1258 -7.7899 24 14 4.1591 -1.2662 -8.8652 25 1 3.0140 -1.9042 -9.5631 26 1 4.9539 -0.4757 -9.8391 27 1 5.0182 -2.3164 -8.2617 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.4258 -1.7353 3.1108 36 1 5.4421 -1.5889 4.8935 37 1 5.5874 -3.0996 3.9633 38 1 10.2935 -2.8897 3.4827 39 1 10.0721 -0.5998 4.8927 40 1 2.2489 -1.6317 -1.1529 41 1 3.6491 -1.1200 -3.3981 42 1 1.9775 -1.5504 -3.8328 43 1 3.4068 1.4702 -8.6853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076694434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = 34.847823 kcal Electronic energy + Delta-G solvation = -25860.365860 eV Core-core repulsion = 21876.868238 eV Total energy + Delta-G solvation = -3983.497622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.84417 -40.21666 -39.41780 -36.76016 -34.85125 -34.16750 -32.70666 -32.41882 -31.92646 -30.05191 -28.59438 -28.17677 -25.47548 -24.07951 -23.19316 -22.28223 -21.71342 -20.84440 -20.36858 -18.31937 -17.95370 -17.79722 -16.69379 -16.39861 -16.21955 -16.04897 -15.87332 -15.26347 -14.93929 -14.79361 -14.68412 -14.49926 -14.13531 -13.94073 -13.68782 -13.26005 -12.96659 -12.94164 -12.65175 -12.20284 -11.97763 -11.94268 -11.84865 -11.61546 -11.15677 -11.10218 -11.05293 -11.01103 -10.75195 -10.68043 -10.60757 -9.80631 -9.63514 -9.61105 -9.40289 -9.06244 -8.95041 -8.22918 -6.48828 -6.20542 -3.91011 1.37977 1.78094 2.01099 2.22172 2.66696 3.02055 3.08038 3.23376 3.28722 3.32995 3.69767 3.78049 3.99620 4.21551 4.29579 4.35428 4.44188 4.57764 4.65152 4.74624 5.06372 5.13112 5.14531 5.15178 5.25206 5.27631 5.48330 5.55319 5.61729 5.66116 5.67180 5.86068 5.87867 5.89002 5.95775 6.12384 6.15043 6.26620 6.61650 6.86417 7.60648 7.61306 7.67294 8.00719 8.36361 8.59755 9.24832 10.86893 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010428 B = 0.002092 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.380955 B =13383.021145 C =15517.800028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.137 4.137 5 C 0.117 3.883 6 N -0.724 5.724 7 C 0.497 3.503 8 O -0.512 6.512 9 C 0.124 3.876 10 N -0.148 5.148 11 N -0.282 5.282 12 C -0.022 4.022 13 C -0.022 4.022 14 N -0.283 5.283 15 N -0.737 5.737 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.402 0.598 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.199 0.801 39 H 0.199 0.801 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -10.176 30.042 31.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.006 4.006 6 N -0.378 5.378 7 C 0.280 3.720 8 O -0.385 6.385 9 C 0.000 4.000 10 N -0.047 5.047 11 N -0.122 5.122 12 C -0.205 4.205 13 C -0.206 4.206 14 N -0.123 5.123 15 N -0.392 5.392 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.237 0.763 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.216 0.784 39 H 0.216 0.784 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.484 -7.742 29.197 30.209 hybrid contribution 1.519 -2.675 -0.531 3.122 sum 2.004 -10.417 28.666 30.565 Atomic orbital electron populations 1.22173 0.94911 1.02128 1.02895 1.20772 0.94235 0.97762 0.83161 0.89040 1.22108 0.94178 1.02209 0.99009 1.21489 0.93844 0.98121 0.87145 1.45843 1.06678 1.57541 1.27710 1.20491 0.83103 0.81298 0.87100 1.90859 1.55058 1.44054 1.48555 1.21647 0.73483 1.05090 0.99814 1.47274 1.07184 1.13617 1.36675 1.74060 1.01360 1.19058 1.17719 1.24826 0.95529 0.97620 1.02552 1.24816 0.93178 0.99032 1.03542 1.74041 1.07255 1.13731 1.17270 1.46134 1.69576 1.13864 1.09584 1.20306 0.76697 0.87221 0.83762 1.90704 1.48185 1.15708 1.84375 1.23539 1.03663 1.04875 0.98425 1.85386 1.86272 1.12956 0.98719 1.22864 1.50994 0.98133 0.96346 0.90950 1.24993 0.95106 0.95544 0.97976 1.70016 1.45596 1.13199 1.21478 0.86165 0.78824 0.79965 0.80533 1.20280 1.20737 1.19694 0.91383 0.92505 0.91842 0.90471 0.89590 0.90799 0.90589 0.76320 0.84457 0.84426 0.78392 0.78404 0.76929 0.89256 0.89259 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.15 1.46 2.57 -67.93 -0.17 1.28 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 C -0.14 -0.80 4.87 -26.74 -0.13 -0.93 16 5 C 0.12 0.97 5.56 -4.04 -0.02 0.95 16 6 N -0.72 -4.32 5.56 -60.29 -0.33 -4.65 16 7 C 0.50 4.60 7.90 -10.99 -0.09 4.51 16 8 O -0.51 -7.87 16.43 5.56 0.09 -7.78 16 9 C 0.12 0.75 7.02 -5.19 -0.04 0.71 16 10 N -0.15 -1.53 3.44 -11.66 -0.04 -1.57 16 11 N -0.28 -3.14 12.05 30.68 0.37 -2.77 16 12 C -0.02 -0.19 12.20 -17.21 -0.21 -0.40 16 13 C -0.02 -0.20 12.20 -17.21 -0.21 -0.41 16 14 N -0.28 -3.10 12.05 30.67 0.37 -2.73 16 15 N -0.74 -9.05 4.53 -53.81 -0.24 -9.29 16 16 C 0.53 9.72 7.81 -10.99 -0.09 9.63 16 17 O -0.52 -11.48 15.53 5.55 0.09 -11.39 16 18 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 24 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.80 7.75 -51.93 -0.40 0.39 16 35 H 0.40 0.72 8.47 -40.82 -0.35 0.37 16 36 H 0.14 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.14 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.20 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.40 3.79 8.60 -40.82 -0.35 3.44 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -42.43 391.06 -6.61 -49.03 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.11 Total: 0.00 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.18 Total: -1.84 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.85 Total: -46.73 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -42.43 -6.61 -49.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076694434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.880 kcal (2) G-P(sol) polarization free energy of solvation -42.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds