Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21561 * 120.00108 * 359.97438 * 7 6 5 9 9 C 1.47800 * 119.99936 * 179.97438 * 7 6 5 10 10 C 1.40926 * 127.23727 * 179.97438 * 9 7 6 11 11 N 1.31133 * 105.77549 * 179.97438 * 10 9 7 12 12 N 1.28520 * 109.05910 * 0.02562 * 11 10 9 13 13 C 1.46499 * 124.44004 * 179.97438 * 12 11 10 14 14 N 1.28588 * 111.10912 * 359.73825 * 12 11 10 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.07998 * 127.10893 * 359.95332 * 10 9 7 37 37 H 1.08996 * 109.47585 * 90.01878 * 13 12 11 38 38 H 1.09007 * 109.46444 * 210.01942 * 13 12 11 39 39 H 1.09003 * 109.47132 * 330.01365 * 13 12 11 40 40 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1601 -0.7986 2.0225 9 6 5.8666 -2.0362 3.9824 10 6 7.2046 -2.1674 4.4049 11 7 7.1607 -2.8579 5.5188 12 7 5.9367 -3.1427 5.7881 13 6 5.5024 -3.9073 6.9597 14 7 5.1430 -2.6641 4.8967 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.9995 -0.9271 -8.4604 24 14 3.1831 1.6604 -7.8954 25 1 4.4006 2.4739 -7.6484 26 1 2.7796 1.7929 -9.3185 27 1 2.0819 2.1397 -7.0220 28 1 -0.3633 0.5140 0.8898 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 8.0843 -1.7796 3.9128 37 1 5.3098 -3.2253 7.7879 38 1 4.5903 -4.4537 6.7193 39 1 6.2839 -4.6122 7.2437 40 1 2.2491 -1.6319 -1.1524 41 1 3.6539 -1.1197 -3.3923 42 1 1.9842 -1.5494 -3.8349 43 1 4.1478 -0.5816 -9.3546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077384367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = 30.231308 kcal Electronic energy + Delta-G solvation = -25792.333859 eV Core-core repulsion = 21808.636050 eV Total energy + Delta-G solvation = -3983.697809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.13029 -39.96054 -39.40570 -36.71400 -34.79461 -34.32411 -33.17821 -32.41084 -31.88048 -29.71370 -28.64858 -28.31998 -25.58567 -25.06825 -23.17986 -22.58510 -21.67170 -20.74859 -20.40510 -18.36963 -17.83522 -17.51004 -17.34917 -16.68854 -16.37301 -15.94314 -15.55196 -15.26971 -15.02792 -14.92866 -14.46912 -14.32553 -13.84521 -13.63011 -13.53676 -13.50949 -13.36530 -12.99049 -12.76708 -12.41576 -12.26597 -12.04137 -11.82870 -11.60614 -11.53005 -11.23651 -11.15498 -10.97874 -10.93951 -10.58788 -10.53232 -9.94689 -9.82973 -9.48989 -9.44411 -9.01602 -8.95539 -8.46992 -6.88399 -6.25991 -3.97434 0.83173 1.49693 1.63508 2.67678 2.79020 2.89002 2.99599 3.32349 3.36940 3.42996 3.53026 3.67915 4.24640 4.35952 4.36451 4.40320 4.45942 4.57398 4.64413 4.69195 4.71406 4.79488 5.13095 5.16990 5.18598 5.22405 5.29672 5.34891 5.50099 5.53034 5.59821 5.70026 5.79979 5.93252 5.98231 6.01199 6.04985 6.11813 6.57632 7.03573 7.60428 7.61966 7.79034 7.97058 8.44724 8.51357 9.20277 10.83242 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.001884 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.581994 B =14859.041025 C =15951.259578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.138 4.138 5 C 0.116 3.884 6 N -0.716 5.716 7 C 0.607 3.393 8 O -0.518 6.518 9 C -0.046 4.046 10 C 0.038 3.962 11 N -0.290 5.290 12 N -0.143 5.143 13 C 0.103 3.897 14 N -0.252 5.252 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.406 0.594 36 H 0.210 0.790 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 -7.147 34.025 34.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.110 0.890 4 C -0.176 4.176 5 C -0.007 4.007 6 N -0.368 5.368 7 C 0.390 3.610 8 O -0.391 6.391 9 C -0.209 4.209 10 C -0.146 4.146 11 N -0.130 5.130 12 N -0.046 5.046 13 C -0.037 4.037 14 N -0.101 5.101 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.241 0.759 36 H 0.227 0.773 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.248 -5.504 34.273 34.785 hybrid contribution 0.400 -1.058 -0.670 1.314 sum -1.848 -6.562 33.603 34.288 Atomic orbital electron populations 1.22172 0.94930 1.02185 1.02837 1.20788 0.94210 0.97739 0.83104 0.88964 1.22114 0.94403 1.02253 0.98849 1.21509 0.93775 0.98163 0.87254 1.45812 1.06900 1.56720 1.27328 1.16609 0.82588 0.79264 0.82546 1.90884 1.55473 1.45031 1.47745 1.23072 0.92822 1.06370 0.98609 1.24916 0.98379 0.98889 0.92377 1.74064 1.04362 1.17025 1.17539 1.48054 1.00644 1.36981 1.18928 1.22284 1.03140 0.95806 0.82426 1.74321 1.24241 1.11538 1.00039 1.46095 1.69304 1.13985 1.09493 1.20266 0.76805 0.87204 0.83828 1.90697 1.48476 1.15693 1.84393 1.23290 1.04468 1.03474 0.96347 1.84772 1.86911 1.16863 1.02979 1.22323 1.50217 0.98802 0.95532 0.89402 1.24714 0.93373 0.98281 0.94955 1.69941 1.43289 1.35815 1.02677 0.86732 0.81137 0.84885 0.79074 1.19190 1.19984 1.15937 0.91814 0.91464 0.92453 0.89586 0.90447 0.90433 0.90638 0.75913 0.77319 0.88738 0.87499 0.87428 0.76726 0.88467 0.88523 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.14 16 2 C 0.15 1.43 2.57 -67.93 -0.17 1.26 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.14 -0.88 4.87 -26.73 -0.13 -1.01 16 5 C 0.12 1.01 5.56 -4.04 -0.02 0.99 16 6 N -0.72 -5.89 5.55 -61.26 -0.34 -6.23 16 7 C 0.61 6.63 7.83 -12.35 -0.10 6.54 16 8 O -0.52 -7.52 16.95 5.31 0.09 -7.43 16 9 C -0.05 -0.45 7.21 -82.68 -0.60 -1.04 16 10 C 0.04 0.34 12.04 -16.83 -0.20 0.14 16 11 N -0.29 -2.53 12.01 30.90 0.37 -2.16 16 12 N -0.14 -1.02 4.35 -16.63 -0.07 -1.09 16 13 C 0.10 0.18 11.55 59.85 0.69 0.88 16 14 N -0.25 -2.10 11.84 33.42 0.40 -1.70 16 15 N -0.73 -8.64 4.53 -53.80 -0.24 -8.88 16 16 C 0.53 9.18 7.81 -10.98 -0.09 9.10 16 17 O -0.52 -10.89 15.52 5.55 0.09 -10.80 16 18 C -0.13 -2.41 6.16 36.01 0.22 -2.19 16 19 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 20 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 21 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.81 13.97 55.49 0.78 -26.03 16 24 Si 0.86 22.01 27.74 -169.99 -4.72 17.30 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.80 7.75 -51.93 -0.40 0.39 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.41 2.43 8.24 -40.82 -0.34 2.10 16 36 H 0.21 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 38 H 0.11 0.01 8.14 -51.92 -0.42 -0.41 16 39 H 0.11 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.40 3.66 8.60 -40.82 -0.35 3.31 16 41 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 42 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -38.71 388.72 -5.75 -44.46 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.13 Total: 0.94 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 0.17 Total: 1.38 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.89 Total: -46.10 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.18 Total: -18.23 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.30 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.71 -5.75 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077384367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.689 kcal (2) G-P(sol) polarization free energy of solvation -38.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds