Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21561 * 120.00108 * 359.97438 * 7 6 5 9 9 C 1.47800 * 119.99936 * 179.97438 * 7 6 5 10 10 C 1.40926 * 127.23727 * 179.97438 * 9 7 6 11 11 N 1.31133 * 105.77549 * 179.97438 * 10 9 7 12 12 N 1.28520 * 109.05910 * 0.02562 * 11 10 9 13 13 C 1.46499 * 124.44004 * 179.97438 * 12 11 10 14 14 N 1.28588 * 111.10912 * 359.73825 * 12 11 10 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.07998 * 127.10893 * 359.95332 * 10 9 7 37 37 H 1.08996 * 109.47585 * 90.01878 * 13 12 11 38 38 H 1.09007 * 109.46444 * 210.01942 * 13 12 11 39 39 H 1.09003 * 109.47132 * 330.01365 * 13 12 11 40 40 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1601 -0.7986 2.0225 9 6 5.8666 -2.0362 3.9824 10 6 7.2046 -2.1674 4.4049 11 7 7.1607 -2.8579 5.5188 12 7 5.9367 -3.1427 5.7881 13 6 5.5024 -3.9073 6.9597 14 7 5.1430 -2.6641 4.8967 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.9995 -0.9271 -8.4604 24 14 3.1831 1.6604 -7.8954 25 1 4.4006 2.4739 -7.6484 26 1 2.7796 1.7929 -9.3185 27 1 2.0819 2.1397 -7.0220 28 1 -0.3633 0.5140 0.8898 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 8.0843 -1.7796 3.9128 37 1 5.3098 -3.2253 7.7879 38 1 4.5903 -4.4537 6.7193 39 1 6.2839 -4.6122 7.2437 40 1 2.2491 -1.6319 -1.1524 41 1 3.6539 -1.1197 -3.3923 42 1 1.9842 -1.5494 -3.8349 43 1 4.1478 -0.5816 -9.3546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077384367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -1.392818 kcal Electronic energy + Delta-G solvation = -25793.705184 eV Core-core repulsion = 21808.636050 eV Total energy + Delta-G solvation = -3985.069134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.73463 -40.94749 -40.51284 -37.69627 -35.72124 -34.81245 -34.67000 -33.84269 -32.98833 -30.63212 -29.80416 -28.78733 -27.84595 -25.74280 -23.92420 -23.14226 -22.56667 -21.71128 -21.39947 -19.89089 -18.99617 -18.07551 -18.02725 -17.92124 -17.38476 -17.08843 -16.85610 -16.47239 -16.38080 -15.81297 -15.80198 -15.26826 -15.00793 -14.80375 -14.73424 -14.44238 -14.01818 -13.83562 -13.65060 -13.35995 -13.33704 -13.07804 -13.07344 -12.99944 -12.61122 -12.44507 -12.39816 -12.17613 -11.91855 -11.85638 -11.58056 -11.42716 -11.16960 -10.93804 -10.56452 -10.53034 -10.21877 -10.07149 -8.98682 -8.51309 -6.21800 0.15465 0.83242 1.00101 1.23296 1.31849 1.47174 1.56910 1.60836 1.97838 2.09969 2.24130 2.29350 2.73014 2.83030 2.86911 3.66976 3.72341 3.86675 3.95506 4.01792 4.09192 4.24089 4.29308 4.31903 4.45196 4.46457 4.48046 4.50590 4.64110 4.67328 4.84193 4.89055 4.90539 5.03347 5.14286 5.28744 5.36384 5.50047 5.56475 5.70896 6.11491 6.34097 6.50866 6.93897 6.97108 7.05742 7.24478 8.61115 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.001884 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.581994 B =14859.041025 C =15951.259578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.070 0.930 4 C -0.120 4.120 5 C 0.116 3.884 6 N -0.698 5.698 7 C 0.606 3.394 8 O -0.564 6.564 9 C -0.067 4.067 10 C 0.025 3.975 11 N -0.301 5.301 12 N -0.133 5.133 13 C 0.087 3.913 14 N -0.246 5.246 15 N -0.709 5.709 16 C 0.537 3.463 17 O -0.561 6.561 18 C -0.113 4.113 19 S -0.176 6.176 20 C -0.530 4.530 21 H 0.061 0.939 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.264 1.264 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.087 0.913 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.420 0.580 36 H 0.218 0.782 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.415 0.585 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.447 -7.984 36.960 37.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.007 4.007 6 N -0.350 5.350 7 C 0.390 3.610 8 O -0.441 6.441 9 C -0.228 4.228 10 C -0.157 4.157 11 N -0.141 5.141 12 N -0.038 5.038 13 C -0.050 4.050 14 N -0.096 5.096 15 N -0.364 5.364 16 C 0.322 3.678 17 O -0.439 6.439 18 C -0.264 4.264 19 S 0.051 5.949 20 C -0.677 4.677 21 H 0.080 0.920 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.257 0.743 36 H 0.234 0.766 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.252 0.748 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.748 -6.404 37.264 37.996 hybrid contribution 0.836 -0.968 -1.342 1.854 sum -2.912 -7.372 35.922 36.786 Atomic orbital electron populations 1.22121 0.93824 1.03219 1.02408 1.20985 0.94981 0.96958 0.83197 0.91212 1.22015 0.92220 1.03665 0.97856 1.21458 0.95455 0.97017 0.86808 1.45659 1.06327 1.55875 1.27140 1.16811 0.82973 0.78748 0.82493 1.90855 1.56688 1.47167 1.49385 1.22886 0.93246 1.07718 0.98941 1.25145 0.98753 0.99119 0.92698 1.74063 1.05263 1.17323 1.17474 1.48661 1.00116 1.35808 1.19211 1.22833 1.04566 0.96350 0.81294 1.74275 1.24134 1.11269 0.99960 1.45912 1.67360 1.14621 1.08472 1.19881 0.76766 0.86568 0.84570 1.90687 1.50786 1.17367 1.85094 1.23296 1.05941 1.02342 0.94865 1.84682 1.86672 1.18807 1.04753 1.22474 1.50048 0.98255 0.96949 0.92048 1.25574 0.93238 1.02307 0.94913 1.70019 1.44383 1.37746 1.03344 0.85859 0.80980 0.79919 0.79557 1.18835 1.18230 1.16009 0.89377 0.94817 0.90632 0.86823 0.87797 0.92073 0.92386 0.74256 0.76589 0.86826 0.85483 0.85898 0.74801 0.87293 0.86811 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 71.98 0.68 -1.79 16 2 C 0.14 2.49 2.57 45.00 0.12 2.60 16 3 H 0.07 1.59 7.58 -2.39 -0.02 1.57 16 4 C -0.12 -1.12 4.87 30.60 0.15 -0.97 16 5 C 0.12 1.85 5.56 86.38 0.48 2.33 16 6 N -0.70 -10.36 5.55 -466.00 -2.59 -12.95 16 7 C 0.61 13.07 7.83 86.77 0.68 13.74 16 8 O -0.56 -16.87 16.95 -3.91 -0.07 -16.93 16 9 C -0.07 -1.25 7.21 42.24 0.30 -0.95 16 10 C 0.03 0.45 12.04 85.46 1.03 1.48 16 11 N -0.30 -4.90 12.01 -56.16 -0.67 -5.57 16 12 N -0.13 -1.62 4.35 -206.54 -0.90 -2.52 16 13 C 0.09 0.06 11.55 127.77 1.48 1.54 16 14 N -0.25 -3.64 11.84 -48.17 -0.57 -4.21 16 15 N -0.71 -15.43 4.53 -442.52 -2.00 -17.43 16 16 C 0.54 18.14 7.81 87.66 0.68 18.83 16 17 O -0.56 -23.71 15.52 -3.04 -0.05 -23.75 16 18 C -0.11 -4.32 6.16 71.24 0.44 -3.88 16 19 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 20 C -0.53 -31.37 10.04 67.95 0.68 -30.69 16 21 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 22 C 0.05 2.68 5.50 84.86 0.47 3.15 16 23 N -0.92 -56.60 13.97 21.65 0.30 -56.30 16 24 Si 0.91 45.78 27.74 68.60 1.90 47.68 16 25 H -0.26 -12.93 7.11 99.48 0.71 -12.23 16 26 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 1.20 7.75 -2.39 -0.02 1.18 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.42 3.85 8.24 -92.71 -0.76 3.08 16 36 H 0.22 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.13 -0.40 8.14 -2.38 -0.02 -0.41 16 39 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.41 6.48 8.60 -92.71 -0.80 5.69 16 41 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 42 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 43 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -87.14 388.72 0.95 -86.18 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -0.55 Total: 10.47 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 7.19 Total: 5.40 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -6.43 Total: -98.98 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.11 Total: -40.69 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.68 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -87.14 0.95 -86.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077384367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.792 kcal (2) G-P(sol) polarization free energy of solvation -87.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds