Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 N 1.46504 * 109.47396 * 180.02562 * 9 7 6 11 11 C 1.34425 * 126.82443 * 124.99597 * 10 9 7 12 12 N 1.30833 * 108.08050 * 179.97438 * 11 10 9 13 13 C 1.33244 * 109.82694 * 0.02562 * 12 11 10 14 14 N 1.30722 * 108.94493 * 359.75137 * 13 12 11 15 15 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 16 16 C 1.34773 * 120.00306 * 84.99801 * 15 2 1 17 17 O 1.21292 * 119.99815 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00409 * 179.97438 * 16 15 2 19 19 S 1.81002 * 109.47414 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00112 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99904 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99925 * 180.02562 * 20 19 18 23 23 N 1.31636 * 120.00258 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00209 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47058 * 90.00181 * 24 22 20 26 26 H 1.48501 * 109.47242 * 210.00255 * 24 22 20 27 27 H 1.48494 * 109.47103 * 330.00191 * 24 22 20 28 28 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 29 29 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 1.08006 * 125.95929 * 0.02562 * 11 10 9 39 39 H 1.07993 * 125.52659 * 179.97438 * 13 12 11 40 40 H 0.97003 * 120.00235 * 265.00555 * 15 2 1 41 41 H 1.08997 * 109.47334 * 300.00478 * 18 16 15 42 42 H 1.09008 * 109.47061 * 60.00564 * 18 16 15 43 43 H 0.96991 * 120.00114 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 7 7.3364 -1.9462 4.0677 11 6 8.0677 -1.4650 5.0878 12 7 9.3305 -1.5441 4.7549 13 6 9.4443 -2.0676 3.5349 14 7 8.2503 -2.3350 3.0748 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8589 1.1589 -2.4114 18 6 2.6498 -0.7281 -3.5876 19 16 2.7098 0.4348 -4.9733 20 6 3.3130 -0.6303 -6.2407 21 1 3.5224 -1.6667 -6.0208 22 6 3.5189 -0.1373 -7.5217 23 7 3.9691 -0.9330 -8.4688 24 14 3.1560 1.6552 -7.9023 25 1 4.3746 2.4689 -7.6614 26 1 2.7461 1.7863 -9.3236 27 1 2.0587 2.1352 -7.0245 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.4258 -1.7353 3.1108 36 1 5.4421 -1.5889 4.8935 37 1 5.5874 -3.0996 3.9633 38 1 7.6804 -1.0809 6.0200 39 1 10.3726 -2.2458 3.0126 40 1 2.2489 -1.6317 -1.1529 41 1 3.6491 -1.1200 -3.3981 42 1 1.9775 -1.5504 -3.8328 43 1 4.1134 -0.5884 -9.3639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078570720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = 17.908229 kcal Electronic energy + Delta-G solvation = -25862.087379 eV Core-core repulsion = 21877.855201 eV Total energy + Delta-G solvation = -3984.232177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.41353 -40.18031 -39.51550 -36.82755 -34.87897 -34.46173 -32.43027 -32.02826 -31.52615 -30.07370 -28.69999 -28.06518 -25.60547 -24.07609 -22.50907 -22.33710 -21.78791 -20.88428 -20.46997 -18.05474 -17.91370 -17.72993 -16.77732 -16.42466 -16.37143 -15.85994 -15.57168 -15.26082 -14.99427 -14.96019 -14.66204 -14.40045 -14.05069 -13.93720 -13.68149 -13.42570 -13.18194 -13.04527 -12.78753 -12.34377 -12.23825 -12.09737 -11.88779 -11.68848 -11.26005 -11.22434 -10.99787 -10.73536 -10.59340 -10.36518 -10.11594 -9.93923 -9.85035 -9.60098 -9.53682 -9.07071 -8.98249 -8.49779 -6.90964 -6.27809 -3.99607 1.23667 1.74280 2.04905 2.57695 2.68183 2.75314 2.94557 3.28798 3.34946 3.50985 3.64291 3.85893 3.94540 4.04633 4.29850 4.34008 4.34341 4.49190 4.53766 4.59593 4.75310 4.85715 5.08954 5.11207 5.14669 5.20825 5.29614 5.43710 5.52039 5.59851 5.76232 5.82935 5.85526 5.87331 6.01233 6.05717 6.08796 6.32831 6.51523 6.88587 7.55774 7.65644 7.73666 7.95281 8.42812 8.46167 9.18293 10.81456 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.002089 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.022616 B =13398.806878 C =15301.725286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.118 3.882 6 N -0.729 5.729 7 C 0.495 3.505 8 O -0.502 6.502 9 C 0.113 3.887 10 N -0.374 5.374 11 C 0.254 3.746 12 N -0.543 5.543 13 C 0.195 3.805 14 N -0.288 5.288 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.401 0.599 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.219 0.781 39 H 0.218 0.782 40 H 0.398 0.602 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -5.222 33.182 33.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.005 4.005 6 N -0.383 5.383 7 C 0.278 3.722 8 O -0.374 6.374 9 C -0.014 4.014 10 N -0.165 5.165 11 C -0.043 4.043 12 N -0.270 5.270 13 C -0.108 4.108 14 N -0.114 5.114 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.235 0.765 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.236 0.764 39 H 0.234 0.766 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.350 -3.087 31.814 32.050 hybrid contribution -0.145 -1.366 0.081 1.376 sum -2.495 -4.454 31.895 32.301 Atomic orbital electron populations 1.22175 0.94871 1.02205 1.02879 1.20783 0.94247 0.97721 0.83141 0.89059 1.22105 0.94328 1.02202 0.98873 1.21450 0.93701 0.98008 0.87384 1.45891 1.06897 1.57787 1.27677 1.20456 0.82854 0.81459 0.87409 1.90872 1.54845 1.43511 1.48191 1.21547 0.76513 1.03956 0.99376 1.49991 1.06417 1.47214 1.12906 1.26086 0.87245 0.96149 0.94842 1.70540 1.17727 1.23337 1.15395 1.26080 0.96960 0.96919 0.90839 1.78245 0.99374 1.22715 1.11086 1.46094 1.69358 1.13963 1.09512 1.20279 0.76753 0.87213 0.83848 1.90701 1.48395 1.15706 1.84430 1.23287 1.04488 1.03493 0.96314 1.84774 1.87144 1.16896 1.02718 1.22314 1.50443 0.98766 0.95342 0.89391 1.24719 0.93373 0.98301 0.94966 1.69938 1.43371 1.35804 1.02568 0.86729 0.81116 0.84857 0.79107 1.19192 1.19945 1.15952 0.91434 0.92427 0.91807 0.90455 0.89626 0.90983 0.90654 0.76516 0.85141 0.86265 0.76445 0.76566 0.76742 0.88503 0.88487 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.15 1.34 2.57 -67.93 -0.17 1.17 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.14 -0.70 4.87 -26.74 -0.13 -0.83 16 5 C 0.12 0.89 5.56 -4.04 -0.02 0.87 16 6 N -0.73 -3.72 5.56 -60.29 -0.33 -4.05 16 7 C 0.50 4.01 7.87 -10.99 -0.09 3.92 16 8 O -0.50 -7.24 15.75 5.56 0.09 -7.15 16 9 C 0.11 0.45 7.03 -5.19 -0.04 0.41 16 10 N -0.37 -3.08 3.40 -63.81 -0.22 -3.29 16 11 C 0.25 1.77 12.63 -90.66 -1.14 0.62 16 12 N -0.54 -5.48 11.19 -15.83 -0.18 -5.65 16 13 C 0.19 2.03 13.03 -91.80 -1.20 0.84 16 14 N -0.29 -3.44 11.83 29.29 0.35 -3.09 16 15 N -0.73 -8.42 4.53 -53.81 -0.24 -8.66 16 16 C 0.53 9.13 7.81 -10.99 -0.09 9.04 16 17 O -0.52 -10.84 15.53 5.55 0.09 -10.76 16 18 C -0.13 -2.41 6.16 36.00 0.22 -2.19 16 19 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 20 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 21 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.86 13.97 55.49 0.78 -26.08 16 24 Si 0.86 22.06 27.74 -169.99 -4.71 17.34 16 25 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.75 7.75 -51.93 -0.40 0.35 16 35 H 0.40 0.41 8.47 -40.82 -0.35 0.06 16 36 H 0.13 -0.11 8.09 -51.93 -0.42 -0.53 16 37 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.22 0.35 8.06 -52.48 -0.42 -0.08 16 39 H 0.22 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.40 3.53 8.60 -40.82 -0.35 3.18 16 41 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 42 H 0.10 1.73 8.14 -51.91 -0.42 1.30 16 43 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -43.00 387.77 -8.77 -51.78 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.14 Total: -1.25 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.09 Total: 0.64 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.15 Total: -50.83 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.17 Total: -17.90 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -43.00 -8.77 -51.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078570720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.684 kcal (2) G-P(sol) polarization free energy of solvation -43.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds