Wall clock time and date at job start Sat Apr 11 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47414 * 2 1 4 4 C 1.53000 * 109.46963 * 119.99721 * 2 1 3 5 5 C 1.53006 * 109.47212 * 185.00214 * 4 2 1 6 6 N 1.46496 * 109.47242 * 179.97438 * 5 4 2 7 7 C 1.34772 * 120.00214 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99940 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00069 * 180.02562 * 7 6 5 10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 6 11 11 N 1.33234 * 125.52973 * 269.69154 * 10 9 7 12 12 C 1.30835 * 109.82890 * 179.85514 * 11 10 9 13 13 N 1.34420 * 108.07758 * 0.40358 * 12 11 10 14 14 H 0.96998 * 126.82429 * 179.78474 * 13 12 11 15 15 N 1.30714 * 125.52136 * 90.00016 * 10 9 7 16 16 N 1.46496 * 109.47413 * 239.99589 * 2 1 3 17 17 C 1.34777 * 120.00069 * 85.00257 * 16 2 1 18 18 O 1.21281 * 120.00141 * 359.97438 * 17 16 2 19 19 C 1.50701 * 120.00069 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47021 * 179.97438 * 19 17 16 21 21 C 1.76204 * 100.00071 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99545 * 359.97438 * 21 20 19 23 23 C 1.38796 * 120.00141 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99939 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99990 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47165 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46907 * 119.99813 * 25 23 21 28 28 H 1.48496 * 109.47538 * 239.99749 * 25 23 21 29 29 H 1.08998 * 109.47611 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47081 * 300.00379 * 1 2 3 31 31 H 1.09009 * 109.46715 * 59.99963 * 1 2 3 32 32 H 1.08997 * 109.47467 * 65.00048 * 4 2 1 33 33 H 1.09000 * 109.46955 * 304.99813 * 4 2 1 34 34 H 1.08997 * 109.47040 * 59.99573 * 5 4 2 35 35 H 1.09000 * 109.46833 * 299.99674 * 5 4 2 36 36 H 0.97000 * 119.99972 * 359.97438 * 6 5 4 37 37 H 1.09000 * 109.46978 * 60.00374 * 9 7 6 38 38 H 1.09000 * 109.46976 * 299.99619 * 9 7 6 39 39 H 1.07996 * 125.95736 * 180.12687 * 12 11 10 40 40 H 0.97001 * 120.00413 * 265.00085 * 16 2 1 41 41 H 1.08997 * 109.47472 * 299.99763 * 19 17 16 42 42 H 1.09007 * 109.46976 * 60.00066 * 19 17 16 43 43 H 0.97002 * 119.99794 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0530 -1.3032 2.5103 7 6 5.3739 -1.3393 2.7756 8 8 6.1584 -0.8010 2.0235 9 6 5.8761 -2.0497 4.0062 10 6 7.3782 -1.9443 4.0691 11 7 8.2382 -2.8131 3.5393 12 6 9.4647 -2.4220 3.7728 13 7 9.4109 -1.2785 4.4773 14 1 10.1634 -0.7569 4.7974 15 7 8.0485 -0.9885 4.6572 16 7 2.0183 -0.6907 -1.1961 17 6 2.1471 -0.0184 -2.3571 18 8 1.8583 1.1583 -2.4118 19 6 2.6490 -0.7290 -3.5876 20 16 2.7094 0.4338 -4.9734 21 6 3.3113 -0.6318 -6.2410 22 1 3.5208 -1.6682 -6.0208 23 6 3.5172 -0.1391 -7.5221 24 7 3.2624 1.1242 -7.7903 25 14 4.1560 -1.2686 -8.8657 26 1 4.3613 -2.6308 -8.3112 27 1 3.1680 -1.3291 -9.9727 28 1 5.4459 -0.7441 -9.3817 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.7516 -1.7714 1.2057 33 1 1.6053 -0.2616 2.1370 34 1 3.8531 0.4370 1.3574 35 1 3.9994 -1.0728 0.4261 36 1 3.4256 -1.7341 3.1116 37 1 5.5875 -3.0999 3.9627 38 1 5.4418 -1.5898 4.8938 39 1 10.3635 -2.9317 3.4586 40 1 2.2491 -1.6318 -1.1525 41 1 3.6481 -1.1216 -3.3985 42 1 1.9760 -1.5508 -3.8324 43 1 3.4059 1.4685 -8.6857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078593024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:57 Heat of formation + Delta-G solvation = 2.093037 kcal Electronic energy + Delta-G solvation = -25724.312979 eV Core-core repulsion = 21739.395003 eV Total energy + Delta-G solvation = -3984.917976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.47559 -39.95988 -39.32064 -36.62631 -34.64791 -33.71133 -32.39597 -32.13326 -31.78432 -30.14762 -28.69912 -28.31723 -25.45305 -23.93859 -23.14562 -21.63292 -21.45879 -20.34133 -20.20781 -18.73410 -17.84923 -17.47164 -16.61466 -16.38778 -16.02350 -15.92997 -15.56038 -15.23667 -14.87617 -14.77388 -14.37890 -14.03368 -13.88467 -13.75832 -13.54131 -13.19687 -12.86918 -12.65107 -12.57815 -12.45343 -12.12273 -11.91390 -11.69288 -11.50895 -11.07154 -11.03674 -10.98201 -10.72301 -10.59107 -10.42972 -10.26119 -9.93265 -9.77036 -9.37333 -9.34706 -9.04575 -8.88217 -8.19321 -6.45948 -6.18539 -3.88510 1.22905 2.24315 2.37228 2.39401 2.99037 3.06803 3.13615 3.24220 3.30802 3.35834 3.67624 3.74837 4.20047 4.23624 4.42055 4.48461 4.55182 4.73229 4.77211 4.89544 5.05838 5.16694 5.18997 5.25142 5.33394 5.37250 5.57867 5.64217 5.69846 5.76382 5.81120 5.93526 5.97865 6.02751 6.10979 6.17932 6.19991 6.63540 6.68562 7.15166 7.63324 7.68506 7.73765 7.93840 8.38912 8.65526 9.27013 10.88968 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010183 B = 0.002079 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.021059 B =13462.686500 C =15657.792085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.117 3.883 6 N -0.730 5.730 7 C 0.518 3.482 8 O -0.523 6.523 9 C -0.048 4.048 10 C 0.246 3.754 11 N -0.535 5.535 12 C 0.265 3.735 13 N -0.483 5.483 14 H 0.442 0.558 15 N -0.304 5.304 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.072 3.928 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.401 0.599 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.224 0.776 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 -10.233 30.211 32.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.006 4.006 6 N -0.383 5.383 7 C 0.302 3.698 8 O -0.398 6.398 9 C -0.090 4.090 10 C -0.037 4.037 11 N -0.263 5.263 12 C -0.034 4.034 13 N -0.201 5.201 14 H 0.288 0.712 15 N -0.134 5.134 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.391 6.391 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.235 0.765 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.240 0.760 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.071 -7.434 29.606 30.795 hybrid contribution 1.365 -2.515 -0.421 2.892 sum 5.436 -9.948 29.185 31.309 Atomic orbital electron populations 1.22171 0.95011 1.02093 1.02818 1.20777 0.94151 0.97760 0.83250 0.89097 1.22105 0.94493 1.02099 0.98807 1.21423 0.93593 0.98039 0.87548 1.45900 1.07157 1.57797 1.27464 1.20199 0.82391 0.80464 0.86737 1.90794 1.55157 1.44704 1.49140 1.19876 0.86495 1.04127 0.98535 1.23266 0.96521 0.89187 0.94764 1.70357 0.99073 1.31025 1.25825 1.26094 0.98272 0.86606 0.92424 1.48073 1.07269 1.21235 1.43475 0.71199 1.77963 0.86864 1.22652 1.25896 1.46126 1.69483 1.13880 1.09572 1.20293 0.76709 0.87212 0.83773 1.90698 1.48238 1.15748 1.84398 1.23539 1.03701 1.04833 0.98407 1.85384 1.86298 1.12993 0.98748 1.22912 1.50810 0.98159 0.96311 0.90890 1.24997 0.95141 0.95548 0.97987 1.70033 1.45700 1.13208 1.21384 0.86113 0.78506 0.80155 0.80700 1.19615 1.20594 1.20578 0.92523 0.91880 0.91451 0.90539 0.89699 0.91092 0.90802 0.76524 0.85870 0.86388 0.75974 0.76902 0.89232 0.89261 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.15 0.35 -1.26 16 2 C 0.15 1.55 2.57 -67.94 -0.17 1.38 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 C -0.14 -0.92 4.87 -26.73 -0.13 -1.05 16 5 C 0.12 1.09 5.56 -4.04 -0.02 1.06 16 6 N -0.73 -5.35 5.56 -60.30 -0.33 -5.68 16 7 C 0.52 5.43 7.82 -10.99 -0.09 5.34 16 8 O -0.52 -8.43 16.03 5.56 0.09 -8.34 16 9 C -0.05 -0.35 6.33 -29.03 -0.18 -0.54 16 10 C 0.25 2.65 6.63 -156.86 -1.04 1.61 16 11 N -0.53 -5.76 11.19 -11.98 -0.13 -5.89 16 12 C 0.27 1.85 13.13 -90.66 -1.19 0.66 16 13 N -0.48 -3.43 7.45 29.53 0.22 -3.21 16 14 H 0.44 1.42 8.96 -182.33 -1.63 -0.22 16 15 N -0.30 -3.31 12.80 32.42 0.41 -2.89 16 16 N -0.74 -9.43 4.53 -53.81 -0.24 -9.67 16 17 C 0.53 9.93 7.81 -10.99 -0.09 9.85 16 18 O -0.52 -11.69 15.52 5.56 0.09 -11.61 16 19 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.47 9.50 30.94 0.29 -15.18 16 22 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 25 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 36 H 0.40 1.37 8.47 -40.82 -0.35 1.03 16 37 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.22 0.40 8.06 -52.49 -0.42 -0.03 16 40 H 0.40 4.01 8.60 -40.82 -0.35 3.66 16 41 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -43.23 390.06 -9.99 -53.22 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.32 Total: 0.21 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.14 Total: 0.94 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.66 Total: -53.18 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.18 Total: -19.94 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -43.23 -9.99 -53.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078593024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.317 kcal (2) G-P(sol) polarization free energy of solvation -43.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds