Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00485 * 2 1 4 4 H 1.09000 * 110.88414 * 32.42243 * 3 2 1 5 5 C 1.54914 * 111.00144 * 268.54653 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.87916 * 5 3 2 7 7 C 1.36936 * 125.64483 * 204.16378 * 6 5 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00358 * 359.95842 * 7 6 5 10 10 N 1.31619 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46852 * 89.99788 * 11 9 7 13 13 H 1.48497 * 109.47226 * 209.99639 * 11 9 7 14 14 H 1.48500 * 109.46864 * 330.00142 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21548 * 119.99879 * 359.97438 * 19 18 16 21 21 C 1.47843 * 120.00069 * 180.02562 * 19 18 16 22 22 C 1.40022 * 120.55943 * 179.72293 * 21 19 18 23 23 C 1.38357 * 118.28700 * 179.73369 * 22 21 19 24 24 C 1.38351 * 119.30540 * 0.55411 * 23 22 21 25 25 C 1.50697 * 119.46391 * 179.67761 * 24 23 22 26 26 F 1.39896 * 109.47186 * 210.02238 * 25 24 23 27 27 F 1.39894 * 109.47316 * 330.02623 * 25 24 23 28 28 N 1.31928 * 121.07626 * 359.70564 * 24 23 22 29 29 C 1.31699 * 121.88055 * 359.97438 * 28 24 23 30 30 H 1.08998 * 109.47560 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46858 * 300.00860 * 1 2 3 32 32 H 1.09006 * 109.47103 * 59.99918 * 1 2 3 33 33 H 1.08999 * 110.37121 * 86.03651 * 5 3 2 34 34 H 1.09003 * 110.36718 * 323.71555 * 5 3 2 35 35 H 0.96996 * 119.99954 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 37 37 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 38 38 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 39 39 H 1.08001 * 120.85542 * 359.97438 * 22 21 19 40 40 H 1.08001 * 120.34871 * 180.26131 * 23 22 21 41 41 H 1.09008 * 109.46867 * 90.02675 * 25 24 23 42 42 H 1.07998 * 119.71345 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5460 5 6 2.2697 1.7976 -1.4458 6 7 3.3607 2.7811 -1.3195 7 6 3.6220 3.8001 -2.1962 8 1 4.4485 4.4708 -2.0137 9 6 2.8247 3.9707 -3.3197 10 7 1.8173 3.1534 -3.5420 11 14 3.1807 5.3612 -4.5152 12 1 4.1219 4.8859 -5.5611 13 1 1.9142 5.8024 -5.1526 14 1 3.7893 6.5004 -3.7824 15 6 4.1211 2.4872 -0.0961 16 6 3.4498 1.2760 0.5850 17 1 3.9572 0.3504 0.3130 18 7 3.4250 1.4472 2.0397 19 6 4.4818 1.0609 2.7817 20 8 5.4551 0.5701 2.2439 21 6 4.4566 1.2331 4.2498 22 6 5.5456 0.8306 5.0326 23 6 5.4743 1.0189 6.4014 24 6 4.3357 1.5825 6.9491 25 6 4.2513 1.7825 8.4403 26 9 2.9161 1.6927 8.8480 27 9 5.0036 0.7958 9.0865 28 7 3.3224 1.9474 6.1871 29 6 3.3453 1.7946 4.8792 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.3761 2.2723 -1.8510 34 1 2.5795 0.9667 -2.0796 35 1 1.2604 3.2724 -4.3272 36 1 5.1530 2.2447 -0.3502 37 1 4.0965 3.3485 0.5715 38 1 2.6482 1.8385 2.4689 39 1 6.4203 0.3883 4.5791 40 1 6.2970 0.7245 7.0363 41 1 4.6444 2.7661 8.6979 42 1 2.4962 2.1060 4.2890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081778096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = -103.197304 kcal Electronic energy + Delta-G solvation = -29203.664557 eV Core-core repulsion = 24628.047712 eV Total energy + Delta-G solvation = -4575.616845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.43201 -47.43206 -41.01055 -39.48597 -38.10929 -35.99120 -34.35735 -33.17187 -32.71398 -31.69623 -28.99337 -27.90291 -26.79628 -26.16051 -24.47577 -24.24829 -23.17718 -21.13492 -20.69776 -19.99868 -18.59736 -18.04083 -17.95425 -17.72277 -16.97297 -16.76701 -16.26113 -15.49192 -15.48335 -15.13383 -14.99656 -14.64943 -14.35372 -14.27381 -14.19490 -14.06933 -13.79314 -13.58653 -13.42752 -13.24290 -13.07765 -12.84821 -12.31133 -11.98436 -11.78598 -11.53233 -11.35324 -11.07203 -10.89881 -10.85961 -10.47410 -10.41015 -10.22643 -9.97645 -9.86995 -9.84010 -9.73218 -9.17527 -8.84969 -8.75393 -6.96413 -5.75190 -3.18395 0.03106 0.70308 2.53127 2.86896 3.00343 3.35692 3.38653 3.40931 3.42436 3.60589 3.79016 4.03784 4.24542 4.30907 4.38961 4.43082 4.53229 4.64330 4.76322 5.02797 5.10336 5.35933 5.43812 5.44553 5.54675 5.57472 5.61371 5.63295 5.78368 5.90634 5.93615 5.99167 6.10391 6.31521 6.59656 6.75921 7.18028 7.20245 7.41534 7.51369 7.66288 7.72051 8.09674 8.21505 9.10307 9.70608 10.32436 11.28766 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.002347 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.702206 B =11926.613299 C =12462.665404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.054 3.946 4 H 0.067 0.933 5 C 0.140 3.860 6 N -0.600 5.600 7 C -0.224 4.224 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.918 3.082 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.137 3.863 17 H 0.105 0.895 18 N -0.705 5.705 19 C 0.560 3.440 20 O -0.526 6.526 21 C -0.161 4.161 22 C -0.015 4.015 23 C -0.146 4.146 24 C 0.064 3.936 25 C 0.327 3.673 26 F -0.185 7.185 27 F -0.193 7.193 28 N -0.457 5.457 29 C 0.138 3.862 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.027 0.973 35 H 0.254 0.746 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.397 0.603 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.133 0.867 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -3.730 21.930 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.005 4.005 4 H 0.085 0.915 5 C 0.014 3.986 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.033 3.967 17 H 0.123 0.877 18 N -0.356 5.356 19 C 0.345 3.655 20 O -0.403 6.403 21 C -0.166 4.166 22 C -0.042 4.042 23 C -0.166 4.166 24 C -0.075 4.075 25 C 0.273 3.727 26 F -0.166 7.166 27 F -0.175 7.175 28 N -0.165 5.165 29 C -0.021 4.021 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.232 0.768 39 H 0.175 0.825 40 H 0.170 0.830 41 H 0.150 0.850 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.728 -3.823 21.747 22.148 hybrid contribution 0.254 0.604 -0.791 1.027 sum 1.981 -3.220 20.956 21.294 Atomic orbital electron populations 1.22712 0.81391 1.02007 1.00118 1.87838 1.19400 1.27586 1.95149 1.24080 0.91913 0.83894 1.00623 0.91486 1.22342 0.95429 0.91929 0.88891 1.44298 1.31858 1.33147 1.23498 1.19089 1.11245 1.04146 1.00666 0.90170 1.24808 0.97983 0.99332 0.98399 1.69739 1.19950 1.38663 1.28789 0.86025 0.77100 0.81171 0.80911 1.21486 1.21595 1.20625 1.21595 0.95287 0.93462 0.89281 1.22245 0.96888 1.00571 0.77025 0.87739 1.45925 1.18673 1.62831 1.08164 1.17912 0.83384 0.78644 0.85548 1.90811 1.32807 1.43744 1.72929 1.21274 0.96961 1.03026 0.95322 1.21793 0.97715 0.92244 0.92408 1.21865 0.99173 0.99596 0.95949 1.21857 0.91822 0.97849 0.95983 1.20092 0.75266 0.91816 0.85533 1.93048 1.35239 1.97091 1.91206 1.93025 1.76069 1.65822 1.82547 1.67295 1.26951 1.16037 1.06222 1.23012 0.96528 0.92749 0.89807 0.90260 0.94738 0.93317 0.86887 0.95454 0.93543 0.94686 0.95200 0.76762 0.82482 0.83012 0.85024 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.89 101.05 1.10 1.57 16 2 O -0.38 -6.67 10.52 -35.23 -0.37 -7.04 16 3 C 0.05 0.99 3.11 -24.44 -0.08 0.92 16 4 H 0.07 1.12 7.76 -51.93 -0.40 0.72 16 5 C 0.14 3.29 5.63 -2.53 -0.01 3.27 16 6 N -0.60 -14.98 3.39 -170.07 -0.58 -15.56 16 7 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 10 N -0.92 -26.04 10.09 55.49 0.56 -25.48 16 11 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 15 C 0.13 2.73 6.98 -3.07 -0.02 2.71 16 16 C 0.14 2.45 2.99 -65.96 -0.20 2.25 16 17 H 0.10 2.05 7.70 -51.93 -0.40 1.65 16 18 N -0.71 -9.85 5.09 -52.85 -0.27 -10.11 16 19 C 0.56 7.99 7.78 -12.33 -0.10 7.90 16 20 O -0.53 -9.35 16.15 5.32 0.09 -9.27 16 21 C -0.16 -1.79 5.89 -104.82 -0.62 -2.41 16 22 C -0.02 -0.15 9.72 -38.87 -0.38 -0.52 16 23 C -0.15 -1.16 9.42 -39.50 -0.37 -1.53 16 24 C 0.06 0.57 6.58 -82.51 -0.54 0.03 16 25 C 0.33 2.35 5.72 36.00 0.21 2.56 16 26 F -0.18 -1.81 17.05 2.25 0.04 -1.77 16 27 F -0.19 -1.49 16.45 2.25 0.04 -1.45 16 28 N -0.46 -4.82 9.94 -9.14 -0.09 -4.91 16 29 C 0.14 1.38 10.71 -17.13 -0.18 1.19 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.40 4.36 6.59 -40.82 -0.27 4.09 16 39 H 0.16 1.41 7.74 -52.49 -0.41 1.00 16 40 H 0.15 0.81 7.59 -52.49 -0.40 0.41 16 41 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.17 1.29 6.42 -52.49 -0.34 0.95 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -33.09 363.38 -6.59 -39.68 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.02 Total: 2.55 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -1.44 Total: 11.35 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.38 Total: -56.06 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.28 Total: -16.31 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.09 -6.59 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081778096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.516 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds