Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46496 * 109.47210 * 2 1 4 4 C 1.35638 * 125.67926 * 265.39460 * 3 2 1 5 5 C 1.35519 * 108.85245 * 180.26526 * 4 3 2 6 6 Cl 1.73596 * 126.07137 * 179.74589 * 5 4 3 7 7 C 1.39880 * 107.85135 * 359.76789 * 5 4 3 8 8 C 1.37634 * 125.67727 * 85.26150 * 3 2 1 9 9 C 1.46669 * 126.22175 * 0.02562 * 8 3 2 10 10 O 1.21690 * 120.00447 * 354.41628 * 9 8 3 11 11 N 1.34777 * 120.00145 * 174.40813 * 9 8 3 12 12 C 1.46500 * 120.00412 * 184.89746 * 11 9 8 13 13 H 1.09001 * 109.45960 * 325.01034 * 12 11 9 14 14 C 1.53036 * 109.44615 * 84.97010 * 12 11 9 15 15 C 1.53194 * 109.31541 * 181.37960 * 14 12 11 16 16 N 1.46928 * 108.77363 * 305.36926 * 15 14 12 17 17 C 1.36938 * 120.62521 * 233.62708 * 16 15 14 18 18 H 1.07995 * 120.00373 * 31.55383 * 17 16 15 19 19 C 1.38816 * 119.99736 * 211.54941 * 17 16 15 20 20 N 1.31620 * 119.99777 * 10.28690 * 19 17 16 21 21 Si 1.86794 * 120.00035 * 190.28281 * 19 17 16 22 22 H 1.48505 * 109.47215 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47143 * 119.99970 * 21 19 17 24 24 H 1.48495 * 109.47317 * 240.00144 * 21 19 17 25 25 C 1.46919 * 118.74218 * 53.60598 * 16 15 14 26 26 C 1.53036 * 109.46213 * 205.03277 * 12 11 9 27 27 H 1.09001 * 109.50010 * 58.64864 * 26 12 11 28 28 O 1.42900 * 109.49695 * 298.57713 * 26 12 11 29 29 H 1.09001 * 109.47208 * 60.00383 * 1 2 3 30 30 H 1.09008 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47581 * 300.00222 * 1 2 3 32 32 H 1.09001 * 109.47724 * 239.99792 * 2 1 3 33 33 H 1.09001 * 109.47208 * 119.99617 * 2 1 3 34 34 H 1.07994 * 125.57050 * 0.02904 * 4 3 2 35 35 H 1.08003 * 126.45626 * 179.97438 * 7 5 4 36 36 H 0.97008 * 119.99886 * 4.90888 * 11 9 8 37 37 H 1.09003 * 109.49967 * 301.33777 * 14 12 11 38 38 H 1.09008 * 109.49885 * 61.43220 * 14 12 11 39 39 H 1.09001 * 109.58944 * 185.57677 * 15 14 12 40 40 H 1.09004 * 109.70100 * 65.22227 * 15 14 12 41 41 H 0.96998 * 119.99759 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.59181 * 186.60677 * 25 16 15 43 43 H 1.08995 * 109.70852 * 66.24300 * 25 16 15 44 44 H 0.96712 * 114.00042 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3654 2.0975 -1.0982 5 6 2.7737 3.3290 -0.7067 6 17 3.3226 4.6035 -1.7498 7 6 2.6747 3.3906 0.6872 8 6 2.1988 2.1688 1.1142 9 6 1.9388 1.7773 2.5036 10 8 1.4279 0.7000 2.7469 11 7 2.2659 2.6108 3.5110 12 6 2.1060 2.1776 4.9013 13 1 1.2276 1.5375 4.9836 14 6 3.3480 1.3974 5.3379 15 6 3.1632 0.9164 6.7806 16 7 2.8491 2.0745 7.6285 17 6 3.5871 2.3374 8.7517 18 1 4.6350 2.0782 8.7822 19 6 2.9881 2.9371 9.8510 20 7 1.6794 3.0690 9.8970 21 14 4.0395 3.5567 11.2652 22 1 5.4707 3.2900 10.9718 23 1 3.8320 5.0175 11.4333 24 1 3.6518 2.8546 12.5149 25 6 1.7286 2.9454 7.2482 26 6 1.9296 3.4036 5.8002 27 1 1.0586 3.9718 5.4738 28 8 3.0946 4.2269 5.7180 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3267 1.7430 -2.1176 35 1 2.9244 4.2357 1.3116 36 1 2.6070 3.4976 3.3155 37 1 3.4864 0.5374 4.6826 38 1 4.2234 2.0444 5.2795 39 1 4.0826 0.4464 7.1298 40 1 2.3451 0.1975 6.8263 41 1 1.2608 3.4877 10.6653 42 1 1.7014 3.8142 7.9059 43 1 0.7912 2.3953 7.3305 44 1 3.0521 5.0243 6.2636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090816057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -22.891125 kcal Electronic energy + Delta-G solvation = -28042.665790 eV Core-core repulsion = 24022.327962 eV Total energy + Delta-G solvation = -4020.337828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.71505 -39.44702 -37.79209 -36.60100 -34.82516 -34.70537 -33.94678 -32.15241 -30.21448 -29.45090 -29.15251 -28.66173 -25.22740 -23.90615 -23.02943 -22.21029 -21.55094 -20.71923 -19.83660 -19.19189 -18.05512 -17.20802 -16.11409 -15.98599 -15.64619 -15.46829 -15.03940 -14.79101 -14.47215 -14.26113 -14.07899 -13.83469 -13.77371 -13.32769 -13.25348 -13.01637 -12.86056 -12.74570 -12.31799 -12.14752 -12.02035 -11.62088 -11.47936 -11.24366 -11.18985 -11.02960 -10.84364 -10.58384 -10.50864 -10.22162 -10.03304 -9.90706 -9.68993 -9.19900 -8.92085 -8.79134 -8.55374 -8.38520 -6.64487 -5.83135 -3.29676 1.26912 1.91028 2.24725 2.61664 3.31033 3.33896 3.42401 3.44816 3.45641 4.43541 4.45372 4.60843 4.67242 4.77983 4.86149 4.97565 5.03682 5.28249 5.30466 5.38335 5.42579 5.45272 5.54748 5.55950 5.73637 5.89372 5.92905 6.02765 6.20139 6.22078 6.24642 6.42941 6.52151 6.57256 6.76982 6.80642 6.83290 6.97795 7.15922 7.45252 7.67517 7.76623 8.22925 8.29842 8.44024 9.17350 9.78254 10.36621 11.25345 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.002622 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.451378 B =10675.781387 C =11640.161004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.400 5.400 4 C 0.028 3.972 5 C -0.122 4.122 6 Cl -0.053 7.053 7 C -0.132 4.132 8 C -0.027 4.027 9 C 0.584 3.416 10 O -0.548 6.548 11 N -0.703 5.703 12 C 0.165 3.835 13 H 0.093 0.907 14 C -0.136 4.136 15 C 0.148 3.852 16 N -0.583 5.583 17 C -0.243 4.243 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.909 5.909 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.147 3.853 26 C 0.072 3.928 27 H 0.044 0.956 28 O -0.560 6.560 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.175 0.825 35 H 0.153 0.847 36 H 0.404 0.596 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.253 0.747 42 H 0.097 0.903 43 H 0.027 0.973 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 -0.575 -22.472 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.022 4.022 3 N -0.073 5.073 4 C -0.109 4.109 5 C -0.155 4.155 6 Cl -0.025 7.025 7 C -0.158 4.158 8 C -0.142 4.142 9 C 0.370 3.630 10 O -0.428 6.428 11 N -0.353 5.353 12 C 0.061 3.939 13 H 0.111 0.889 14 C -0.176 4.176 15 C 0.022 3.978 16 N -0.305 5.305 17 C -0.373 4.373 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.020 3.980 26 C 0.011 3.989 27 H 0.062 0.938 28 O -0.365 6.365 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.193 0.807 35 H 0.171 0.829 36 H 0.240 0.760 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.045 0.955 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.349 -2.044 -22.582 22.714 hybrid contribution 0.464 1.393 0.833 1.688 sum -0.885 -0.651 -21.748 21.776 Atomic orbital electron populations 1.22078 0.93649 1.03285 1.03091 1.22106 0.96311 0.78681 1.05102 1.44037 1.46568 1.11933 1.04726 1.21664 1.05481 0.91483 0.92273 1.19875 1.12720 0.91388 0.91489 1.98322 1.88730 1.49562 1.65864 1.21239 1.04276 0.96986 0.93290 1.20196 1.13143 0.92283 0.88533 1.16912 0.78457 0.84483 0.83117 1.90792 1.44343 1.22757 1.84874 1.45919 1.65277 1.18052 1.06027 1.21065 0.99842 0.95506 0.77447 0.88925 1.22319 0.97796 0.98871 0.98641 1.20897 0.98497 0.89891 0.88559 1.43840 1.35671 1.25017 1.25981 1.19220 0.91537 1.36305 0.90194 0.91750 1.25155 0.95384 1.01959 0.97186 1.69956 1.07783 1.47396 1.30303 0.86170 0.79829 0.78194 0.82279 1.20243 1.21633 1.21720 1.21447 0.90188 0.96892 0.89518 1.22864 0.86883 0.90332 0.98837 0.93825 1.86346 1.41326 1.38379 1.70490 0.92437 0.90528 0.91001 0.89205 0.87310 0.80743 0.82928 0.76041 0.93068 0.91079 0.92444 0.96250 0.93645 0.88471 0.95454 0.77734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 10.17 37.15 0.38 -1.03 16 2 C 0.10 0.88 6.10 -4.05 -0.02 0.86 16 3 N -0.40 -4.30 2.76 -112.83 -0.31 -4.61 16 4 C 0.03 0.26 11.35 -16.84 -0.19 0.07 16 5 C -0.12 -1.30 6.66 -39.94 -0.27 -1.57 16 6 Cl -0.05 -0.52 29.30 -51.86 -1.52 -2.04 16 7 C -0.13 -1.52 10.35 -39.09 -0.40 -1.92 16 8 C -0.03 -0.35 6.88 -81.98 -0.56 -0.91 16 9 C 0.58 8.71 7.74 -12.86 -0.10 8.61 16 10 O -0.55 -9.37 13.89 5.20 0.07 -9.30 16 11 N -0.70 -10.34 5.04 -55.08 -0.28 -10.62 16 12 C 0.16 2.85 2.24 -67.89 -0.15 2.69 16 13 H 0.09 1.73 7.51 -51.93 -0.39 1.34 16 14 C -0.14 -2.52 5.51 -26.61 -0.15 -2.66 16 15 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 16 N -0.58 -14.11 2.93 -172.32 -0.50 -14.61 16 17 C -0.24 -6.47 9.58 -15.06 -0.14 -6.61 16 18 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 19 C 0.00 0.03 5.06 -17.43 -0.09 -0.06 16 20 N -0.91 -25.37 11.04 55.49 0.61 -24.75 16 21 Si 0.91 21.19 29.57 -169.99 -5.03 16.17 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.15 3.27 4.90 -3.71 -0.02 3.25 16 26 C 0.07 1.28 3.38 -26.61 -0.09 1.19 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 O -0.56 -9.64 12.08 -35.23 -0.43 -10.07 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.07 0.82 7.60 -51.93 -0.39 0.42 16 32 H 0.09 0.54 8.12 -51.93 -0.42 0.11 16 33 H 0.11 1.18 6.73 -51.93 -0.35 0.83 16 34 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.15 1.56 7.45 -52.48 -0.39 1.16 16 36 H 0.40 5.34 7.15 -40.82 -0.29 5.05 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.40 7.61 -51.92 -0.40 1.00 16 39 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.10 2.38 6.11 -51.93 -0.32 2.07 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.38 5.61 9.09 45.56 0.41 6.03 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -30.56 372.73 -9.05 -39.62 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.46 Total: 9.57 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.84 Total: 5.04 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.48 Total: -54.60 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.35 Total: -19.37 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.52 Total: -2.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.56 -9.05 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090816057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.727 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds