Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46823 * 2 1 4 4 C 1.52993 * 109.47375 * 120.00304 * 2 1 3 5 5 N 1.46498 * 109.47402 * 295.00367 * 4 2 1 6 6 C 1.34770 * 120.00435 * 180.02562 * 5 4 2 7 7 O 1.21358 * 120.00139 * 359.97438 * 6 5 4 8 8 C 1.49370 * 120.00135 * 179.97438 * 6 5 4 9 9 O 1.21353 * 120.00110 * 359.97438 * 8 6 5 10 10 N 1.34780 * 119.99554 * 180.02562 * 8 6 5 11 11 C 1.39115 * 119.99616 * 174.85724 * 10 8 6 12 12 C 1.39707 * 119.57878 * 185.38420 * 11 10 8 13 13 C 1.38651 * 119.49335 * 179.76347 * 12 11 10 14 14 C 1.38344 * 118.67236 * 0.50467 * 13 12 11 15 15 C 1.40597 * 119.13450 * 359.74034 * 14 13 12 16 16 C 1.41335 * 119.78516 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00355 * 359.97438 * 16 15 14 18 18 C 1.40032 * 119.99821 * 179.97438 * 16 15 14 19 19 N 1.30736 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99726 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47193 * 59.99866 * 20 18 16 22 22 H 1.48501 * 109.46816 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47174 * 299.99936 * 20 18 16 24 24 N 1.31933 * 119.58010 * 5.65605 * 11 10 8 25 25 C 1.52998 * 109.46846 * 240.00688 * 2 1 3 26 26 C 1.52997 * 109.47373 * 64.99881 * 25 2 1 27 27 F 1.39904 * 109.47458 * 175.00152 * 26 25 2 28 28 F 1.39906 * 109.46869 * 294.99754 * 26 25 2 29 29 H 1.08995 * 109.47387 * 59.99550 * 1 2 3 30 30 H 1.09009 * 109.46673 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46926 * 299.99233 * 1 2 3 32 32 H 1.09000 * 109.47285 * 55.00222 * 4 2 1 33 33 H 1.08999 * 109.47311 * 174.99870 * 4 2 1 34 34 H 0.97006 * 119.99593 * 359.97438 * 5 4 2 35 35 H 0.97003 * 120.00373 * 354.85148 * 10 8 6 36 36 H 1.08000 * 120.25181 * 359.97438 * 12 11 10 37 37 H 1.08006 * 120.66329 * 180.24354 * 13 12 11 38 38 H 1.08003 * 120.43626 * 179.76564 * 14 13 12 39 39 H 0.97004 * 120.00238 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.46890 * 184.99926 * 25 2 1 41 41 H 1.08997 * 109.47338 * 304.99428 * 25 2 1 42 42 H 1.08995 * 109.47325 * 54.99556 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 0.0352 2.4423 6 6 1.9966 -0.4133 3.6658 7 8 2.6270 -1.4440 3.7792 8 6 1.6018 0.3583 4.8823 9 8 0.9718 1.3893 4.7690 10 7 1.9464 -0.0900 6.1058 11 6 1.6732 0.6807 7.2313 12 6 2.1336 0.2620 8.4821 13 6 1.8646 1.0340 9.6020 14 6 1.1340 2.1983 9.4456 15 6 0.6941 2.5632 8.1610 16 6 -0.0528 3.7501 7.9855 17 1 -0.2843 4.3734 8.8365 18 6 -0.4927 4.1180 6.7080 19 7 -0.2129 3.3633 5.6777 20 14 -1.4793 5.6872 6.4758 21 1 -0.6731 6.8500 6.9264 22 1 -1.8222 5.8484 5.0400 23 1 -2.7275 5.6102 7.2767 24 7 0.9781 1.7949 7.1047 25 6 2.0400 -0.7211 -1.2493 26 6 1.6352 0.0692 -2.4953 27 9 2.1974 -0.5274 -3.6290 28 9 0.2411 0.0723 -2.6130 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6056 -1.7199 1.2950 33 1 3.1264 -0.7995 1.2054 34 1 1.1489 0.8593 2.3517 35 1 2.3847 -0.9500 6.2016 36 1 2.6977 -0.6542 8.5755 37 1 2.2148 0.7302 10.5775 38 1 0.9048 2.8192 10.2991 39 1 -0.5180 3.6180 4.7928 40 1 3.1263 -0.7993 -1.2057 41 1 1.6055 -1.7197 -1.2953 42 1 1.9948 1.0944 -2.4080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119452921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = -122.540618 kcal Electronic energy + Delta-G solvation = -29119.813723 eV Core-core repulsion = 24543.358089 eV Total energy + Delta-G solvation = -4576.455634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.35261 -47.36096 -40.27478 -38.77297 -37.43867 -36.96785 -34.51677 -33.61970 -32.99062 -30.40484 -29.53845 -29.22147 -27.25873 -25.74548 -24.52354 -23.23765 -21.66747 -21.04868 -20.99131 -19.57186 -18.40631 -17.97594 -17.58447 -17.12695 -16.91150 -16.37472 -15.81951 -15.76377 -15.00479 -14.79749 -14.71211 -14.51079 -14.42925 -14.02579 -13.78435 -13.72459 -13.45972 -13.35212 -13.08719 -12.92622 -12.87584 -12.52314 -12.04667 -12.00714 -11.60470 -11.46873 -11.30978 -11.19981 -11.08367 -11.02938 -10.91589 -10.72502 -10.53798 -10.01723 -9.81862 -9.20866 -9.11291 -9.03719 -8.05593 -7.35847 -7.08413 -6.24318 -4.47423 1.87757 2.68946 2.80930 3.06789 3.10819 3.13590 3.22389 3.41216 3.82806 3.92915 3.96676 3.99852 4.11822 4.18633 4.51589 4.59669 4.78003 4.84439 4.97311 5.02627 5.16453 5.34093 5.44152 5.53210 5.65254 5.81509 5.94626 6.04532 6.04765 6.26515 6.41310 6.55275 6.72929 6.77610 7.12987 7.22374 7.46391 7.50453 7.74223 7.86172 8.01304 8.13817 8.34188 8.60244 8.90657 8.99124 10.12083 10.39043 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.002700 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.035989 B =10367.796869 C =12384.211897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.103 4.103 3 H 0.087 0.913 4 C 0.126 3.874 5 N -0.705 5.705 6 C 0.509 3.491 7 O -0.534 6.534 8 C 0.466 3.534 9 O -0.387 6.387 10 N -0.639 5.639 11 C 0.368 3.632 12 C -0.349 4.349 13 C -0.036 4.036 14 C -0.301 4.301 15 C 0.271 3.729 16 C -0.424 4.424 17 H 0.083 0.917 18 C 0.060 3.940 19 N -0.663 5.663 20 Si 0.899 3.101 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.267 1.267 24 N -0.474 5.474 25 C -0.164 4.164 26 C 0.263 3.737 27 F -0.208 7.208 28 F -0.200 7.200 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.415 0.585 35 H 0.411 0.589 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.272 0.728 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.248 -5.563 -15.046 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.122 4.122 3 H 0.105 0.895 4 C 0.002 3.998 5 N -0.360 5.360 6 C 0.290 3.710 7 O -0.411 6.411 8 C 0.243 3.757 9 O -0.250 6.250 10 N -0.287 5.287 11 C 0.130 3.870 12 C -0.375 4.375 13 C -0.060 4.060 14 C -0.324 4.324 15 C 0.146 3.854 16 C -0.454 4.454 17 H 0.101 0.899 18 C -0.169 4.169 19 N -0.282 5.282 20 Si 0.723 3.277 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.191 1.191 24 N -0.194 5.194 25 C -0.203 4.203 26 C 0.209 3.791 27 F -0.189 7.189 28 F -0.181 7.181 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.252 0.748 35 H 0.247 0.753 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.866 -5.269 -16.230 17.303 hybrid contribution -0.096 0.163 0.634 0.662 sum 2.770 -5.106 -15.596 16.643 Atomic orbital electron populations 1.22288 0.93512 1.03217 1.03877 1.21313 0.97722 1.00325 0.92842 0.89504 1.21371 1.00249 0.95449 0.82708 1.45711 1.57122 1.28288 1.04846 1.20826 0.79585 0.85346 0.85200 1.90700 1.39198 1.24160 1.87005 1.20107 0.83994 0.87491 0.84141 1.91210 1.30096 1.19106 1.84548 1.42991 1.59269 1.22136 1.04297 1.18546 0.93593 0.91261 0.83632 1.20516 1.18773 1.05609 0.92556 1.20584 0.95419 0.93906 0.96089 1.21654 1.11449 1.00977 0.98287 1.18362 0.89591 0.91587 0.85873 1.19556 1.27522 1.04265 0.94073 0.89882 1.26160 0.96476 0.97972 0.96296 1.70294 1.27592 1.31253 0.99058 0.86540 0.80688 0.82532 0.77943 1.19150 1.20373 1.19146 1.68639 1.16118 1.03439 1.31155 1.22642 1.04013 1.01141 0.92480 1.21940 0.74828 0.98880 0.83440 1.92993 1.84872 1.86454 1.54627 1.92921 1.31407 1.97703 1.96073 0.90137 0.92172 0.91840 0.90874 0.90966 0.74838 0.75311 0.88719 0.88360 0.88370 0.91641 0.88230 0.88875 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 8.52 37.16 0.32 -1.07 16 2 C -0.10 -0.72 2.42 -90.62 -0.22 -0.94 16 3 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 4 C 0.13 1.19 5.06 -4.05 -0.02 1.17 16 5 N -0.70 -8.96 5.28 -60.76 -0.32 -9.28 16 6 C 0.51 8.35 7.89 -11.63 -0.09 8.26 16 7 O -0.53 -9.38 16.48 5.49 0.09 -9.29 16 8 C 0.47 9.36 7.84 -11.62 -0.09 9.27 16 9 O -0.39 -8.94 12.24 5.49 0.07 -8.87 16 10 N -0.64 -13.04 5.37 -11.83 -0.06 -13.11 16 11 C 0.37 8.88 7.42 -155.09 -1.15 7.73 16 12 C -0.35 -7.77 9.96 -38.88 -0.39 -8.16 16 13 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 14 C -0.30 -7.37 9.83 -38.65 -0.38 -7.75 16 15 C 0.27 7.40 6.55 -85.00 -0.56 6.84 16 16 C -0.42 -11.25 9.14 -37.73 -0.34 -11.60 16 17 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 18 C 0.06 1.50 5.50 -17.35 -0.10 1.41 16 19 N -0.66 -17.29 8.99 55.55 0.50 -16.79 16 20 Si 0.90 18.43 29.56 -169.99 -5.02 13.40 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 N -0.47 -12.91 5.74 -10.28 -0.06 -12.97 16 25 C -0.16 -0.93 5.02 -26.73 -0.13 -1.06 16 26 C 0.26 1.66 5.25 37.16 0.20 1.85 16 27 F -0.21 -1.75 17.34 2.25 0.04 -1.71 16 28 F -0.20 -1.69 14.15 2.25 0.03 -1.66 16 29 H 0.08 0.64 5.43 -51.93 -0.28 0.36 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.58 7.18 -51.93 -0.37 0.21 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.41 5.12 7.12 -40.82 -0.29 4.83 16 35 H 0.41 7.19 8.18 -40.82 -0.33 6.86 16 36 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 38 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 39 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -31.95 362.24 -7.69 -39.64 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.05 Total: 10.41 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -3.36 Total: 4.75 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.06 Total: -52.15 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.16 Total: -18.16 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.07 Total: -3.36 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.95 -7.69 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119452921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.896 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds