Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46823 * 2 1 4 4 C 1.52993 * 109.47375 * 120.00304 * 2 1 3 5 5 N 1.46498 * 109.47402 * 295.00367 * 4 2 1 6 6 C 1.34770 * 120.00435 * 180.02562 * 5 4 2 7 7 O 1.21358 * 120.00139 * 359.97438 * 6 5 4 8 8 C 1.49370 * 120.00135 * 179.97438 * 6 5 4 9 9 O 1.21353 * 120.00110 * 359.97438 * 8 6 5 10 10 N 1.34780 * 119.99554 * 180.02562 * 8 6 5 11 11 C 1.39115 * 119.99616 * 174.85724 * 10 8 6 12 12 C 1.39707 * 119.57878 * 185.38420 * 11 10 8 13 13 C 1.38651 * 119.49335 * 179.76347 * 12 11 10 14 14 C 1.38344 * 118.67236 * 0.50467 * 13 12 11 15 15 C 1.40597 * 119.13450 * 359.74034 * 14 13 12 16 16 C 1.41335 * 119.78516 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00355 * 359.97438 * 16 15 14 18 18 C 1.40032 * 119.99821 * 179.97438 * 16 15 14 19 19 N 1.30736 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99726 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47193 * 59.99866 * 20 18 16 22 22 H 1.48501 * 109.46816 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47174 * 299.99936 * 20 18 16 24 24 N 1.31933 * 119.58010 * 5.65605 * 11 10 8 25 25 C 1.52998 * 109.46846 * 240.00688 * 2 1 3 26 26 C 1.52997 * 109.47373 * 64.99881 * 25 2 1 27 27 F 1.39904 * 109.47458 * 175.00152 * 26 25 2 28 28 F 1.39906 * 109.46869 * 294.99754 * 26 25 2 29 29 H 1.08995 * 109.47387 * 59.99550 * 1 2 3 30 30 H 1.09009 * 109.46673 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46926 * 299.99233 * 1 2 3 32 32 H 1.09000 * 109.47285 * 55.00222 * 4 2 1 33 33 H 1.08999 * 109.47311 * 174.99870 * 4 2 1 34 34 H 0.97006 * 119.99593 * 359.97438 * 5 4 2 35 35 H 0.97003 * 120.00373 * 354.85148 * 10 8 6 36 36 H 1.08000 * 120.25181 * 359.97438 * 12 11 10 37 37 H 1.08006 * 120.66329 * 180.24354 * 13 12 11 38 38 H 1.08003 * 120.43626 * 179.76564 * 14 13 12 39 39 H 0.97004 * 120.00238 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.46890 * 184.99926 * 25 2 1 41 41 H 1.08997 * 109.47338 * 304.99428 * 25 2 1 42 42 H 1.08995 * 109.47325 * 54.99556 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 0.0352 2.4423 6 6 1.9966 -0.4133 3.6658 7 8 2.6270 -1.4440 3.7792 8 6 1.6018 0.3583 4.8823 9 8 0.9718 1.3893 4.7690 10 7 1.9464 -0.0900 6.1058 11 6 1.6732 0.6807 7.2313 12 6 2.1336 0.2620 8.4821 13 6 1.8646 1.0340 9.6020 14 6 1.1340 2.1983 9.4456 15 6 0.6941 2.5632 8.1610 16 6 -0.0528 3.7501 7.9855 17 1 -0.2843 4.3734 8.8365 18 6 -0.4927 4.1180 6.7080 19 7 -0.2129 3.3633 5.6777 20 14 -1.4793 5.6872 6.4758 21 1 -0.6731 6.8500 6.9264 22 1 -1.8222 5.8484 5.0400 23 1 -2.7275 5.6102 7.2767 24 7 0.9781 1.7949 7.1047 25 6 2.0400 -0.7211 -1.2493 26 6 1.6352 0.0692 -2.4953 27 9 2.1974 -0.5274 -3.6290 28 9 0.2411 0.0723 -2.6130 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6056 -1.7199 1.2950 33 1 3.1264 -0.7995 1.2054 34 1 1.1489 0.8593 2.3517 35 1 2.3847 -0.9500 6.2016 36 1 2.6977 -0.6542 8.5755 37 1 2.2148 0.7302 10.5775 38 1 0.9048 2.8192 10.2991 39 1 -0.5180 3.6180 4.7928 40 1 3.1263 -0.7993 -1.2057 41 1 1.6055 -1.7197 -1.2953 42 1 1.9948 1.0944 -2.4080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119452921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = -142.667659 kcal Electronic energy + Delta-G solvation = -29120.686497 eV Core-core repulsion = 24543.358089 eV Total energy + Delta-G solvation = -4577.328408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.91102 -47.93762 -41.71133 -40.33028 -38.98206 -37.95974 -36.14664 -35.05370 -34.44172 -32.26130 -31.07930 -30.13703 -28.22575 -27.51989 -25.75769 -24.14566 -23.38093 -22.64371 -21.72518 -20.97150 -19.95074 -18.93329 -18.48967 -18.20551 -18.04086 -17.54607 -17.07447 -16.92614 -16.44694 -16.28238 -16.06479 -15.87692 -15.49882 -15.18633 -15.03497 -14.83385 -14.62152 -14.60095 -14.05798 -13.97360 -13.76116 -13.75223 -13.60103 -13.16369 -12.86004 -12.74098 -12.58718 -12.56351 -12.30288 -12.16473 -12.05781 -11.90665 -11.77330 -11.58297 -11.51476 -10.90376 -10.60436 -10.28487 -9.92688 -9.19269 -8.91272 -8.07841 -6.41788 0.38996 1.04310 1.28115 1.40645 1.43855 1.54126 1.57282 2.28660 2.39510 2.64639 2.94376 2.99108 3.40141 3.48697 3.60250 3.63887 3.88788 4.01741 4.02363 4.21278 4.33446 4.44525 4.59142 4.68183 4.69026 4.81998 4.82562 4.90807 4.94874 4.99621 5.00848 5.12513 5.25184 5.27467 5.39960 5.63983 5.72033 5.90462 5.99695 6.16506 6.30195 6.55575 6.72563 6.85969 7.04701 7.30630 8.25679 8.56312 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.002700 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.035989 B =10367.796869 C =12384.211897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 H 0.101 0.899 4 C 0.123 3.877 5 N -0.688 5.688 6 C 0.519 3.481 7 O -0.546 6.546 8 C 0.459 3.541 9 O -0.420 6.420 10 N -0.633 5.633 11 C 0.347 3.653 12 C -0.343 4.343 13 C -0.033 4.033 14 C -0.323 4.323 15 C 0.236 3.764 16 C -0.461 4.461 17 H 0.087 0.913 18 C 0.015 3.985 19 N -0.693 5.693 20 Si 0.976 3.024 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.264 1.264 24 N -0.505 5.505 25 C -0.158 4.158 26 C 0.257 3.743 27 F -0.221 7.221 28 F -0.214 7.214 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.417 0.583 35 H 0.424 0.576 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.274 0.726 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -5.809 -15.812 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.111 4.111 3 H 0.119 0.881 4 C 0.000 4.000 5 N -0.342 5.342 6 C 0.299 3.701 7 O -0.424 6.424 8 C 0.237 3.763 9 O -0.285 6.285 10 N -0.283 5.283 11 C 0.109 3.891 12 C -0.369 4.369 13 C -0.057 4.057 14 C -0.346 4.346 15 C 0.111 3.889 16 C -0.492 4.492 17 H 0.105 0.895 18 C -0.211 4.211 19 N -0.312 5.312 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.194 1.194 23 H -0.188 1.188 24 N -0.224 5.224 25 C -0.196 4.196 26 C 0.203 3.797 27 F -0.202 7.202 28 F -0.196 7.196 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.255 0.745 35 H 0.262 0.738 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.617 -5.553 -17.024 18.268 hybrid contribution -0.256 0.110 0.889 0.931 sum 3.362 -5.443 -16.135 17.357 Atomic orbital electron populations 1.22285 0.94489 1.02786 1.03334 1.21231 0.96728 1.01011 0.92172 0.88088 1.21627 1.00971 0.95282 0.82075 1.45741 1.55630 1.28180 1.04602 1.20057 0.80066 0.84896 0.85075 1.90698 1.40203 1.24447 1.87074 1.20796 0.83082 0.87370 0.85075 1.91205 1.31439 1.20655 1.85195 1.42991 1.59129 1.22317 1.03873 1.19009 0.93463 0.91164 0.85502 1.20962 1.17654 1.06443 0.91823 1.21038 0.94002 0.92719 0.97952 1.21848 1.12546 1.02432 0.97752 1.18860 0.90502 0.92394 0.87180 1.19887 1.29110 1.05030 0.95166 0.89525 1.26975 0.97291 1.01304 0.95543 1.70441 1.28465 1.32935 0.99361 0.85367 0.78832 0.77974 0.78108 1.18727 1.19441 1.18831 1.68601 1.17373 1.04689 1.31777 1.22585 1.05061 1.00648 0.91299 1.22304 0.73986 1.00384 0.82982 1.92967 1.85001 1.86842 1.55390 1.92893 1.32742 1.97808 1.96113 0.89783 0.92604 0.93229 0.90932 0.89913 0.74550 0.73775 0.85294 0.84371 0.87418 0.91463 0.86408 0.89138 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 8.52 71.98 0.61 -1.99 16 2 C -0.09 -1.10 2.42 -10.79 -0.03 -1.12 16 3 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.12 2.10 5.06 86.38 0.44 2.54 16 5 N -0.69 -16.82 5.28 -464.52 -2.45 -19.27 16 6 C 0.52 16.70 7.89 87.25 0.69 17.39 16 7 O -0.55 -18.52 16.48 -3.27 -0.05 -18.58 16 8 C 0.46 18.60 7.84 87.24 0.68 19.28 16 9 O -0.42 -19.96 12.24 -3.26 -0.04 -20.00 16 10 N -0.63 -25.83 5.37 -309.70 -1.66 -27.49 16 11 C 0.35 16.80 7.42 133.30 0.99 17.79 16 12 C -0.34 -14.79 9.96 22.72 0.23 -14.56 16 13 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 14 C -0.32 -15.93 9.83 22.87 0.22 -15.71 16 15 C 0.24 13.25 6.55 40.20 0.26 13.51 16 16 C -0.46 -25.28 9.14 23.47 0.21 -25.07 16 17 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 18 C 0.01 0.75 5.50 85.29 0.47 1.22 16 19 N -0.69 -37.20 8.99 21.84 0.20 -37.00 16 20 Si 0.98 38.48 29.56 68.60 2.03 40.51 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 24 N -0.50 -28.17 5.74 -186.43 -1.07 -29.23 16 25 C -0.16 -1.41 5.02 30.59 0.15 -1.26 16 26 C 0.26 2.70 5.25 71.98 0.38 3.08 16 27 F -0.22 -3.34 17.34 44.97 0.78 -2.56 16 28 F -0.21 -3.33 14.15 44.97 0.64 -2.69 16 29 H 0.08 1.24 5.43 -2.39 -0.01 1.23 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.05 0.88 7.18 -2.39 -0.02 0.87 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.42 10.09 7.12 -92.70 -0.66 9.43 16 35 H 0.42 14.49 8.18 -92.71 -0.76 13.73 16 36 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 39 H 0.27 13.58 8.29 -92.70 -0.77 12.81 16 40 H 0.12 0.67 8.14 -2.39 -0.02 0.66 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -70.97 362.24 3.58 -67.38 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.33 Total: 35.01 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 5.54 Total: 13.91 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -4.99 Total: -113.00 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.09 Total: -38.57 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 1.42 Total: -5.26 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -70.97 3.58 -67.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119452921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.283 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds