Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46739 * 2 1 4 4 C 1.53004 * 109.47175 * 240.00291 * 2 1 3 5 5 N 1.46498 * 109.47113 * 64.99600 * 4 2 1 6 6 C 1.34779 * 119.99828 * 180.02562 * 5 4 2 7 7 O 1.21353 * 119.99961 * 359.97438 * 6 5 4 8 8 C 1.49371 * 119.99797 * 180.02562 * 6 5 4 9 9 O 1.21354 * 120.00227 * 359.97438 * 8 6 5 10 10 N 1.34773 * 119.99439 * 179.97438 * 8 6 5 11 11 C 1.39116 * 119.99511 * 185.52997 * 10 8 6 12 12 C 1.39714 * 119.57862 * 174.99717 * 11 10 8 13 13 C 1.38645 * 119.49275 * 180.02562 * 12 11 10 14 14 C 1.38340 * 118.67489 * 359.72577 * 13 12 11 15 15 C 1.40603 * 119.13438 * 0.53868 * 14 13 12 16 16 C 1.41334 * 119.78656 * 179.72802 * 15 14 13 17 17 H 1.08005 * 119.99815 * 5.83826 * 16 15 14 18 18 C 1.40025 * 119.99870 * 185.83878 * 16 15 14 19 19 N 1.30738 * 120.00167 * 5.89956 * 18 16 15 20 20 Si 1.86802 * 119.99912 * 185.90370 * 18 16 15 21 21 H 1.48501 * 109.47150 * 264.99926 * 20 18 16 22 22 H 1.48503 * 109.47349 * 25.00182 * 20 18 16 23 23 H 1.48497 * 109.47169 * 144.99851 * 20 18 16 24 24 N 1.31938 * 119.58025 * 355.02011 * 11 10 8 25 25 C 1.52994 * 109.47543 * 119.99767 * 2 1 3 26 26 C 1.52999 * 109.47438 * 295.00713 * 25 2 1 27 27 F 1.39892 * 109.47602 * 174.99742 * 26 25 2 28 28 F 1.39905 * 109.46759 * 294.99709 * 26 25 2 29 29 H 1.08997 * 109.47590 * 60.00141 * 1 2 3 30 30 H 1.08999 * 109.46739 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47126 * 299.99883 * 1 2 3 32 32 H 1.09003 * 109.46501 * 304.99497 * 4 2 1 33 33 H 1.09000 * 109.46779 * 184.99910 * 4 2 1 34 34 H 0.97002 * 120.00182 * 0.02562 * 5 4 2 35 35 H 0.96996 * 120.00794 * 5.52961 * 10 8 6 36 36 H 1.08006 * 120.24919 * 359.97438 * 12 11 10 37 37 H 1.08006 * 120.66332 * 180.02562 * 13 12 11 38 38 H 1.08001 * 120.43502 * 180.28422 * 14 13 12 39 39 H 0.96998 * 120.00206 * 180.02562 * 19 18 16 40 40 H 1.09010 * 109.47022 * 55.00185 * 25 2 1 41 41 H 1.08999 * 109.47775 * 174.99980 * 25 2 1 42 42 H 1.08995 * 109.47313 * 54.99084 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 1.9955 -0.4135 -3.6660 7 8 2.6260 -1.4442 -3.7794 8 6 1.6008 0.3582 -4.8824 9 8 0.9708 1.3892 -4.7691 10 7 1.9444 -0.0905 -6.1060 11 6 1.6785 0.6838 -7.2307 12 6 2.1313 0.2599 -8.4826 13 6 1.8658 1.0332 -9.6023 14 6 1.1503 2.2066 -9.4441 15 6 0.7268 2.5820 -8.1570 16 6 0.0000 3.7809 -7.9788 17 1 -0.3101 4.3571 -8.8380 18 6 -0.3180 4.2216 -6.6883 19 7 0.1544 3.5887 -5.6464 20 14 -1.4173 5.7138 -6.4554 21 1 -0.5767 6.9252 -6.2787 22 1 -2.2832 5.8821 -7.6500 23 1 -2.2660 5.5205 -5.2523 24 7 1.0024 1.8094 -7.1015 25 6 2.0401 -0.7212 1.2492 26 6 1.6353 0.0689 2.4953 27 9 2.0012 -0.6465 3.6404 28 9 2.2841 1.3084 2.4927 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 3.1264 -0.7994 -1.2056 34 1 1.1488 0.8595 -2.3517 35 1 2.3771 -0.9533 -6.2024 36 1 2.6847 -0.6628 -8.5772 37 1 2.2066 0.7233 -10.5792 38 1 0.9236 2.8284 -10.2976 39 1 -0.0662 3.8937 -4.7525 40 1 1.6055 -1.7198 1.2951 41 1 3.1264 -0.7994 1.2056 42 1 0.5564 0.2236 2.4928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119452925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = -128.169793 kcal Electronic energy + Delta-G solvation = -29081.058539 eV Core-core repulsion = 24504.358805 eV Total energy + Delta-G solvation = -4576.699734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.28563 -47.28882 -40.28975 -38.79156 -37.48956 -37.02449 -34.54360 -33.66272 -33.00637 -30.41581 -29.41599 -29.19367 -27.43210 -25.77473 -24.67055 -23.24044 -21.66364 -21.05246 -20.85870 -19.57191 -18.40020 -17.93899 -17.54665 -17.13700 -16.94060 -16.37352 -15.85915 -15.80409 -15.02508 -14.85314 -14.72958 -14.51061 -14.23424 -14.05331 -13.76552 -13.71708 -13.62969 -13.33681 -13.16812 -12.90030 -12.76160 -12.61748 -12.05993 -12.03959 -11.96428 -11.58954 -11.31803 -11.23679 -11.09611 -11.00863 -10.93332 -10.71956 -10.55390 -10.03512 -9.79125 -9.21980 -9.10902 -9.05081 -8.07193 -7.36348 -7.08695 -6.29338 -4.46417 1.86614 2.67906 2.79516 3.05887 3.12097 3.14779 3.21554 3.42766 3.80195 3.91958 3.94696 3.99730 4.12155 4.17704 4.49889 4.52866 4.75712 4.83287 4.95737 5.00227 5.16442 5.28029 5.35165 5.41418 5.52041 5.76880 5.86471 5.93702 6.04653 6.25117 6.40871 6.54770 6.72455 6.77517 7.13130 7.21238 7.45855 7.49679 7.73991 7.85799 8.00616 8.13202 8.34333 8.60262 8.89142 8.98693 10.11037 10.37888 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012556 B = 0.002716 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.398443 B =10308.362138 C =12276.942566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.106 4.106 3 H 0.091 0.909 4 C 0.126 3.874 5 N -0.705 5.705 6 C 0.509 3.491 7 O -0.533 6.533 8 C 0.468 3.532 9 O -0.389 6.389 10 N -0.638 5.638 11 C 0.368 3.632 12 C -0.348 4.348 13 C -0.035 4.035 14 C -0.300 4.300 15 C 0.273 3.727 16 C -0.425 4.425 17 H 0.084 0.916 18 C 0.062 3.938 19 N -0.666 5.666 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.263 1.263 23 H -0.277 1.277 24 N -0.476 5.476 25 C -0.164 4.164 26 C 0.259 3.741 27 F -0.208 7.208 28 F -0.204 7.204 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.415 0.585 35 H 0.412 0.588 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.272 0.728 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 -7.179 14.883 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.125 4.125 3 H 0.110 0.890 4 C 0.003 3.997 5 N -0.360 5.360 6 C 0.291 3.709 7 O -0.410 6.410 8 C 0.244 3.756 9 O -0.252 6.252 10 N -0.287 5.287 11 C 0.130 3.870 12 C -0.374 4.374 13 C -0.060 4.060 14 C -0.324 4.324 15 C 0.148 3.852 16 C -0.456 4.456 17 H 0.102 0.898 18 C -0.167 4.167 19 N -0.285 5.285 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.187 1.187 23 H -0.202 1.202 24 N -0.195 5.195 25 C -0.202 4.202 26 C 0.206 3.794 27 F -0.190 7.190 28 F -0.186 7.186 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.252 0.748 35 H 0.247 0.753 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.456 -6.825 16.062 17.458 hybrid contribution 0.003 0.242 -0.582 0.630 sum 0.459 -6.583 15.480 16.827 Atomic orbital electron populations 1.22017 0.93857 1.02874 1.02881 1.21347 0.97121 1.01059 0.92993 0.89025 1.21368 1.00451 0.95303 0.82614 1.45714 1.57181 1.28269 1.04844 1.20811 0.79584 0.85339 0.85182 1.90700 1.39107 1.24189 1.86999 1.20087 0.84046 0.87312 0.84134 1.91188 1.30463 1.18979 1.84603 1.42986 1.59564 1.21816 1.04318 1.18525 0.93943 0.90912 0.83640 1.20514 1.19074 1.05346 0.92469 1.20586 0.95409 0.93880 0.96096 1.21658 1.11574 1.00768 0.98360 1.18355 0.89351 0.91658 0.85857 1.19578 1.28766 1.04125 0.93108 0.89815 1.26126 0.96379 0.97908 0.96257 1.70232 1.28921 1.30819 0.98563 0.86462 0.80526 0.81828 0.78898 1.19716 1.18652 1.20225 1.68575 1.16845 1.02807 1.31317 1.22625 1.04452 1.00633 0.92506 1.22008 0.97082 0.76872 0.83470 1.92987 1.93811 1.78624 1.53537 1.93003 1.84375 1.44477 1.96732 0.91178 0.91750 0.92239 0.90816 0.90883 0.74840 0.75291 0.88698 0.88347 0.88350 0.91625 0.88178 0.88864 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 8.83 37.16 0.33 -0.70 16 2 C -0.11 -0.74 2.39 -90.62 -0.22 -0.96 16 3 H 0.09 0.70 7.82 -51.93 -0.41 0.30 16 4 C 0.13 1.19 5.06 -4.04 -0.02 1.17 16 5 N -0.71 -8.93 5.28 -60.75 -0.32 -9.25 16 6 C 0.51 8.33 7.89 -11.62 -0.09 8.24 16 7 O -0.53 -9.33 16.48 5.49 0.09 -9.24 16 8 C 0.47 9.37 7.84 -11.62 -0.09 9.28 16 9 O -0.39 -9.00 12.35 5.49 0.07 -8.93 16 10 N -0.64 -13.02 5.37 -11.83 -0.06 -13.08 16 11 C 0.37 8.88 7.43 -155.08 -1.15 7.73 16 12 C -0.35 -7.76 9.95 -38.88 -0.39 -8.14 16 13 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 14 C -0.30 -7.37 9.83 -38.65 -0.38 -7.75 16 15 C 0.27 7.45 6.53 -85.00 -0.55 6.90 16 16 C -0.43 -11.30 9.13 -37.74 -0.34 -11.65 16 17 H 0.08 2.09 7.85 -52.48 -0.41 1.67 16 18 C 0.06 1.56 5.48 -17.35 -0.10 1.47 16 19 N -0.67 -17.41 9.17 55.55 0.51 -16.90 16 20 Si 0.90 18.46 29.56 -169.99 -5.03 13.43 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 N -0.48 -12.96 5.77 -10.27 -0.06 -13.02 16 25 C -0.16 -0.95 4.91 -26.73 -0.13 -1.08 16 26 C 0.26 1.74 5.16 37.16 0.19 1.93 16 27 F -0.21 -1.80 17.34 2.25 0.04 -1.76 16 28 F -0.20 -1.91 16.93 2.25 0.04 -1.87 16 29 H 0.07 0.55 7.18 -51.93 -0.37 0.18 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.30 6.46 -51.93 -0.34 -0.03 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.41 5.10 7.13 -40.82 -0.29 4.81 16 35 H 0.41 7.17 8.18 -40.82 -0.33 6.84 16 36 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 38 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 40 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.11 0.49 6.34 -51.93 -0.33 0.16 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -32.13 364.29 -7.58 -39.71 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.00 Total: 10.18 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -3.34 Total: 5.25 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.07 Total: -52.25 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.16 Total: -18.17 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.13 -7.58 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119452925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.464 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds