Wall clock time and date at job start Sat Apr 11 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47350 * 2 1 4 4 C 1.46502 * 119.99690 * 269.99829 * 3 2 1 5 5 C 1.50697 * 109.47041 * 269.99812 * 4 3 2 6 6 H 1.08000 * 120.00276 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99498 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00686 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99569 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47018 * 59.99883 * 9 7 5 11 11 H 1.48502 * 109.47126 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46741 * 299.99549 * 9 7 5 13 13 C 1.34775 * 120.00238 * 89.99286 * 3 2 1 14 14 O 1.21280 * 120.00034 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99911 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46807 * 179.97438 * 15 13 3 17 17 C 1.46898 * 110.99459 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46947 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47198 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17 21 21 O 1.21623 * 120.00244 * 359.72094 * 20 19 18 22 22 C 1.47169 * 119.99709 * 179.72413 * 20 19 18 23 23 C 1.38247 * 128.47463 * 179.97438 * 22 20 19 24 24 N 1.31238 * 111.88765 * 180.02562 * 23 22 20 25 25 N 1.27340 * 120.03995 * 359.97438 * 24 23 22 26 26 S 1.56637 * 109.73894 * 359.69748 * 25 24 23 27 27 H 1.08995 * 109.47409 * 300.00224 * 1 2 3 28 28 H 1.08998 * 109.47079 * 60.00584 * 1 2 3 29 29 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47610 * 239.99148 * 2 1 3 31 31 H 1.09007 * 109.47266 * 120.00016 * 2 1 3 32 32 H 1.09006 * 109.46889 * 29.99700 * 4 3 2 33 33 H 1.09000 * 109.47133 * 149.99097 * 4 3 2 34 34 H 0.97001 * 120.00811 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.47001 * 59.99355 * 15 13 3 36 36 H 1.09001 * 109.46613 * 299.99743 * 15 13 3 37 37 H 1.00894 * 110.99641 * 303.95280 * 16 15 13 38 38 H 1.08995 * 109.47478 * 60.00426 * 17 16 15 39 39 H 1.09006 * 109.47065 * 299.99823 * 17 16 15 40 40 H 1.09009 * 109.46730 * 59.99875 * 18 17 16 41 41 H 1.08998 * 109.46846 * 300.00419 * 18 17 16 42 42 H 0.97001 * 119.99790 * 359.97438 * 19 18 17 43 43 H 1.07992 * 124.05656 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1494 2.3903 -2.8775 8 7 3.3495 3.1263 -3.6177 9 14 5.9135 2.0961 -3.4170 10 1 6.1402 0.6394 -3.5953 11 1 6.1611 2.7962 -4.7031 12 1 6.8413 2.6186 -2.3819 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1671 15 6 1.9921 1.3061 2.4723 16 7 2.3107 2.2061 3.5888 17 6 2.0770 1.5459 4.8801 18 6 2.4197 2.5119 6.0161 19 7 2.1873 1.8533 7.3040 20 6 2.4178 2.5195 8.4527 21 8 2.8235 3.6656 8.4202 22 6 2.1785 1.8600 9.7464 23 6 2.3544 2.3720 11.0184 24 7 2.0412 1.4975 11.9455 25 7 1.6317 0.3378 11.6156 26 16 1.5865 0.2170 10.0545 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6875 -2.0284 33 1 2.0955 3.1410 -1.1386 34 1 3.6757 3.5174 -4.4432 35 1 2.6225 0.4188 2.5299 36 1 0.9442 1.0117 2.5301 37 1 3.2589 2.5441 3.5214 38 1 2.7075 0.6599 4.9546 39 1 1.0295 1.2538 4.9546 40 1 1.7895 3.3982 5.9418 41 1 3.4673 2.8036 5.9414 42 1 1.8633 0.9394 7.3298 43 1 2.7073 3.3717 11.2245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124159555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:31 Heat of formation + Delta-G solvation = 10.523622 kcal Electronic energy + Delta-G solvation = -25838.737423 eV Core-core repulsion = 21854.185025 eV Total energy + Delta-G solvation = -3984.552398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39695 -40.04809 -39.18768 -36.75081 -35.34114 -34.61936 -32.84492 -32.69935 -30.25484 -30.00868 -28.20739 -27.25873 -25.42700 -23.56507 -23.05216 -22.38988 -22.18820 -21.14634 -19.81414 -18.58321 -17.96896 -16.72649 -16.66215 -16.54353 -16.38614 -16.18062 -15.75367 -15.40340 -15.31928 -14.76751 -14.43608 -14.28682 -13.78352 -13.52172 -13.34203 -13.33122 -13.27224 -12.60168 -12.45965 -12.32351 -12.02110 -11.86957 -11.75833 -11.50162 -11.20088 -10.95364 -10.93118 -10.77592 -10.70894 -10.67763 -10.55022 -10.44540 -10.15515 -9.67958 -9.67170 -9.00334 -8.51107 -8.45295 -7.69049 -6.06155 -4.11269 -0.86403 0.19886 0.88142 1.40531 2.31520 2.42361 3.29346 3.34285 3.34951 3.40841 3.43388 3.68524 4.06282 4.12692 4.27868 4.43269 4.55229 4.74337 5.01756 5.01805 5.08323 5.19444 5.28180 5.36628 5.42511 5.51187 5.59027 5.60788 5.73662 5.75290 5.96942 6.18780 6.43340 6.64641 6.74579 7.05433 7.07128 7.21289 7.43656 7.46118 7.52343 7.89926 8.21333 8.39780 8.87739 9.07535 9.53839 11.01753 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.001687 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.211033 B =16594.049361 C =17237.365237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.049 3.951 18 C 0.119 3.881 19 N -0.718 5.718 20 C 0.602 3.398 21 O -0.509 6.509 22 C -0.286 4.286 23 C 0.077 3.923 24 N -0.250 5.250 25 N -0.253 5.253 26 S 0.421 5.579 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.356 0.644 38 H 0.037 0.963 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.399 0.601 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.445 -10.616 24.571 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.302 5.302 17 C -0.081 4.081 18 C -0.004 4.004 19 N -0.371 5.371 20 C 0.384 3.616 21 O -0.384 6.384 22 C -0.428 4.428 23 C -0.090 4.090 24 N -0.114 5.114 25 N -0.234 5.234 26 S 0.556 5.444 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.176 0.824 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.234 0.766 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -7.148 -10.416 25.121 28.118 hybrid contribution 2.004 0.023 -0.710 2.126 sum -5.144 -10.393 24.411 27.025 Atomic orbital electron populations 1.22225 0.96776 1.01355 1.02429 1.21409 0.93527 0.84295 1.02557 1.48254 1.63959 1.13185 1.07707 1.19258 0.96177 0.93699 0.78047 1.21381 0.96935 1.32040 1.06298 0.92627 1.24935 0.97814 0.94922 0.96411 1.69914 1.35704 1.33260 1.14359 0.86569 0.84833 0.78186 0.77867 1.20315 1.21162 1.20201 1.20124 0.79067 0.87108 0.84846 1.90691 1.45081 1.17662 1.86883 1.21908 1.02438 0.94211 0.90392 1.59951 1.33200 1.37578 0.99512 1.22080 1.01906 0.95012 0.89120 1.21412 1.02918 0.96414 0.79673 1.45748 1.68118 1.17366 1.05858 1.16409 0.78356 0.85446 0.81376 1.90907 1.44612 1.16354 1.86501 1.28071 1.13986 1.00934 0.99786 1.24530 0.97243 1.01862 0.85371 1.70722 1.13092 0.96089 1.31535 1.78927 1.18947 1.15508 1.10045 1.82593 1.44913 1.09788 1.07120 0.93041 0.91969 0.92227 0.89950 0.91969 0.95043 0.93848 0.92640 0.92730 0.88591 0.82382 0.94491 0.90137 0.89363 0.90503 0.76634 0.76588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.15 0.38 -1.69 16 2 C 0.11 1.56 5.93 -4.04 -0.02 1.54 16 3 N -0.60 -11.94 2.46 -175.05 -0.43 -12.37 16 4 C 0.25 6.30 5.16 -5.19 -0.03 6.27 16 5 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 9 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 C 0.50 9.81 7.71 -10.98 -0.08 9.73 16 14 O -0.53 -12.82 15.78 5.56 0.09 -12.73 16 15 C 0.04 0.56 4.72 -4.97 -0.02 0.53 16 16 N -0.67 -8.16 6.13 -115.05 -0.70 -8.87 16 17 C 0.05 0.38 5.80 -3.82 -0.02 0.35 16 18 C 0.12 0.96 5.93 -4.04 -0.02 0.93 16 19 N -0.72 -4.54 5.55 -61.46 -0.34 -4.88 16 20 C 0.60 5.07 7.80 -12.63 -0.10 4.97 16 21 O -0.51 -6.24 16.98 5.26 0.09 -6.16 16 22 C -0.29 -1.91 6.81 -35.95 -0.25 -2.16 16 23 C 0.08 0.54 11.55 -17.80 -0.21 0.34 16 24 N -0.25 -2.17 11.54 30.36 0.35 -1.82 16 25 N -0.25 -2.06 12.51 60.35 0.75 -1.30 16 26 S 0.42 2.02 23.05 -107.50 -2.48 -0.46 16 27 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 31 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.05 0.61 7.40 -51.93 -0.38 0.23 16 36 H 0.10 1.06 7.19 -51.93 -0.37 0.69 16 37 H 0.36 4.70 8.43 -39.29 -0.33 4.37 16 38 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.40 1.35 7.90 -40.82 -0.32 1.02 16 43 H 0.22 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -36.11 385.82 -7.78 -43.90 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.85 Total: 0.38 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.79 Total: 7.49 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.37 Total: -54.75 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.18 Total: -18.88 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.48 Total: -0.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.11 -7.78 -43.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124159555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.420 kcal (2) G-P(sol) polarization free energy of solvation -36.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds