Wall clock time and date at job start Sat Apr 11 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.81400 * 103.00212 * 2 1 4 4 C 1.50696 * 109.46951 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00680 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99567 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99786 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.47209 * 179.97438 * 7 6 4 9 9 N 1.30836 * 125.96204 * 275.27168 * 8 7 6 10 10 C 1.33236 * 109.83032 * 180.19301 * 9 8 7 11 11 C 1.50694 * 125.52867 * 179.85807 * 10 9 8 12 12 H 1.09006 * 109.71039 * 15.24967 * 11 10 9 13 13 C 1.53302 * 109.68154 * 254.71620 * 11 10 9 14 14 O 1.42959 * 109.26501 * 188.00005 * 13 11 10 15 15 C 1.42963 * 114.16675 * 62.55303 * 14 13 11 16 16 C 1.53296 * 109.22478 * 297.41672 * 15 14 13 17 17 N 1.47153 * 108.37934 * 52.30574 * 16 15 14 18 18 C 1.36940 * 120.98116 * 129.47877 * 17 16 15 19 19 H 1.08005 * 119.99726 * 211.58544 * 18 17 16 20 20 C 1.38806 * 120.00171 * 31.58343 * 18 17 16 21 21 N 1.31622 * 119.99877 * 10.50756 * 20 18 17 22 22 Si 1.86797 * 120.00177 * 190.50919 * 20 18 17 23 23 H 1.48502 * 109.46913 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47373 * 120.00013 * 22 20 18 25 25 H 1.48507 * 109.47015 * 240.00248 * 22 20 18 26 26 N 1.30718 * 108.94340 * 359.58856 * 10 9 8 27 27 N 1.34430 * 125.95962 * 95.02273 * 8 7 6 28 28 H 0.96994 * 126.82266 * 359.93296 * 27 8 7 29 29 H 1.09001 * 109.47741 * 59.99742 * 1 2 3 30 30 H 1.08998 * 109.47574 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47341 * 299.99772 * 1 2 3 32 32 H 1.08998 * 109.47081 * 60.00052 * 3 2 1 33 33 H 1.09002 * 109.47264 * 300.00414 * 3 2 1 34 34 H 0.97002 * 120.00094 * 359.97438 * 6 4 3 35 35 H 1.09002 * 109.47462 * 60.00113 * 7 6 4 36 36 H 1.09002 * 109.47278 * 300.00001 * 7 6 4 37 37 H 1.08994 * 109.51176 * 68.04915 * 13 11 10 38 38 H 1.09001 * 109.50905 * 307.94967 * 13 11 10 39 39 H 1.08997 * 109.51257 * 57.34595 * 15 14 13 40 40 H 1.09003 * 109.51015 * 177.49740 * 15 14 13 41 41 H 1.08995 * 109.67905 * 172.02387 * 16 15 14 42 42 H 1.08997 * 109.68374 * 292.54524 * 16 15 14 43 43 H 0.97000 * 119.99981 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9372 -0.0006 5 8 4.4404 0.9620 -0.0006 6 7 4.2575 3.1730 -0.0002 7 6 5.7131 3.3381 -0.0003 8 6 6.0522 4.8065 -0.0004 9 7 6.1302 5.5769 -1.0550 10 6 6.4554 6.8154 -0.6868 11 6 6.6419 7.9853 -1.6182 12 1 6.2163 7.7501 -2.5938 13 6 8.1363 8.2932 -1.7676 14 8 8.2961 9.5116 -2.4981 15 6 7.7402 10.6590 -1.8514 16 6 6.2254 10.4730 -1.7076 17 7 5.9767 9.1743 -1.0618 18 6 5.1504 9.0746 0.0257 19 1 5.3385 8.3245 0.7798 20 6 4.0714 9.9375 0.1590 21 7 3.7174 10.7088 -0.8471 22 14 3.1216 10.0041 1.7661 23 1 3.7154 9.0451 2.7320 24 1 3.1910 11.3778 2.3256 25 1 1.7030 9.6417 1.5181 26 7 6.5808 6.8524 0.6138 27 7 6.3226 5.5543 1.0835 28 1 6.3362 5.2565 2.0065 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8031 2.2371 0.8900 33 1 1.8031 2.2372 -0.8900 34 1 3.6809 3.9531 0.0001 35 1 6.1320 2.8688 -0.8905 36 1 6.1321 2.8681 0.8895 37 1 8.6236 7.4798 -2.3050 38 1 8.5866 8.3988 -0.7806 39 1 8.1883 10.7735 -0.8645 40 1 7.9426 11.5477 -2.4494 41 1 5.8140 11.2734 -1.0927 42 1 5.7583 10.4894 -2.6923 43 1 2.9631 11.3116 -0.7541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130823829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:37 Heat of formation + Delta-G solvation = 50.943074 kcal Electronic energy + Delta-G solvation = -27448.630290 eV Core-core repulsion = 23465.830611 eV Total energy + Delta-G solvation = -3982.799679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.98457 -39.85433 -38.34371 -35.41192 -34.60785 -32.88949 -31.86846 -31.16108 -30.49755 -29.70172 -29.07954 -26.98207 -26.59188 -23.90593 -23.37627 -21.53302 -21.06513 -20.44323 -19.36679 -18.28157 -17.30318 -16.99041 -16.72573 -16.09142 -16.03857 -15.65750 -15.10981 -14.76065 -14.53794 -14.42683 -14.32557 -14.13292 -14.03715 -13.74169 -13.58183 -13.32281 -13.20456 -12.75130 -12.64966 -12.59646 -11.85576 -11.71202 -11.22195 -11.10423 -10.88503 -10.58242 -10.42698 -10.33297 -10.28368 -10.17141 -9.88268 -9.76872 -9.58011 -9.49727 -9.38011 -8.69694 -8.56826 -7.98005 -6.71071 -5.85202 -3.34289 1.08284 1.67741 2.18437 2.24873 2.71101 2.89365 3.26724 3.30951 3.35091 3.36894 3.90283 4.33709 4.36347 4.50866 4.59656 4.73153 4.77543 4.79379 4.85065 4.96467 5.18219 5.33697 5.34858 5.35409 5.54408 5.75157 5.81330 5.92278 6.02109 6.18236 6.30968 6.47698 6.52388 6.54530 6.76763 7.02716 7.06249 7.20289 7.49989 7.78902 7.84668 7.88236 8.33411 8.39033 9.12586 9.69857 10.28294 11.23451 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.002832 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.805849 B = 9884.284670 C =11290.551806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.184 6.184 3 C -0.130 4.130 4 C 0.536 3.464 5 O -0.518 6.518 6 N -0.721 5.721 7 C 0.210 3.790 8 C 0.239 3.761 9 N -0.513 5.513 10 C 0.255 3.745 11 C 0.224 3.776 12 H 0.066 0.934 13 C 0.062 3.938 14 O -0.388 6.388 15 C 0.033 3.967 16 C 0.148 3.852 17 N -0.586 5.586 18 C -0.255 4.255 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.291 1.291 26 N -0.257 5.257 27 N -0.482 5.482 28 H 0.436 0.564 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.410 0.590 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.032 0.968 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 -14.918 2.760 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.040 5.960 3 C -0.281 4.281 4 C 0.321 3.679 5 O -0.393 6.393 6 N -0.375 5.375 7 C 0.084 3.916 8 C -0.040 4.040 9 N -0.242 5.242 10 C -0.027 4.027 11 C 0.115 3.885 12 H 0.083 0.917 13 C -0.018 4.018 14 O -0.307 6.307 15 C -0.045 4.045 16 C 0.023 3.977 17 N -0.312 5.312 18 C -0.385 4.385 19 H 0.107 0.893 20 C -0.194 4.194 21 N -0.549 5.549 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.218 1.218 26 N -0.085 5.085 27 N -0.201 5.201 28 H 0.280 0.720 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.245 0.755 35 H 0.125 0.875 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.051 0.949 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.026 -15.780 2.585 15.991 hybrid contribution -2.172 1.383 1.756 3.117 sum -2.146 -14.397 4.341 15.189 Atomic orbital electron populations 1.23549 0.95659 1.06791 1.05088 1.87479 1.04798 1.05681 1.98048 1.23511 0.97188 0.99695 1.07687 1.19589 0.89037 0.82951 0.76335 1.90770 1.61939 1.38264 1.48326 1.45848 1.07260 1.08427 1.76012 1.19531 0.81113 0.85854 1.05076 1.23881 1.00607 0.95521 0.84007 1.70293 1.22135 1.02486 1.29271 1.24064 0.96311 0.92405 0.89936 1.19525 0.93565 0.82981 0.92421 0.91702 1.22860 0.95445 0.87135 0.96328 1.87820 1.79305 1.16037 1.47513 1.23401 0.97402 0.87273 0.96428 1.21444 0.89637 0.89018 0.97636 1.43986 1.53165 0.99844 1.34211 1.19768 1.03221 1.18134 0.97329 0.89329 1.25189 0.96508 1.00486 0.97178 1.69991 1.28288 1.27366 1.29284 0.86233 0.79529 0.77627 0.83428 1.20460 1.21421 1.21834 1.78406 1.23283 0.94005 1.12785 1.48278 1.54354 1.07559 1.09940 0.71958 0.90316 0.87712 0.90424 0.86934 0.86699 0.75517 0.87524 0.89043 0.89683 0.93316 0.93917 0.89910 0.88721 0.94944 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 10.76 101.05 1.09 0.23 16 2 S -0.18 -1.80 21.52 -107.50 -2.31 -4.12 16 3 C -0.13 -1.07 6.42 36.00 0.23 -0.84 16 4 C 0.54 5.80 7.85 -10.98 -0.09 5.72 16 5 O -0.52 -7.38 15.86 5.56 0.09 -7.29 16 6 N -0.72 -7.16 5.55 -61.47 -0.34 -7.50 16 7 C 0.21 2.18 6.30 -5.19 -0.03 2.15 16 8 C 0.24 3.31 7.61 -155.69 -1.18 2.13 16 9 N -0.51 -9.12 11.19 -8.16 -0.09 -9.21 16 10 C 0.26 5.14 6.15 -156.86 -0.96 4.17 16 11 C 0.22 4.84 3.63 -68.56 -0.25 4.59 16 12 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 13 C 0.06 1.18 6.27 37.31 0.23 1.41 16 14 O -0.39 -7.74 10.74 -35.23 -0.38 -8.12 16 15 C 0.03 0.64 6.98 37.31 0.26 0.90 16 16 C 0.15 3.47 5.38 -3.53 -0.02 3.45 16 17 N -0.59 -14.46 3.03 -165.59 -0.50 -14.96 16 18 C -0.25 -6.77 8.76 -15.06 -0.13 -6.90 16 19 H 0.09 2.34 4.90 -52.48 -0.26 2.08 16 20 C 0.00 0.13 5.06 -17.43 -0.09 0.05 16 21 N -0.90 -25.55 11.15 55.49 0.62 -24.93 16 22 Si 0.90 21.37 29.57 -169.99 -5.03 16.34 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 N -0.26 -4.99 10.00 32.42 0.32 -4.66 16 27 N -0.48 -6.84 7.45 32.62 0.24 -6.60 16 28 H 0.44 4.50 8.96 -182.34 -1.63 2.87 16 29 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.11 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.11 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.41 3.88 8.46 -40.82 -0.35 3.54 16 35 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.09 2.42 6.35 -51.93 -0.33 2.09 16 42 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -34.29 371.36 -9.92 -44.21 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.20 Total: 4.19 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: -0.94 Total: 17.06 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: 0.25 Total: -67.87 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.29 Total: -15.41 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.31 Total: -4.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.29 -9.92 -44.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130823829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.151 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds