Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.81400 * 103.00212 * 2 1 4 4 C 1.50696 * 109.46951 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00680 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99567 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99786 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.47209 * 179.97438 * 7 6 4 9 9 N 1.30836 * 125.96204 * 275.27168 * 8 7 6 10 10 C 1.33236 * 109.83032 * 180.19301 * 9 8 7 11 11 C 1.50694 * 125.52867 * 179.85807 * 10 9 8 12 12 H 1.09006 * 109.71039 * 15.24967 * 11 10 9 13 13 C 1.53302 * 109.68154 * 254.71620 * 11 10 9 14 14 O 1.42959 * 109.26501 * 188.00005 * 13 11 10 15 15 C 1.42963 * 114.16675 * 62.55303 * 14 13 11 16 16 C 1.53296 * 109.22478 * 297.41672 * 15 14 13 17 17 N 1.47153 * 108.37934 * 52.30574 * 16 15 14 18 18 C 1.36940 * 120.98116 * 129.47877 * 17 16 15 19 19 H 1.08005 * 119.99726 * 211.58544 * 18 17 16 20 20 C 1.38806 * 120.00171 * 31.58343 * 18 17 16 21 21 N 1.31622 * 119.99877 * 10.50756 * 20 18 17 22 22 Si 1.86797 * 120.00177 * 190.50919 * 20 18 17 23 23 H 1.48502 * 109.46913 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47373 * 120.00013 * 22 20 18 25 25 H 1.48507 * 109.47015 * 240.00248 * 22 20 18 26 26 N 1.30718 * 108.94340 * 359.58856 * 10 9 8 27 27 N 1.34430 * 125.95962 * 95.02273 * 8 7 6 28 28 H 0.96994 * 126.82266 * 359.93296 * 27 8 7 29 29 H 1.09001 * 109.47741 * 59.99742 * 1 2 3 30 30 H 1.08998 * 109.47574 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47341 * 299.99772 * 1 2 3 32 32 H 1.08998 * 109.47081 * 60.00052 * 3 2 1 33 33 H 1.09002 * 109.47264 * 300.00414 * 3 2 1 34 34 H 0.97002 * 120.00094 * 359.97438 * 6 4 3 35 35 H 1.09002 * 109.47462 * 60.00113 * 7 6 4 36 36 H 1.09002 * 109.47278 * 300.00001 * 7 6 4 37 37 H 1.08994 * 109.51176 * 68.04915 * 13 11 10 38 38 H 1.09001 * 109.50905 * 307.94967 * 13 11 10 39 39 H 1.08997 * 109.51257 * 57.34595 * 15 14 13 40 40 H 1.09003 * 109.51015 * 177.49740 * 15 14 13 41 41 H 1.08995 * 109.67905 * 172.02387 * 16 15 14 42 42 H 1.08997 * 109.68374 * 292.54524 * 16 15 14 43 43 H 0.97000 * 119.99981 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9372 -0.0006 5 8 4.4404 0.9620 -0.0006 6 7 4.2575 3.1730 -0.0002 7 6 5.7131 3.3381 -0.0003 8 6 6.0522 4.8065 -0.0004 9 7 6.1302 5.5769 -1.0550 10 6 6.4554 6.8154 -0.6868 11 6 6.6419 7.9853 -1.6182 12 1 6.2163 7.7501 -2.5938 13 6 8.1363 8.2932 -1.7676 14 8 8.2961 9.5116 -2.4981 15 6 7.7402 10.6590 -1.8514 16 6 6.2254 10.4730 -1.7076 17 7 5.9767 9.1743 -1.0618 18 6 5.1504 9.0746 0.0257 19 1 5.3385 8.3245 0.7798 20 6 4.0714 9.9375 0.1590 21 7 3.7174 10.7088 -0.8471 22 14 3.1216 10.0041 1.7661 23 1 3.7154 9.0451 2.7320 24 1 3.1910 11.3778 2.3256 25 1 1.7030 9.6417 1.5181 26 7 6.5808 6.8524 0.6138 27 7 6.3226 5.5543 1.0835 28 1 6.3362 5.2565 2.0065 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8031 2.2371 0.8900 33 1 1.8031 2.2372 -0.8900 34 1 3.6809 3.9531 0.0001 35 1 6.1320 2.8688 -0.8905 36 1 6.1321 2.8681 0.8895 37 1 8.6236 7.4798 -2.3050 38 1 8.5866 8.3988 -0.7806 39 1 8.1883 10.7735 -0.8645 40 1 7.9426 11.5477 -2.4494 41 1 5.8140 11.2734 -1.0927 42 1 5.7583 10.4894 -2.6923 43 1 2.9631 11.3116 -0.7541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130823829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = 25.020475 kcal Electronic energy + Delta-G solvation = -27449.754378 eV Core-core repulsion = 23465.830611 eV Total energy + Delta-G solvation = -3983.923767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.30523 -40.74933 -39.98615 -36.63116 -36.11264 -34.40984 -33.17199 -32.70854 -31.83970 -30.86469 -29.61929 -28.82139 -27.58794 -25.47643 -25.25241 -22.91649 -21.91790 -21.82529 -21.05951 -19.46140 -18.56853 -18.24549 -17.87504 -17.45957 -16.88495 -16.83704 -16.68473 -16.26599 -16.07959 -15.87188 -15.53339 -15.20108 -15.02626 -14.94293 -14.59331 -14.56512 -14.40989 -14.16492 -13.45799 -13.42805 -13.18371 -13.11388 -13.01494 -12.82619 -12.74121 -12.29442 -12.11944 -11.91726 -11.48170 -11.32225 -11.16067 -11.06689 -10.95748 -10.93282 -10.57155 -10.36270 -10.26903 -8.70159 -8.66655 -7.87097 -5.38837 0.32748 0.57788 1.38678 1.41809 1.42613 1.50632 1.56605 1.61128 1.65503 2.27585 2.45703 2.69683 2.98711 3.30078 3.41222 3.57423 3.64471 3.81734 4.03860 4.12537 4.21952 4.26334 4.36183 4.37055 4.38290 4.47687 4.49425 4.60417 4.61992 4.88157 4.93042 4.95826 5.07717 5.19071 5.21806 5.25978 5.58687 5.80593 6.13070 6.23381 6.23585 6.38603 6.96794 7.03484 7.13380 7.73971 8.30501 9.19883 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.002832 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.805849 B = 9884.284670 C =11290.551806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.256 6.256 3 C -0.116 4.116 4 C 0.538 3.462 5 O -0.554 6.554 6 N -0.714 5.714 7 C 0.215 3.785 8 C 0.265 3.735 9 N -0.540 5.540 10 C 0.241 3.759 11 C 0.220 3.780 12 H 0.047 0.953 13 C 0.071 3.929 14 O -0.391 6.391 15 C 0.046 3.954 16 C 0.152 3.848 17 N -0.602 5.602 18 C -0.254 4.254 19 H 0.093 0.907 20 C -0.049 4.049 21 N -0.937 5.937 22 Si 0.961 3.039 23 H -0.270 1.270 24 H -0.290 1.290 25 H -0.293 1.293 26 N -0.289 5.289 27 N -0.465 5.465 28 H 0.454 0.546 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.414 0.586 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.008 0.992 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 -16.121 3.933 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.032 6.032 3 C -0.267 4.267 4 C 0.324 3.676 5 O -0.432 6.432 6 N -0.369 5.369 7 C 0.089 3.911 8 C -0.014 4.014 9 N -0.270 5.270 10 C -0.042 4.042 11 C 0.112 3.888 12 H 0.064 0.936 13 C -0.009 4.009 14 O -0.310 6.310 15 C -0.032 4.032 16 C 0.026 3.974 17 N -0.328 5.328 18 C -0.384 4.384 19 H 0.110 0.890 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.790 3.210 23 H -0.195 1.195 24 H -0.217 1.217 25 H -0.220 1.220 26 N -0.118 5.118 27 N -0.186 5.186 28 H 0.303 0.697 29 H 0.107 0.893 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.250 0.750 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.131 0.869 41 H 0.088 0.912 42 H 0.026 0.974 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.061 -17.000 3.785 17.416 hybrid contribution -2.145 1.632 1.381 3.028 sum -2.206 -15.368 5.166 16.363 Atomic orbital electron populations 1.23563 0.91783 1.07733 1.06182 1.87715 1.09170 1.08076 1.98262 1.23478 0.95276 0.98322 1.09625 1.19964 0.89994 0.82362 0.75317 1.90761 1.62993 1.39365 1.50072 1.45770 1.07020 1.08483 1.75598 1.19670 0.81687 0.83278 1.06492 1.24331 0.97968 0.96240 0.82866 1.70261 1.23561 1.02141 1.31004 1.23738 0.97562 0.92775 0.90081 1.19549 0.94646 0.82742 0.91896 0.93593 1.22866 0.93780 0.87506 0.96718 1.87821 1.78934 1.16353 1.47843 1.23279 0.94176 0.88308 0.97436 1.21290 0.92237 0.88234 0.95591 1.44207 1.53305 1.01196 1.34059 1.20082 1.02986 1.17451 0.97914 0.88958 1.25893 0.97733 1.00839 0.99943 1.70148 1.28846 1.28351 1.31004 0.85292 0.78043 0.77398 0.80240 1.19488 1.21700 1.21993 1.78231 1.24365 0.96661 1.12570 1.48103 1.53340 1.06058 1.11075 0.69718 0.89316 0.86880 0.89153 0.84554 0.85013 0.75027 0.87505 0.86330 0.87038 0.93349 0.93489 0.86933 0.91240 0.97400 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 10.76 113.37 1.22 0.00 16 2 S -0.26 -4.73 21.52 -56.49 -1.22 -5.94 16 3 C -0.12 -1.67 6.42 71.23 0.46 -1.21 16 4 C 0.54 10.63 7.85 87.65 0.69 11.32 16 5 O -0.55 -15.17 15.86 -3.02 -0.05 -15.22 16 6 N -0.71 -12.54 5.55 -466.78 -2.59 -15.13 16 7 C 0.21 3.93 6.30 85.63 0.54 4.47 16 8 C 0.27 6.79 7.61 138.22 1.05 7.84 16 9 N -0.54 -18.63 11.19 -179.73 -2.01 -20.64 16 10 C 0.24 9.55 6.15 138.63 0.85 10.40 16 11 C 0.22 9.54 3.63 44.22 0.16 9.70 16 12 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 13 C 0.07 2.61 6.27 72.08 0.45 3.06 16 14 O -0.39 -15.12 10.74 -148.98 -1.60 -16.72 16 15 C 0.05 1.75 6.98 72.08 0.50 2.25 16 16 C 0.15 7.28 5.38 86.35 0.46 7.74 16 17 N -0.60 -30.06 3.03 -677.82 -2.05 -32.12 16 18 C -0.25 -13.57 8.76 84.03 0.74 -12.84 16 19 H 0.09 4.83 4.90 -2.91 -0.01 4.82 16 20 C -0.05 -2.68 5.06 84.86 0.43 -2.25 16 21 N -0.94 -54.24 11.15 21.65 0.24 -54.00 16 22 Si 0.96 44.07 29.57 68.60 2.03 46.10 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 26 N -0.29 -10.88 10.00 -51.34 -0.51 -11.39 16 27 N -0.46 -12.17 7.45 -50.70 -0.38 -12.55 16 28 H 0.45 8.10 8.96 -213.10 -1.91 6.19 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.41 6.83 8.46 -92.71 -0.78 6.05 16 35 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 38 H 0.05 1.80 8.13 -2.39 -0.02 1.79 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 41 H 0.07 3.67 6.35 -2.39 -0.02 3.65 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -75.63 371.36 -2.21 -77.84 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -1.63 Total: 19.27 kcal Atomic # 6 Polarization: 32.95 SS G_CDS: 7.55 Total: 40.50 kcal Atomic # 7 Polarization: -138.52 SS G_CDS: -7.31 Total: -145.82 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.65 Total: -31.94 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -4.73 SS G_CDS: -1.22 Total: -5.94 kcal Total: -75.63 -2.21 -77.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130823829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.864 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds