Wall clock time and date at job start Sat Apr 11 2020 06:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.53004 * 109.47119 * 175.00007 * 4 2 1 6 6 H 1.09001 * 109.46968 * 305.00340 * 5 4 2 7 7 C 1.52996 * 109.47161 * 184.99876 * 5 4 2 8 8 N 1.46503 * 109.46987 * 64.99735 * 5 4 2 9 9 C 1.34780 * 120.00069 * 205.00005 * 8 5 4 10 10 O 1.21561 * 119.99772 * 0.02562 * 9 8 5 11 11 C 1.47750 * 120.00091 * 180.02562 * 9 8 5 12 12 C 1.39342 * 124.11781 * 179.97438 * 11 9 8 13 13 N 1.30090 * 112.14932 * 179.97438 * 12 11 9 14 14 S 1.55927 * 108.75231 * 0.02562 * 13 12 11 15 15 N 1.31497 * 124.11590 * 359.70222 * 11 9 8 16 16 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 17 17 C 1.46901 * 110.99793 * 275.00325 * 16 2 1 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 2 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00215 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47177 * 89.99959 * 25 23 21 27 27 H 1.48505 * 109.47036 * 210.00243 * 25 23 21 28 28 H 1.48499 * 109.46776 * 329.99732 * 25 23 21 29 29 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 30 30 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 31 31 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 33 33 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 34 34 H 1.08999 * 109.47153 * 299.99764 * 7 5 4 35 35 H 1.09003 * 109.47242 * 60.00105 * 7 5 4 36 36 H 1.09004 * 109.46882 * 180.02562 * 7 5 4 37 37 H 0.97005 * 120.00187 * 25.00288 * 8 5 4 38 38 H 1.08001 * 123.92618 * 359.97438 * 12 11 9 39 39 H 1.00898 * 110.99995 * 38.95403 * 16 2 1 40 40 H 1.09002 * 109.47401 * 59.99808 * 17 16 2 41 41 H 1.09001 * 109.46874 * 299.99821 * 17 16 2 42 42 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 43 43 H 0.96996 * 119.99520 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2677 7 6 4.0645 -1.2251 -2.6239 8 7 4.1537 -1.3341 -0.1823 9 6 5.3748 -0.9910 0.2735 10 8 5.9873 -0.0831 -0.2539 11 6 5.9688 -1.7183 1.4142 12 6 7.2223 -1.4364 1.9535 13 7 7.5141 -2.2184 2.9513 14 16 6.3276 -3.2041 3.1793 15 7 5.3768 -2.7072 2.0473 16 7 2.0196 -0.6925 1.1995 17 6 2.0823 0.2227 2.3469 18 6 2.5872 -0.5217 3.5561 19 8 2.8677 -1.6987 3.4703 20 7 2.7280 0.1207 4.7326 21 6 3.1878 -0.5564 5.8325 22 1 3.4368 -1.6046 5.7562 23 6 3.3325 0.1056 7.0454 24 7 3.7728 -0.5435 8.0999 25 14 2.9013 1.9184 7.1774 26 1 1.4719 2.0610 7.5535 27 1 3.7521 2.5554 8.2145 28 1 3.1372 2.5797 5.8689 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7516 -1.7715 -1.2055 33 1 1.6054 -0.2618 -2.1369 34 1 3.7724 -2.2742 -2.6698 35 1 3.6264 -0.6887 -3.4657 36 1 5.1509 -1.1485 -2.6696 37 1 3.6647 -2.0584 0.2388 38 1 7.8757 -0.6590 1.5858 39 1 1.4495 -1.4979 1.4101 40 1 1.0869 0.6164 2.5525 41 1 2.7587 1.0463 2.1182 42 1 2.5041 1.0619 4.8010 43 1 3.8741 -0.0812 8.9465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133779196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:42 Heat of formation + Delta-G solvation = -7.190072 kcal Electronic energy + Delta-G solvation = -28738.469722 eV Core-core repulsion = 24753.149201 eV Total energy + Delta-G solvation = -3985.320521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66852 -39.16780 -38.44928 -37.19869 -34.94722 -33.91861 -33.24149 -31.74155 -31.48489 -30.16738 -27.04733 -26.90206 -26.35800 -23.76089 -23.24810 -21.18868 -20.77504 -19.89786 -19.35061 -18.91341 -18.34386 -17.35196 -16.24158 -15.97522 -15.60267 -15.41748 -14.99296 -14.88265 -14.70687 -14.36032 -14.21952 -13.74355 -13.48042 -13.40482 -13.00127 -12.83141 -12.54961 -12.35533 -12.25271 -12.18643 -11.87854 -11.71544 -11.56573 -11.35278 -11.17363 -10.99638 -10.87904 -10.77731 -10.69563 -10.60933 -10.52249 -9.99776 -9.73644 -9.55821 -8.92582 -8.70107 -8.49384 -8.17739 -8.03883 -6.32622 -3.83333 0.96956 1.88709 1.94652 2.08928 3.01974 3.05174 3.14041 3.39314 3.57530 3.76051 4.07895 4.11647 4.51623 4.81133 4.88661 4.95357 5.10925 5.15903 5.21169 5.23264 5.32920 5.41222 5.48063 5.56725 5.58391 5.66038 5.72410 5.74504 5.79238 5.80648 5.89438 5.95024 6.02728 6.08187 6.21512 6.75469 6.86461 7.10189 7.56650 7.58335 7.90392 8.12200 8.49761 8.59156 8.93930 9.41978 9.83048 10.80475 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009332 B = 0.005040 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.573373 B = 5554.206270 C = 7640.013785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 H 0.077 0.923 4 C -0.115 4.115 5 C 0.151 3.849 6 H 0.084 0.916 7 C -0.164 4.164 8 N -0.672 5.672 9 C 0.613 3.387 10 O -0.550 6.550 11 C 0.001 3.999 12 C 0.078 3.922 13 N -0.591 5.591 14 S 0.734 5.266 15 N -0.504 5.504 16 N -0.656 5.656 17 C 0.049 3.951 18 C 0.449 3.551 19 O -0.550 6.550 20 N -0.595 5.595 21 C -0.302 4.302 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.882 5.882 25 Si 0.876 3.124 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.271 1.271 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.418 0.582 38 H 0.204 0.796 39 H 0.349 0.651 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.368 0.632 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.577 -0.433 -18.223 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.153 4.153 5 C 0.046 3.954 6 H 0.102 0.898 7 C -0.223 4.223 8 N -0.324 5.324 9 C 0.393 3.607 10 O -0.429 6.429 11 C -0.173 4.173 12 C -0.116 4.116 13 N -0.432 5.432 14 S 0.775 5.225 15 N -0.354 5.354 16 N -0.288 5.288 17 C -0.084 4.084 18 C 0.234 3.766 19 O -0.431 6.431 20 N -0.235 5.235 21 C -0.431 4.431 22 H 0.136 0.864 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.703 3.297 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.257 0.743 38 H 0.220 0.780 39 H 0.169 0.831 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.201 0.799 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.475 -2.064 -17.154 17.341 hybrid contribution -1.383 2.869 -0.218 3.192 sum -2.858 0.805 -17.372 17.623 Atomic orbital electron populations 1.22510 0.97369 1.02214 1.02041 1.21642 0.92241 0.98233 0.90895 0.90489 1.21922 0.94346 1.01728 0.97347 1.20817 0.92104 0.97292 0.85199 0.89812 1.22212 1.02155 1.01035 0.96876 1.45659 1.16702 1.37340 1.32663 1.16690 0.81616 0.81888 0.80476 1.90754 1.62449 1.30636 1.59029 1.22327 0.94585 0.98394 1.02030 1.23609 0.96024 1.00060 0.91861 1.72179 1.34598 1.14719 1.21719 1.79141 0.91041 1.28055 1.24297 1.72471 1.34169 1.15958 1.12809 1.60230 1.57224 1.09011 1.02377 1.21697 0.99618 0.95864 0.91188 1.19725 0.84747 0.88459 0.83623 1.90579 1.53128 1.15386 1.84024 1.42234 1.60592 1.11012 1.09670 1.19357 1.40337 0.97733 0.85635 0.86372 1.25006 0.97551 0.98176 0.95344 1.69613 1.45273 1.36492 1.00800 0.86720 0.79215 0.85288 0.78460 1.19731 1.20198 1.19618 0.92661 0.92266 0.92312 0.91066 0.90255 0.92565 0.91918 0.92061 0.74326 0.77980 0.83113 0.94062 0.90090 0.79921 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.16 37.15 0.34 -1.24 16 2 C 0.08 0.80 2.59 -67.71 -0.18 0.62 16 3 H 0.08 0.81 7.80 -51.93 -0.40 0.41 16 4 C -0.12 -0.98 4.54 -26.73 -0.12 -1.10 16 5 C 0.15 1.63 2.57 -67.93 -0.17 1.45 16 6 H 0.08 1.03 7.58 -51.93 -0.39 0.64 16 7 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 8 N -0.67 -9.05 3.80 -54.78 -0.21 -9.26 16 9 C 0.61 9.93 7.79 -12.37 -0.10 9.83 16 10 O -0.55 -9.77 16.47 5.31 0.09 -9.68 16 11 C 0.00 0.02 6.81 -83.71 -0.57 -0.55 16 12 C 0.08 1.28 11.22 -17.88 -0.20 1.08 16 13 N -0.59 -10.11 11.41 19.42 0.22 -9.89 16 14 S 0.73 11.95 23.69 -107.50 -2.55 9.40 16 15 N -0.50 -8.74 10.94 23.18 0.25 -8.49 16 16 N -0.66 -8.64 3.48 -107.99 -0.38 -9.01 16 17 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 18 C 0.45 9.50 7.82 -10.98 -0.09 9.42 16 19 O -0.55 -12.96 15.71 5.55 0.09 -12.87 16 20 N -0.60 -13.78 5.09 -10.96 -0.06 -13.84 16 21 C -0.30 -8.27 10.16 -14.94 -0.15 -8.42 16 22 H 0.12 3.66 7.39 -52.49 -0.39 3.28 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.44 13.96 55.50 0.77 -24.67 16 25 Si 0.88 19.54 27.74 -169.99 -4.71 14.82 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -5.60 6.52 56.52 0.37 -5.24 16 29 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.42 5.87 7.18 -40.82 -0.29 5.58 16 38 H 0.20 2.85 8.06 -52.49 -0.42 2.43 16 39 H 0.35 4.81 8.17 -39.29 -0.32 4.49 16 40 H 0.04 0.58 7.44 -51.93 -0.39 0.19 16 41 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 42 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -31.89 376.78 -7.58 -39.47 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -5.78 Total: 16.65 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -1.01 Total: 11.68 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: 0.61 Total: -75.16 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.17 Total: -22.55 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.82 kcal Atomic # 16 Polarization: 11.95 SS G_CDS: -2.55 Total: 9.40 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.89 -7.58 -39.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133779196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.282 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds