Wall clock time and date at job start Sat Apr 11 2020 06:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.53004 * 109.47119 * 175.00007 * 4 2 1 6 6 H 1.09001 * 109.46968 * 305.00340 * 5 4 2 7 7 C 1.52996 * 109.47161 * 184.99876 * 5 4 2 8 8 N 1.46503 * 109.46987 * 64.99735 * 5 4 2 9 9 C 1.34780 * 120.00069 * 205.00005 * 8 5 4 10 10 O 1.21561 * 119.99772 * 0.02562 * 9 8 5 11 11 C 1.47750 * 120.00091 * 180.02562 * 9 8 5 12 12 C 1.39342 * 124.11781 * 179.97438 * 11 9 8 13 13 N 1.30090 * 112.14932 * 179.97438 * 12 11 9 14 14 S 1.55927 * 108.75231 * 0.02562 * 13 12 11 15 15 N 1.31497 * 124.11590 * 359.70222 * 11 9 8 16 16 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 17 17 C 1.46901 * 110.99793 * 275.00325 * 16 2 1 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 2 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00215 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47177 * 89.99959 * 25 23 21 27 27 H 1.48505 * 109.47036 * 210.00243 * 25 23 21 28 28 H 1.48499 * 109.46776 * 329.99732 * 25 23 21 29 29 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 30 30 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 31 31 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 33 33 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 34 34 H 1.08999 * 109.47153 * 299.99764 * 7 5 4 35 35 H 1.09003 * 109.47242 * 60.00105 * 7 5 4 36 36 H 1.09004 * 109.46882 * 180.02562 * 7 5 4 37 37 H 0.97005 * 120.00187 * 25.00288 * 8 5 4 38 38 H 1.08001 * 123.92618 * 359.97438 * 12 11 9 39 39 H 1.00898 * 110.99995 * 38.95403 * 16 2 1 40 40 H 1.09002 * 109.47401 * 59.99808 * 17 16 2 41 41 H 1.09001 * 109.46874 * 299.99821 * 17 16 2 42 42 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 43 43 H 0.96996 * 119.99520 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2677 7 6 4.0645 -1.2251 -2.6239 8 7 4.1537 -1.3341 -0.1823 9 6 5.3748 -0.9910 0.2735 10 8 5.9873 -0.0831 -0.2539 11 6 5.9688 -1.7183 1.4142 12 6 7.2223 -1.4364 1.9535 13 7 7.5141 -2.2184 2.9513 14 16 6.3276 -3.2041 3.1793 15 7 5.3768 -2.7072 2.0473 16 7 2.0196 -0.6925 1.1995 17 6 2.0823 0.2227 2.3469 18 6 2.5872 -0.5217 3.5561 19 8 2.8677 -1.6987 3.4703 20 7 2.7280 0.1207 4.7326 21 6 3.1878 -0.5564 5.8325 22 1 3.4368 -1.6046 5.7562 23 6 3.3325 0.1056 7.0454 24 7 3.7728 -0.5435 8.0999 25 14 2.9013 1.9184 7.1774 26 1 1.4719 2.0610 7.5535 27 1 3.7521 2.5554 8.2145 28 1 3.1372 2.5797 5.8689 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7516 -1.7715 -1.2055 33 1 1.6054 -0.2618 -2.1369 34 1 3.7724 -2.2742 -2.6698 35 1 3.6264 -0.6887 -3.4657 36 1 5.1509 -1.1485 -2.6696 37 1 3.6647 -2.0584 0.2388 38 1 7.8757 -0.6590 1.5858 39 1 1.4495 -1.4979 1.4101 40 1 1.0869 0.6164 2.5525 41 1 2.7587 1.0463 2.1182 42 1 2.5041 1.0619 4.8010 43 1 3.8741 -0.0812 8.9465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133779196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:42 Heat of formation + Delta-G solvation = -32.211553 kcal Electronic energy + Delta-G solvation = -28739.554735 eV Core-core repulsion = 24753.149201 eV Total energy + Delta-G solvation = -3986.405534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.96183 -40.40746 -40.00474 -38.33773 -36.15173 -35.70911 -34.56028 -33.66946 -32.65550 -31.16501 -28.28669 -27.98484 -27.57513 -25.41052 -24.44798 -22.16915 -21.68627 -21.15148 -21.07993 -20.26710 -20.17419 -18.57008 -17.61340 -17.26189 -16.92666 -16.87030 -16.44013 -16.22127 -15.88919 -15.53413 -15.46549 -15.09058 -14.85516 -14.63865 -14.41402 -14.05887 -13.91224 -13.54064 -13.32529 -13.16443 -13.04482 -12.92036 -12.76787 -12.57014 -12.40916 -12.30581 -12.17743 -12.06037 -12.00477 -11.88917 -11.67157 -11.57075 -11.44697 -11.00007 -10.27000 -10.17150 -10.15514 -9.83587 -9.09883 -8.38266 -5.95539 -0.37444 0.56461 0.63921 0.76219 1.27222 1.30876 1.39045 2.05160 2.19886 2.21493 2.37566 2.80776 3.19635 3.49572 3.63937 3.76001 3.99965 4.12088 4.18586 4.26223 4.33770 4.42573 4.45241 4.53463 4.55382 4.59059 4.67974 4.84187 4.91402 5.00973 5.06664 5.10333 5.29779 5.34663 5.44653 5.50484 5.56614 5.74455 5.97215 6.13838 6.52784 6.64630 6.71287 6.94761 7.30141 7.46919 8.03325 8.78925 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009332 B = 0.005040 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.573373 B = 5554.206270 C = 7640.013785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 H 0.076 0.924 4 C -0.105 4.105 5 C 0.146 3.854 6 H 0.071 0.929 7 C -0.158 4.158 8 N -0.661 5.661 9 C 0.607 3.393 10 O -0.570 6.570 11 C -0.008 4.008 12 C 0.075 3.925 13 N -0.605 5.605 14 S 0.737 5.263 15 N -0.517 5.517 16 N -0.665 5.665 17 C 0.064 3.936 18 C 0.450 3.550 19 O -0.575 6.575 20 N -0.604 5.604 21 C -0.312 4.312 22 H 0.064 0.936 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.952 3.048 26 H -0.258 1.258 27 H -0.279 1.279 28 H -0.241 1.241 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.416 0.584 38 H 0.223 0.777 39 H 0.346 0.654 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.382 0.618 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 1.801 -20.742 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 H 0.094 0.906 4 C -0.143 4.143 5 C 0.042 3.958 6 H 0.090 0.910 7 C -0.216 4.216 8 N -0.310 5.310 9 C 0.387 3.613 10 O -0.451 6.451 11 C -0.182 4.182 12 C -0.118 4.118 13 N -0.446 5.446 14 S 0.779 5.221 15 N -0.367 5.367 16 N -0.298 5.298 17 C -0.069 4.069 18 C 0.237 3.763 19 O -0.457 6.457 20 N -0.247 5.247 21 C -0.441 4.441 22 H 0.083 0.917 23 C -0.212 4.212 24 N -0.576 5.576 25 Si 0.774 3.226 26 H -0.183 1.183 27 H -0.205 1.205 28 H -0.165 1.165 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.254 0.746 38 H 0.239 0.761 39 H 0.165 0.835 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.217 0.783 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.442 0.158 -19.729 20.028 hybrid contribution -0.791 2.032 0.455 2.227 sum -4.233 2.190 -19.275 19.855 Atomic orbital electron populations 1.22422 0.95846 1.02512 1.02618 1.21724 0.93377 0.97961 0.89733 0.90564 1.21910 0.92309 1.02292 0.97808 1.21067 0.93663 0.96327 0.84754 0.91046 1.22151 1.00842 1.01769 0.96846 1.45760 1.15602 1.36864 1.32786 1.16702 0.82388 0.81814 0.80373 1.90736 1.63094 1.31546 1.59685 1.22630 0.94834 0.98349 1.02390 1.23962 0.96221 1.00187 0.91448 1.72196 1.34938 1.15225 1.22218 1.79061 0.90869 1.28003 1.24171 1.72453 1.34598 1.16436 1.13222 1.60237 1.58118 1.08891 1.02504 1.21531 1.00661 0.95432 0.89241 1.20862 0.82586 0.88434 0.84445 1.90571 1.53379 1.17053 1.84681 1.42137 1.61696 1.11594 1.09249 1.18961 1.41379 0.96036 0.87742 0.91749 1.25910 0.97091 1.03870 0.94356 1.69785 1.47120 1.39045 1.01632 0.85534 0.79321 0.78123 0.79616 1.18271 1.20483 1.16516 0.93476 0.90295 0.92169 0.90495 0.87135 0.91865 0.89380 0.94215 0.74589 0.76073 0.83482 0.91509 0.89317 0.78345 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 9.16 71.98 0.66 -1.69 16 2 C 0.08 1.34 2.59 44.91 0.12 1.46 16 3 H 0.08 1.32 7.80 -2.39 -0.02 1.30 16 4 C -0.11 -1.40 4.54 30.60 0.14 -1.26 16 5 C 0.15 2.79 2.57 44.99 0.12 2.91 16 6 H 0.07 1.60 7.58 -2.39 -0.02 1.58 16 7 C -0.16 -2.57 9.48 71.98 0.68 -1.89 16 8 N -0.66 -17.02 3.80 -445.49 -1.69 -18.71 16 9 C 0.61 19.42 7.79 86.76 0.68 20.10 16 10 O -0.57 -19.97 16.47 -3.91 -0.06 -20.03 16 11 C -0.01 -0.26 6.81 41.98 0.29 0.02 16 12 C 0.08 2.49 11.22 85.22 0.96 3.44 16 13 N -0.60 -21.13 11.41 -92.46 -1.06 -22.19 16 14 S 0.74 25.01 23.69 -56.49 -1.34 23.67 16 15 N -0.52 -18.33 10.94 -80.59 -0.88 -19.21 16 16 N -0.66 -16.07 3.48 -495.56 -1.72 -17.79 16 17 C 0.06 1.85 5.97 85.56 0.51 2.36 16 18 C 0.45 18.79 7.82 87.66 0.69 19.48 16 19 O -0.58 -27.53 15.71 -3.07 -0.05 -27.58 16 20 N -0.60 -27.72 5.09 -306.98 -1.56 -29.28 16 21 C -0.31 -17.61 10.16 84.04 0.85 -16.75 16 22 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 23 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 24 N -0.93 -55.82 13.96 21.66 0.30 -55.52 16 25 Si 0.95 39.72 27.74 68.60 1.90 41.62 16 26 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 27 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 28 H -0.24 -8.82 6.52 99.48 0.65 -8.17 16 29 H 0.05 0.72 7.45 -2.39 -0.02 0.71 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.42 11.26 7.18 -92.70 -0.67 10.60 16 38 H 0.22 6.20 8.06 -2.91 -0.02 6.18 16 39 H 0.35 8.88 8.17 -89.70 -0.73 8.15 16 40 H 0.07 1.64 7.44 -2.39 -0.02 1.62 16 41 H 0.09 2.50 8.06 -2.39 -0.02 2.48 16 42 H 0.38 15.26 5.76 -92.71 -0.53 14.72 16 43 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -72.71 376.78 -0.93 -73.64 By element: Atomic # 1 Polarization: 44.41 SS G_CDS: -0.91 Total: 43.50 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 6.15 Total: 27.89 kcal Atomic # 7 Polarization: -156.09 SS G_CDS: -6.61 Total: -162.71 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.11 Total: -47.61 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.90 Total: 41.62 kcal Atomic # 16 Polarization: 25.01 SS G_CDS: -1.34 Total: 23.67 kcal Total: -72.71 -0.93 -73.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133779196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.428 kcal (2) G-P(sol) polarization free energy of solvation -72.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds