Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.46795 * 2 1 4 4 C 1.52995 * 109.47551 * 239.99812 * 2 1 3 5 5 C 1.53004 * 109.47616 * 174.54279 * 4 2 1 6 6 H 1.09003 * 109.46676 * 54.62361 * 5 4 2 7 7 C 1.52994 * 109.47004 * 294.62955 * 5 4 2 8 8 N 1.46894 * 109.47274 * 174.62252 * 5 4 2 9 9 C 1.46893 * 111.00245 * 203.26109 * 8 5 4 10 10 C 1.50707 * 109.47523 * 180.02562 * 9 8 5 11 11 O 1.21295 * 119.99460 * 359.72787 * 10 9 8 12 12 N 1.34775 * 120.00164 * 180.02562 * 10 9 8 13 13 C 1.37096 * 119.99928 * 180.02562 * 12 10 9 14 14 H 1.08003 * 119.99607 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99788 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00360 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99601 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47376 * 90.00545 * 17 15 13 19 19 H 1.48504 * 109.46853 * 210.00106 * 17 15 13 20 20 H 1.48503 * 109.47498 * 330.00017 * 17 15 13 21 21 N 1.46505 * 109.47299 * 119.99404 * 2 1 3 22 22 C 1.34769 * 120.00050 * 273.56064 * 21 2 1 23 23 O 1.21622 * 120.00434 * 0.02562 * 22 21 2 24 24 C 1.47183 * 119.99962 * 179.97438 * 22 21 2 25 25 C 1.38239 * 128.47321 * 179.70486 * 24 22 21 26 26 N 1.31243 * 111.88212 * 179.81216 * 25 24 22 27 27 N 1.27333 * 120.04234 * 0.53261 * 26 25 24 28 28 S 1.56636 * 109.73845 * 359.69309 * 27 26 25 29 29 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47310 * 299.99975 * 1 2 3 31 31 H 1.09001 * 109.47521 * 60.00239 * 1 2 3 32 32 H 1.09010 * 109.47196 * 54.54537 * 4 2 1 33 33 H 1.08995 * 109.47057 * 294.54880 * 4 2 1 34 34 H 1.09003 * 109.46919 * 299.99257 * 7 5 4 35 35 H 1.08992 * 109.47707 * 59.99763 * 7 5 4 36 36 H 1.09000 * 109.47028 * 179.97438 * 7 5 4 37 37 H 1.00900 * 111.00423 * 327.22106 * 8 5 4 38 38 H 1.09002 * 109.47171 * 60.00577 * 9 8 5 39 39 H 1.08997 * 109.47475 * 300.00216 * 9 8 5 40 40 H 0.97000 * 119.99705 * 359.97438 * 12 10 9 41 41 H 0.96998 * 120.00216 * 179.97438 * 16 15 13 42 42 H 0.97001 * 119.99348 * 93.56270 * 21 2 1 43 43 H 1.08000 * 124.06219 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5639 -0.6035 -1.3196 6 1 3.9999 -0.9710 -0.3907 7 6 3.9533 0.8622 -1.5210 8 7 4.0651 -1.4027 -2.4456 9 6 5.4720 -1.7735 -2.2430 10 6 5.9504 -2.5900 -3.4159 11 8 5.1922 -2.8428 -4.3283 12 7 7.2188 -3.0445 -3.4481 13 6 7.6540 -3.7868 -4.5153 14 1 6.9803 -4.0078 -5.3300 15 6 8.9619 -4.2549 -4.5487 16 7 9.7815 -3.9864 -3.5572 17 14 9.5547 -5.2670 -6.0026 18 1 10.1147 -4.3634 -7.0394 19 1 10.6061 -6.2136 -5.5508 20 1 8.4148 -6.0289 -6.5731 21 7 2.0183 -0.6905 1.1963 22 6 2.1746 -0.0113 2.3498 23 8 1.9098 1.1748 2.3978 24 6 2.6647 -0.7051 3.5517 25 6 2.8932 -0.1850 4.8119 26 7 3.3283 -1.0993 5.6469 27 7 3.4998 -2.2965 5.2487 28 16 3.1137 -2.4109 3.7350 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.5991 -0.2669 -2.1366 33 1 1.7586 -1.7732 -1.2016 34 1 3.5172 1.2297 -2.4500 35 1 3.5814 1.4552 -0.6855 36 1 5.0390 0.9461 -1.5708 37 1 3.4930 -2.2208 -2.5915 38 1 5.5651 -2.3604 -1.3292 39 1 6.0771 -0.8708 -2.1583 40 1 7.8239 -2.8456 -2.7165 41 1 10.6943 -4.3135 -3.5804 42 1 2.2292 -1.6365 1.1580 43 1 2.7305 0.8489 5.0782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133799407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = -3.558021 kcal Electronic energy + Delta-G solvation = -26606.979680 eV Core-core repulsion = 22621.816656 eV Total energy + Delta-G solvation = -3985.163024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30450 -40.24650 -38.51642 -37.49505 -35.39107 -33.92630 -32.93428 -31.85359 -31.24096 -30.27183 -27.93968 -27.19176 -26.29906 -24.27923 -23.74605 -21.69255 -21.14370 -20.34895 -19.77430 -19.28074 -18.00212 -17.80957 -16.80897 -16.43667 -16.29318 -15.54782 -15.50474 -15.12201 -15.05517 -14.70664 -14.48476 -14.13801 -13.92011 -13.66075 -13.25246 -13.16162 -12.90848 -12.62841 -12.47277 -12.30152 -12.20521 -11.97391 -11.75139 -11.55154 -11.28244 -11.07267 -10.99864 -10.81515 -10.78638 -10.57601 -10.55654 -10.41790 -10.33300 -10.24454 -9.61567 -9.53785 -8.49085 -8.12413 -7.99114 -6.44517 -3.85516 -0.75315 0.31887 0.99957 1.50414 2.46062 2.49956 3.15783 3.24683 3.30121 3.54391 3.86606 3.93627 4.14932 4.20347 4.25698 4.56125 4.63414 4.79849 5.00173 5.05499 5.09827 5.18925 5.22493 5.28055 5.32149 5.52441 5.60851 5.68181 5.74022 5.78727 5.87020 5.95187 5.98773 6.04430 6.22226 6.33958 6.82754 7.16257 7.18585 7.52446 7.53551 7.61756 8.03302 8.58009 9.14961 9.51147 10.02350 10.73170 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.002339 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.581014 B =11968.133379 C =13603.626168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.101 0.899 4 C -0.130 4.130 5 C 0.083 3.917 6 H 0.039 0.961 7 C -0.144 4.144 8 N -0.663 5.663 9 C 0.051 3.949 10 C 0.440 3.560 11 O -0.583 6.583 12 N -0.564 5.564 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 N -0.714 5.714 22 C 0.604 3.396 23 O -0.515 6.515 24 C -0.291 4.291 25 C 0.076 3.924 26 N -0.252 5.252 27 N -0.252 5.252 28 S 0.427 5.573 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.349 0.651 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.399 0.601 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.481 6.791 15.137 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.119 0.881 4 C -0.168 4.168 5 C -0.027 4.027 6 H 0.057 0.943 7 C -0.202 4.202 8 N -0.297 5.297 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.200 5.200 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.366 5.366 22 C 0.387 3.613 23 O -0.390 6.390 24 C -0.432 4.432 25 C -0.091 4.091 26 N -0.116 5.116 27 N -0.234 5.234 28 S 0.562 5.438 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.169 0.831 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.234 0.766 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.238 6.206 14.842 22.858 hybrid contribution 0.566 -0.125 0.282 0.645 sum -15.672 6.080 15.124 22.612 Atomic orbital electron populations 1.22187 0.94591 1.02494 1.02970 1.21204 0.94268 0.98146 0.82611 0.88065 1.22108 0.95849 1.01318 0.97547 1.21522 0.93404 0.95468 0.92335 0.94328 1.21870 1.01875 0.94726 1.01695 1.60102 1.02340 1.26621 1.40599 1.21711 0.90526 0.99363 0.96556 1.19803 0.83547 0.85122 0.88950 1.90522 1.55110 1.61870 1.39262 1.41871 1.09916 1.46937 1.21290 1.19699 0.96004 1.27564 0.99649 0.87917 1.25264 0.95850 0.98352 0.98458 1.69609 1.06783 1.46327 1.31577 0.85862 0.78481 0.79308 0.80660 1.20367 1.20929 1.19413 1.46039 1.67195 1.13319 1.10022 1.16447 0.77655 0.86020 0.81140 1.90864 1.50143 1.14083 1.83959 1.28099 1.14420 0.99954 1.00765 1.24498 0.95713 1.02075 0.86818 1.70719 1.15185 0.94687 1.30974 1.78918 1.19890 1.15504 1.09051 1.82725 1.43090 1.06375 1.11594 0.92218 0.92009 0.90922 0.88663 0.91047 0.91661 0.92714 0.92601 0.83136 0.94058 0.89684 0.77493 0.91848 0.76607 0.76721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.50 37.15 0.35 -0.70 16 2 C 0.14 1.03 2.47 -67.94 -0.17 0.86 16 3 H 0.10 0.88 5.73 -51.93 -0.30 0.58 16 4 C -0.13 -1.01 4.28 -26.73 -0.11 -1.13 16 5 C 0.08 0.87 2.63 -67.72 -0.18 0.69 16 6 H 0.04 0.39 7.31 -51.93 -0.38 0.01 16 7 C -0.14 -1.56 9.16 37.15 0.34 -1.22 16 8 N -0.66 -9.66 5.93 -108.00 -0.64 -10.30 16 9 C 0.05 0.85 5.97 -4.98 -0.03 0.82 16 10 C 0.44 10.09 7.82 -10.98 -0.09 10.00 16 11 O -0.58 -15.42 15.78 5.54 0.09 -15.33 16 12 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 13 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 14 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 17 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 21 N -0.71 -4.96 4.45 -54.97 -0.24 -5.21 16 22 C 0.60 5.30 7.78 -12.63 -0.10 5.20 16 23 O -0.51 -6.03 16.62 5.26 0.09 -5.94 16 24 C -0.29 -2.26 6.81 -35.95 -0.24 -2.51 16 25 C 0.08 0.61 11.55 -17.80 -0.21 0.41 16 26 N -0.25 -2.51 11.54 30.36 0.35 -2.16 16 27 N -0.25 -2.48 12.51 60.35 0.75 -1.72 16 28 S 0.43 2.89 23.05 -107.50 -2.48 0.41 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.07 0.49 8.02 -51.93 -0.42 0.08 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.53 6.47 -51.93 -0.34 0.19 16 36 H 0.05 0.67 7.35 -51.93 -0.38 0.28 16 37 H 0.35 5.13 8.00 -39.29 -0.31 4.82 16 38 H 0.04 0.61 8.06 -51.93 -0.42 0.20 16 39 H 0.08 1.36 7.32 -51.93 -0.38 0.98 16 40 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 41 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.40 2.07 8.04 -40.82 -0.33 1.74 16 43 H 0.22 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -33.50 380.66 -7.00 -40.50 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.62 Total: 11.31 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.67 Total: 4.54 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.89 Total: -57.00 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.17 Total: -21.27 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.48 Total: 0.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.50 -7.00 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133799407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.937 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds