Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.46795 * 2 1 4 4 C 1.52995 * 109.47551 * 239.99812 * 2 1 3 5 5 C 1.53004 * 109.47616 * 174.54279 * 4 2 1 6 6 H 1.09003 * 109.46676 * 54.62361 * 5 4 2 7 7 C 1.52994 * 109.47004 * 294.62955 * 5 4 2 8 8 N 1.46894 * 109.47274 * 174.62252 * 5 4 2 9 9 C 1.46893 * 111.00245 * 203.26109 * 8 5 4 10 10 C 1.50707 * 109.47523 * 180.02562 * 9 8 5 11 11 O 1.21295 * 119.99460 * 359.72787 * 10 9 8 12 12 N 1.34775 * 120.00164 * 180.02562 * 10 9 8 13 13 C 1.37096 * 119.99928 * 180.02562 * 12 10 9 14 14 H 1.08003 * 119.99607 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99788 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00360 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99601 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47376 * 90.00545 * 17 15 13 19 19 H 1.48504 * 109.46853 * 210.00106 * 17 15 13 20 20 H 1.48503 * 109.47498 * 330.00017 * 17 15 13 21 21 N 1.46505 * 109.47299 * 119.99404 * 2 1 3 22 22 C 1.34769 * 120.00050 * 273.56064 * 21 2 1 23 23 O 1.21622 * 120.00434 * 0.02562 * 22 21 2 24 24 C 1.47183 * 119.99962 * 179.97438 * 22 21 2 25 25 C 1.38239 * 128.47321 * 179.70486 * 24 22 21 26 26 N 1.31243 * 111.88212 * 179.81216 * 25 24 22 27 27 N 1.27333 * 120.04234 * 0.53261 * 26 25 24 28 28 S 1.56636 * 109.73845 * 359.69309 * 27 26 25 29 29 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47310 * 299.99975 * 1 2 3 31 31 H 1.09001 * 109.47521 * 60.00239 * 1 2 3 32 32 H 1.09010 * 109.47196 * 54.54537 * 4 2 1 33 33 H 1.08995 * 109.47057 * 294.54880 * 4 2 1 34 34 H 1.09003 * 109.46919 * 299.99257 * 7 5 4 35 35 H 1.08992 * 109.47707 * 59.99763 * 7 5 4 36 36 H 1.09000 * 109.47028 * 179.97438 * 7 5 4 37 37 H 1.00900 * 111.00423 * 327.22106 * 8 5 4 38 38 H 1.09002 * 109.47171 * 60.00577 * 9 8 5 39 39 H 1.08997 * 109.47475 * 300.00216 * 9 8 5 40 40 H 0.97000 * 119.99705 * 359.97438 * 12 10 9 41 41 H 0.96998 * 120.00216 * 179.97438 * 16 15 13 42 42 H 0.97001 * 119.99348 * 93.56270 * 21 2 1 43 43 H 1.08000 * 124.06219 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5639 -0.6035 -1.3196 6 1 3.9999 -0.9710 -0.3907 7 6 3.9533 0.8622 -1.5210 8 7 4.0651 -1.4027 -2.4456 9 6 5.4720 -1.7735 -2.2430 10 6 5.9504 -2.5900 -3.4159 11 8 5.1922 -2.8428 -4.3283 12 7 7.2188 -3.0445 -3.4481 13 6 7.6540 -3.7868 -4.5153 14 1 6.9803 -4.0078 -5.3300 15 6 8.9619 -4.2549 -4.5487 16 7 9.7815 -3.9864 -3.5572 17 14 9.5547 -5.2670 -6.0026 18 1 10.1147 -4.3634 -7.0394 19 1 10.6061 -6.2136 -5.5508 20 1 8.4148 -6.0289 -6.5731 21 7 2.0183 -0.6905 1.1963 22 6 2.1746 -0.0113 2.3498 23 8 1.9098 1.1748 2.3978 24 6 2.6647 -0.7051 3.5517 25 6 2.8932 -0.1850 4.8119 26 7 3.3283 -1.0993 5.6469 27 7 3.4998 -2.2965 5.2487 28 16 3.1137 -2.4109 3.7350 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.5991 -0.2669 -2.1366 33 1 1.7586 -1.7732 -1.2016 34 1 3.5172 1.2297 -2.4500 35 1 3.5814 1.4552 -0.6855 36 1 5.0390 0.9461 -1.5708 37 1 3.4930 -2.2208 -2.5915 38 1 5.5651 -2.3604 -1.3292 39 1 6.0771 -0.8708 -2.1583 40 1 7.8239 -2.8456 -2.7165 41 1 10.6943 -4.3135 -3.5804 42 1 2.2292 -1.6365 1.1580 43 1 2.7305 0.8489 5.0782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133799407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = -30.138624 kcal Electronic energy + Delta-G solvation = -26608.132301 eV Core-core repulsion = 22621.816656 eV Total energy + Delta-G solvation = -3986.315645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94931 -40.94074 -40.16391 -38.51997 -36.39546 -35.81081 -33.65471 -33.26466 -32.59257 -31.16291 -28.58308 -28.24661 -27.56113 -25.78430 -24.55545 -22.43360 -21.80128 -21.22102 -20.99590 -20.35972 -19.89586 -18.55497 -17.85640 -17.45895 -17.03239 -16.92714 -16.50783 -16.24727 -16.01114 -15.81216 -15.49863 -15.41326 -15.35871 -14.77174 -14.36071 -13.90518 -13.83104 -13.61468 -13.48442 -13.31648 -13.27654 -13.00598 -12.88883 -12.80679 -12.69153 -12.40918 -12.14121 -12.09674 -11.70576 -11.63965 -11.49618 -11.48621 -11.22230 -11.20395 -10.94685 -10.34095 -10.22568 -10.00625 -9.29010 -8.46005 -5.94560 -1.38111 -0.26266 0.39186 0.86219 1.38570 1.42645 1.54985 1.83142 1.85228 2.06681 2.29503 2.88853 2.94475 3.21699 3.48494 3.57295 3.64842 3.81751 3.94756 4.13914 4.32691 4.37914 4.42641 4.48343 4.52081 4.56122 4.61943 4.75822 4.88505 4.96289 4.96767 5.03883 5.21595 5.34483 5.36350 5.41851 5.48784 5.93128 6.15302 6.23844 6.50716 6.54457 6.60969 6.91371 7.13644 7.57645 8.12621 8.71341 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.002339 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.581014 B =11968.133379 C =13603.626168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.089 0.911 4 C -0.121 4.121 5 C 0.084 3.916 6 H 0.050 0.950 7 C -0.143 4.143 8 N -0.676 5.676 9 C 0.066 3.934 10 C 0.439 3.561 11 O -0.621 6.621 12 N -0.575 5.575 13 C -0.332 4.332 14 H 0.079 0.921 15 C -0.013 4.013 16 N -0.921 5.921 17 Si 0.991 3.009 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.271 1.271 21 N -0.704 5.704 22 C 0.608 3.392 23 O -0.547 6.547 24 C -0.300 4.300 25 C 0.075 3.925 26 N -0.277 5.277 27 N -0.290 5.290 28 S 0.496 5.504 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.042 0.958 37 H 0.348 0.652 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.410 0.590 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.955 6.333 15.312 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 H 0.107 0.893 4 C -0.159 4.159 5 C -0.025 4.025 6 H 0.068 0.932 7 C -0.200 4.200 8 N -0.310 5.310 9 C -0.067 4.067 10 C 0.226 3.774 11 O -0.508 6.508 12 N -0.212 5.212 13 C -0.462 4.462 14 H 0.097 0.903 15 C -0.213 4.213 16 N -0.562 5.562 17 Si 0.815 3.185 18 H -0.198 1.198 19 H -0.196 1.196 20 H -0.196 1.196 21 N -0.356 5.356 22 C 0.391 3.609 23 O -0.426 6.426 24 C -0.442 4.442 25 C -0.093 4.093 26 N -0.140 5.140 27 N -0.272 5.272 28 S 0.630 5.370 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.168 0.832 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.246 0.754 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -16.708 5.736 15.045 23.203 hybrid contribution 0.655 0.023 0.184 0.681 sum -16.053 5.759 15.229 22.864 Atomic orbital electron populations 1.22143 0.93630 1.03206 1.02820 1.21128 0.94914 0.97404 0.82290 0.89294 1.22025 0.93669 1.02407 0.97771 1.21599 0.95206 0.94389 0.91301 0.93219 1.21862 1.00987 0.95234 1.01954 1.60077 1.01179 1.26842 1.42914 1.21550 0.91930 0.98876 0.94327 1.20889 0.82427 0.84122 0.89922 1.90491 1.55921 1.63097 1.41277 1.41952 1.10867 1.47389 1.20983 1.19658 0.96527 1.29574 1.00396 0.90258 1.26021 0.95461 0.98892 1.00908 1.69669 1.07116 1.46710 1.32720 0.84951 0.77957 0.77967 0.77625 1.19806 1.19627 1.19607 1.45986 1.66416 1.13782 1.09460 1.16500 0.77195 0.85614 0.81560 1.90852 1.51717 1.15501 1.84489 1.28068 1.14754 1.00925 1.00422 1.24776 0.95125 1.02564 0.86791 1.70760 1.16268 0.94961 1.31999 1.78698 1.21331 1.15877 1.11252 1.82390 1.40728 1.04632 1.09230 0.91062 0.93148 0.90122 0.88575 0.89508 0.92312 0.91436 0.93885 0.83219 0.91416 0.88682 0.77065 0.91354 0.75367 0.75291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.50 71.98 0.68 -1.02 16 2 C 0.15 1.81 2.47 44.99 0.11 1.92 16 3 H 0.09 1.39 5.73 -2.39 -0.01 1.37 16 4 C -0.12 -1.57 4.28 30.59 0.13 -1.44 16 5 C 0.08 1.58 2.63 44.92 0.12 1.70 16 6 H 0.05 0.85 7.31 -2.39 -0.02 0.83 16 7 C -0.14 -2.86 9.16 71.98 0.66 -2.21 16 8 N -0.68 -18.52 5.93 -495.60 -2.94 -21.45 16 9 C 0.07 2.09 5.97 85.56 0.51 2.60 16 10 C 0.44 20.04 7.82 87.66 0.69 20.72 16 11 O -0.62 -33.16 15.78 -3.08 -0.05 -33.21 16 12 N -0.57 -28.75 5.29 -306.98 -1.62 -30.37 16 13 C -0.33 -18.52 9.68 84.04 0.81 -17.70 16 14 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 15 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 16 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 17 Si 0.99 42.30 29.55 68.60 2.03 44.33 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 N -0.70 -8.15 4.45 -446.06 -1.98 -10.13 16 22 C 0.61 9.68 7.78 86.59 0.67 10.35 16 23 O -0.55 -12.29 16.62 -4.10 -0.07 -12.36 16 24 C -0.30 -4.22 6.81 24.62 0.17 -4.05 16 25 C 0.08 1.15 11.55 84.78 0.98 2.13 16 26 N -0.28 -5.36 11.54 -57.87 -0.67 -6.03 16 27 N -0.29 -5.44 12.51 37.02 0.46 -4.98 16 28 S 0.50 5.75 23.05 -56.49 -1.30 4.45 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.09 0.91 8.02 -2.39 -0.02 0.89 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.19 6.47 -2.39 -0.02 1.17 16 36 H 0.04 0.96 7.35 -2.39 -0.02 0.95 16 37 H 0.35 9.63 8.00 -89.69 -0.72 8.91 16 38 H 0.07 1.82 8.06 -2.39 -0.02 1.80 16 39 H 0.10 2.87 7.32 -2.39 -0.02 2.86 16 40 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 41 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.41 3.01 8.04 -92.71 -0.75 2.26 16 43 H 0.23 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -72.71 380.66 -0.96 -73.67 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -1.11 Total: 32.14 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.00 Total: 12.77 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -6.47 Total: -121.80 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -0.12 Total: -45.57 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.30 Total: 4.45 kcal Total: -72.71 -0.96 -73.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133799407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.531 kcal (2) G-P(sol) polarization free energy of solvation -72.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds