Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.46795 * 2 1 4 4 C 1.52995 * 109.47551 * 239.99812 * 2 1 3 5 5 C 1.53004 * 109.47616 * 174.54279 * 4 2 1 6 6 H 1.09003 * 109.46676 * 54.62361 * 5 4 2 7 7 C 1.52994 * 109.47004 * 294.62955 * 5 4 2 8 8 N 1.46894 * 109.47274 * 174.62252 * 5 4 2 9 9 C 1.46893 * 111.00245 * 203.26109 * 8 5 4 10 10 C 1.50707 * 109.47523 * 180.02562 * 9 8 5 11 11 O 1.21295 * 119.99460 * 359.72787 * 10 9 8 12 12 N 1.34775 * 120.00164 * 180.02562 * 10 9 8 13 13 C 1.37096 * 119.99928 * 180.02562 * 12 10 9 14 14 H 1.08003 * 119.99607 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99788 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00360 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99601 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47472 * 60.00320 * 17 15 13 19 19 H 1.48503 * 109.46988 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47343 * 299.99842 * 17 15 13 21 21 N 1.46505 * 109.47299 * 119.99404 * 2 1 3 22 22 C 1.34769 * 120.00050 * 273.56064 * 21 2 1 23 23 O 1.21609 * 120.00220 * 0.02562 * 22 21 2 24 24 C 1.47447 * 120.00032 * 179.97438 * 22 21 2 25 25 C 1.37986 * 124.15783 * 179.72884 * 24 22 21 26 26 S 1.72102 * 104.03337 * 179.89869 * 25 24 22 27 27 N 1.56410 * 96.15629 * 0.32769 * 26 25 24 28 28 N 1.27417 * 109.87222 * 359.79581 * 27 26 25 29 29 H 1.09001 * 109.47521 * 60.00239 * 1 2 3 30 30 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47310 * 299.99975 * 1 2 3 32 32 H 1.09010 * 109.47196 * 54.54537 * 4 2 1 33 33 H 1.08995 * 109.47057 * 294.54880 * 4 2 1 34 34 H 1.09003 * 109.46919 * 299.99257 * 7 5 4 35 35 H 1.09002 * 109.47645 * 59.99775 * 7 5 4 36 36 H 1.09000 * 109.47028 * 179.97438 * 7 5 4 37 37 H 1.00900 * 111.00423 * 327.22106 * 8 5 4 38 38 H 1.09002 * 109.47171 * 60.00577 * 9 8 5 39 39 H 1.08997 * 109.47475 * 300.00216 * 9 8 5 40 40 H 0.97000 * 119.99705 * 359.97438 * 12 10 9 41 41 H 0.96998 * 120.00216 * 179.97438 * 16 15 13 42 42 H 0.97001 * 119.99348 * 93.56270 * 21 2 1 43 43 H 1.07994 * 127.98049 * 359.96646 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5639 -0.6035 -1.3196 6 1 3.9999 -0.9710 -0.3907 7 6 3.9533 0.8622 -1.5210 8 7 4.0651 -1.4027 -2.4456 9 6 5.4720 -1.7735 -2.2430 10 6 5.9504 -2.5900 -3.4159 11 8 5.1922 -2.8428 -4.3283 12 7 7.2188 -3.0445 -3.4481 13 6 7.6540 -3.7868 -4.5153 14 1 6.9803 -4.0078 -5.3300 15 6 8.9619 -4.2549 -4.5487 16 7 9.7815 -3.9864 -3.5572 17 14 9.5547 -5.2670 -6.0026 18 1 9.4281 -4.4671 -7.2472 19 1 10.9768 -5.6424 -5.7974 20 1 8.7305 -6.4968 -6.1185 21 7 2.0183 -0.6905 1.1963 22 6 2.1746 -0.0113 2.3498 23 8 1.9098 1.1746 2.3978 24 6 2.6656 -0.7064 3.5539 25 6 2.8620 -0.0952 4.7753 26 16 3.4293 -1.3639 5.7904 27 7 3.3928 -2.4822 4.6974 28 7 2.9785 -1.9967 3.5947 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.5991 -0.2669 -2.1366 33 1 1.7586 -1.7732 -1.2016 34 1 3.5172 1.2297 -2.4500 35 1 3.5814 1.4552 -0.6854 36 1 5.0390 0.9461 -1.5708 37 1 3.4930 -2.2208 -2.5915 38 1 5.5651 -2.3604 -1.3292 39 1 6.0771 -0.8708 -2.1583 40 1 7.8239 -2.8456 -2.7165 41 1 10.6943 -4.3135 -3.5804 42 1 2.2292 -1.6365 1.1580 43 1 2.6968 0.9400 5.0346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135100801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -6.122749 kcal Electronic energy + Delta-G solvation = -26670.525491 eV Core-core repulsion = 22685.251252 eV Total energy + Delta-G solvation = -3985.274239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51743 -39.87839 -38.42790 -37.40128 -35.28288 -33.86417 -32.81602 -31.78766 -31.18072 -30.15688 -27.53810 -27.09889 -26.22897 -24.59695 -23.90417 -21.68034 -21.19127 -20.21796 -19.79310 -19.18137 -17.86678 -17.18330 -16.65813 -16.44800 -16.26686 -15.86543 -15.41807 -15.03394 -14.91807 -14.49805 -14.40657 -14.04027 -13.85371 -13.56244 -13.18314 -13.04774 -12.79948 -12.60643 -12.44080 -12.25953 -12.11472 -11.89269 -11.67086 -11.49607 -11.19648 -11.00435 -10.89256 -10.83369 -10.68383 -10.54833 -10.52872 -10.42669 -10.38615 -10.19183 -9.47897 -9.43846 -8.41935 -8.03953 -7.93557 -6.39483 -3.80350 -0.39986 0.45321 1.01085 1.07665 2.71592 2.75536 3.21696 3.27070 3.31597 3.39112 3.93280 4.03360 4.21850 4.26066 4.45192 4.67235 4.73012 4.86025 4.92296 5.09734 5.16011 5.27077 5.29684 5.39759 5.43943 5.62560 5.72763 5.77633 5.83367 5.88113 5.96251 6.03807 6.10476 6.16065 6.29223 6.41555 6.90487 7.19267 7.27892 7.56961 7.71023 7.71850 8.08445 8.63684 9.19929 9.56756 10.08347 10.78283 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011851 B = 0.002267 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.009077 B =12347.029778 C =14124.582598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.099 0.901 4 C -0.129 4.129 5 C 0.082 3.918 6 H 0.041 0.959 7 C -0.143 4.143 8 N -0.663 5.663 9 C 0.051 3.949 10 C 0.442 3.558 11 O -0.583 6.583 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.931 3.069 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.274 1.274 21 N -0.702 5.702 22 C 0.607 3.393 23 O -0.526 6.526 24 C -0.024 4.024 25 C -0.237 4.237 26 S 0.464 5.536 27 N -0.286 5.286 28 N -0.210 5.210 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.349 0.651 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.410 0.590 43 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.503 9.415 21.096 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.117 0.883 4 C -0.167 4.167 5 C -0.028 4.028 6 H 0.059 0.941 7 C -0.201 4.201 8 N -0.297 5.297 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.468 6.468 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.120 0.880 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 N -0.353 5.353 22 C 0.388 3.612 23 O -0.401 6.401 24 C -0.172 4.172 25 C -0.395 4.395 26 S 0.600 5.400 27 N -0.266 5.266 28 N -0.080 5.080 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.168 0.832 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.246 0.754 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -15.261 8.903 20.834 27.317 hybrid contribution 0.412 -0.321 -0.343 0.625 sum -14.849 8.581 20.491 26.721 Atomic orbital electron populations 1.22180 0.94720 1.02478 1.02782 1.21196 0.94206 0.98060 0.82944 0.88275 1.22089 0.95820 1.01367 0.97441 1.21519 0.93473 0.95332 0.92451 0.94127 1.21863 1.01774 0.94829 1.01596 1.60122 1.02316 1.26600 1.40612 1.21706 0.90578 0.99317 0.96565 1.19817 0.83508 0.85052 0.88920 1.90517 1.55107 1.61874 1.39273 1.41862 1.09934 1.46990 1.21290 1.19654 0.95979 1.27605 0.99655 0.87981 1.25261 0.95847 0.98371 0.98473 1.69606 1.06806 1.46337 1.31649 0.85918 0.77418 0.79917 0.80962 1.19877 1.20992 1.19920 1.45993 1.65743 1.14122 1.09462 1.16617 0.77624 0.85677 0.81317 1.90844 1.51013 1.14114 1.84116 1.22715 1.07102 0.90187 0.97160 1.28907 1.04614 1.09196 0.96740 1.81623 1.44468 0.93035 1.20879 1.78688 1.21384 1.25785 1.00754 1.71543 1.10527 1.10321 1.15640 0.91026 0.92216 0.92120 0.88822 0.91041 0.91723 0.92771 0.92678 0.83152 0.93997 0.89738 0.77487 0.91838 0.75362 0.77408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.50 37.15 0.35 -0.93 16 2 C 0.14 1.26 2.47 -67.94 -0.17 1.09 16 3 H 0.10 1.00 5.73 -51.93 -0.30 0.70 16 4 C -0.13 -1.23 4.28 -26.73 -0.11 -1.34 16 5 C 0.08 1.00 2.63 -67.72 -0.18 0.83 16 6 H 0.04 0.51 7.31 -51.93 -0.38 0.13 16 7 C -0.14 -1.72 9.16 37.15 0.34 -1.38 16 8 N -0.66 -10.65 5.93 -108.00 -0.64 -11.29 16 9 C 0.05 0.93 5.97 -4.98 -0.03 0.90 16 10 C 0.44 10.62 7.82 -10.98 -0.09 10.54 16 11 O -0.58 -16.03 15.78 5.54 0.09 -15.94 16 12 N -0.56 -14.59 5.29 -10.96 -0.06 -14.64 16 13 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 14 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 17 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 N -0.70 -6.62 4.45 -54.88 -0.24 -6.86 16 22 C 0.61 6.49 7.79 -12.51 -0.10 6.39 16 23 O -0.53 -6.71 16.43 5.27 0.09 -6.63 16 24 C -0.02 -0.23 6.87 -83.78 -0.58 -0.81 16 25 C -0.24 -1.59 11.21 30.64 0.34 -1.24 16 26 S 0.46 2.57 23.38 -107.50 -2.51 0.06 16 27 N -0.29 -2.79 12.49 60.35 0.75 -2.04 16 28 N -0.21 -2.23 11.24 32.74 0.37 -1.87 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.07 0.64 8.02 -51.93 -0.42 0.23 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.58 6.47 -51.93 -0.34 0.25 16 36 H 0.05 0.72 7.35 -51.93 -0.38 0.33 16 37 H 0.35 5.70 8.00 -39.29 -0.31 5.38 16 38 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 39 H 0.08 1.46 7.32 -51.93 -0.38 1.08 16 40 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.41 3.67 8.20 -40.82 -0.33 3.33 16 43 H 0.21 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -34.19 380.37 -6.81 -41.00 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -5.63 Total: 14.46 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.45 Total: 5.92 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.90 Total: -60.89 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.17 Total: -22.57 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.51 Total: 0.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.19 -6.81 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135100801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.877 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds