Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.46795 * 2 1 4 4 C 1.52995 * 109.47551 * 239.99812 * 2 1 3 5 5 C 1.53004 * 109.47616 * 174.54279 * 4 2 1 6 6 H 1.09003 * 109.46676 * 54.62361 * 5 4 2 7 7 C 1.52994 * 109.47004 * 294.62955 * 5 4 2 8 8 N 1.46894 * 109.47274 * 174.62252 * 5 4 2 9 9 C 1.46893 * 111.00245 * 203.26109 * 8 5 4 10 10 C 1.50707 * 109.47523 * 180.02562 * 9 8 5 11 11 O 1.21295 * 119.99460 * 359.72787 * 10 9 8 12 12 N 1.34775 * 120.00164 * 180.02562 * 10 9 8 13 13 C 1.37096 * 119.99928 * 180.02562 * 12 10 9 14 14 H 1.08003 * 119.99607 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99788 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00360 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99601 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47472 * 60.00320 * 17 15 13 19 19 H 1.48503 * 109.46988 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47343 * 299.99842 * 17 15 13 21 21 N 1.46505 * 109.47299 * 119.99404 * 2 1 3 22 22 C 1.34769 * 120.00050 * 273.56064 * 21 2 1 23 23 O 1.21609 * 120.00220 * 0.02562 * 22 21 2 24 24 C 1.47447 * 120.00032 * 179.97438 * 22 21 2 25 25 C 1.37986 * 124.15783 * 179.72884 * 24 22 21 26 26 S 1.72102 * 104.03337 * 179.89869 * 25 24 22 27 27 N 1.56410 * 96.15629 * 0.32769 * 26 25 24 28 28 N 1.27417 * 109.87222 * 359.79581 * 27 26 25 29 29 H 1.09001 * 109.47521 * 60.00239 * 1 2 3 30 30 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47310 * 299.99975 * 1 2 3 32 32 H 1.09010 * 109.47196 * 54.54537 * 4 2 1 33 33 H 1.08995 * 109.47057 * 294.54880 * 4 2 1 34 34 H 1.09003 * 109.46919 * 299.99257 * 7 5 4 35 35 H 1.09002 * 109.47645 * 59.99775 * 7 5 4 36 36 H 1.09000 * 109.47028 * 179.97438 * 7 5 4 37 37 H 1.00900 * 111.00423 * 327.22106 * 8 5 4 38 38 H 1.09002 * 109.47171 * 60.00577 * 9 8 5 39 39 H 1.08997 * 109.47475 * 300.00216 * 9 8 5 40 40 H 0.97000 * 119.99705 * 359.97438 * 12 10 9 41 41 H 0.96998 * 120.00216 * 179.97438 * 16 15 13 42 42 H 0.97001 * 119.99348 * 93.56270 * 21 2 1 43 43 H 1.07994 * 127.98049 * 359.96646 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5639 -0.6035 -1.3196 6 1 3.9999 -0.9710 -0.3907 7 6 3.9533 0.8622 -1.5210 8 7 4.0651 -1.4027 -2.4456 9 6 5.4720 -1.7735 -2.2430 10 6 5.9504 -2.5900 -3.4159 11 8 5.1922 -2.8428 -4.3283 12 7 7.2188 -3.0445 -3.4481 13 6 7.6540 -3.7868 -4.5153 14 1 6.9803 -4.0078 -5.3300 15 6 8.9619 -4.2549 -4.5487 16 7 9.7815 -3.9864 -3.5572 17 14 9.5547 -5.2670 -6.0026 18 1 9.4281 -4.4671 -7.2472 19 1 10.9768 -5.6424 -5.7974 20 1 8.7305 -6.4968 -6.1185 21 7 2.0183 -0.6905 1.1963 22 6 2.1746 -0.0113 2.3498 23 8 1.9098 1.1746 2.3978 24 6 2.6656 -0.7064 3.5539 25 6 2.8620 -0.0952 4.7753 26 16 3.4293 -1.3639 5.7904 27 7 3.3928 -2.4822 4.6974 28 7 2.9785 -1.9967 3.5947 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.5991 -0.2669 -2.1366 33 1 1.7586 -1.7732 -1.2016 34 1 3.5172 1.2297 -2.4500 35 1 3.5814 1.4552 -0.6854 36 1 5.0390 0.9461 -1.5708 37 1 3.4930 -2.2208 -2.5915 38 1 5.5651 -2.3604 -1.3292 39 1 6.0771 -0.8708 -2.1583 40 1 7.8239 -2.8456 -2.7165 41 1 10.6943 -4.3135 -3.5804 42 1 2.2292 -1.6365 1.1580 43 1 2.6968 0.9400 5.0346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135100801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -33.665115 kcal Electronic energy + Delta-G solvation = -26671.719818 eV Core-core repulsion = 22685.251252 eV Total energy + Delta-G solvation = -3986.468565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.17689 -40.67737 -40.17143 -38.53275 -36.41086 -35.82999 -33.56155 -33.28632 -32.61705 -31.14849 -28.27908 -28.15007 -27.59059 -25.86135 -25.12847 -22.50144 -21.89743 -21.23729 -21.02869 -20.43306 -19.90745 -17.92527 -17.80887 -17.38819 -17.12030 -16.97260 -16.56267 -16.44701 -16.10008 -15.79234 -15.51938 -15.40421 -15.24786 -14.77372 -14.38556 -13.93843 -13.67645 -13.62315 -13.49817 -13.33652 -13.30485 -13.03522 -12.90173 -12.84200 -12.72248 -12.44276 -12.17084 -12.12007 -11.73337 -11.66914 -11.50887 -11.49294 -11.25436 -11.18117 -10.92453 -10.36496 -10.19283 -10.03095 -9.34656 -8.47364 -5.96543 -0.94977 -0.05246 0.30384 0.52365 1.39427 1.41069 1.52353 1.99589 2.02256 2.03574 2.28378 2.73739 2.85643 3.19600 3.46107 3.62821 3.75993 3.84165 3.92883 4.11857 4.28972 4.33789 4.35892 4.39645 4.44664 4.49447 4.56856 4.75332 4.85200 4.92845 4.93630 5.01132 5.17533 5.30514 5.35494 5.39743 5.46715 5.90100 6.11263 6.20280 6.44182 6.52030 6.58572 6.95933 7.11084 7.54453 8.09404 8.69965 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011851 B = 0.002267 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.009077 B =12347.029778 C =14124.582598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.091 0.909 4 C -0.119 4.119 5 C 0.085 3.915 6 H 0.042 0.958 7 C -0.140 4.140 8 N -0.674 5.674 9 C 0.066 3.934 10 C 0.439 3.561 11 O -0.621 6.621 12 N -0.574 5.574 13 C -0.335 4.335 14 H 0.080 0.920 15 C -0.014 4.014 16 N -0.922 5.922 17 Si 0.994 3.006 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.271 1.271 21 N -0.698 5.698 22 C 0.606 3.394 23 O -0.552 6.552 24 C -0.048 4.048 25 C -0.236 4.236 26 S 0.557 5.443 27 N -0.334 5.334 28 N -0.235 5.235 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.346 0.654 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.395 0.605 41 H 0.278 0.722 42 H 0.413 0.587 43 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.643 9.736 22.420 29.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.158 4.158 5 C -0.025 4.025 6 H 0.060 0.940 7 C -0.198 4.198 8 N -0.307 5.307 9 C -0.067 4.067 10 C 0.226 3.774 11 O -0.507 6.507 12 N -0.211 5.211 13 C -0.464 4.464 14 H 0.098 0.902 15 C -0.213 4.213 16 N -0.562 5.562 17 Si 0.817 3.183 18 H -0.196 1.196 19 H -0.195 1.195 20 H -0.196 1.196 21 N -0.349 5.349 22 C 0.388 3.612 23 O -0.430 6.430 24 C -0.196 4.196 25 C -0.393 4.393 26 S 0.692 5.308 27 N -0.315 5.315 28 N -0.104 5.104 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.166 0.834 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.229 0.771 41 H 0.087 0.913 42 H 0.249 0.751 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -15.400 9.218 22.174 28.528 hybrid contribution 0.443 -0.360 -0.607 0.834 sum -14.957 8.858 21.567 27.700 Atomic orbital electron populations 1.22129 0.93618 1.02935 1.02921 1.21151 0.94970 0.97350 0.82461 0.89145 1.22006 0.93728 1.02076 0.97944 1.21582 0.95196 0.94628 0.91050 0.93991 1.21841 1.01011 0.94848 1.02059 1.60131 1.01165 1.26688 1.42707 1.21538 0.91998 0.98894 0.94229 1.20822 0.82498 0.84213 0.89829 1.90483 1.55896 1.63125 1.41213 1.41943 1.10785 1.47340 1.21015 1.19649 0.96618 1.29756 1.00395 0.90202 1.26069 0.95377 0.98838 1.01050 1.69671 1.07166 1.46578 1.32833 0.84977 0.77416 0.78272 0.77606 1.19650 1.19473 1.19587 1.46016 1.65265 1.14200 1.09387 1.16777 0.77185 0.85420 0.81818 1.90820 1.52427 1.15100 1.84638 1.22669 1.08715 0.90486 0.97745 1.29297 1.03123 1.10633 0.96202 1.81249 1.41423 0.90407 1.17721 1.78356 1.22995 1.28365 1.01799 1.71566 1.11441 1.10862 1.16558 0.89796 0.91596 0.93049 0.88296 0.90248 0.91984 0.91421 0.93813 0.83428 0.92121 0.88515 0.77100 0.91276 0.75061 0.75300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.50 71.98 0.68 -1.60 16 2 C 0.14 2.44 2.47 44.99 0.11 2.55 16 3 H 0.09 1.73 5.73 -2.39 -0.01 1.71 16 4 C -0.12 -2.11 4.28 30.59 0.13 -1.98 16 5 C 0.08 1.97 2.63 44.92 0.12 2.09 16 6 H 0.04 0.99 7.31 -2.39 -0.02 0.98 16 7 C -0.14 -3.22 9.16 71.98 0.66 -2.56 16 8 N -0.67 -21.16 5.93 -495.60 -2.94 -24.10 16 9 C 0.07 2.36 5.97 85.56 0.51 2.87 16 10 C 0.44 21.37 7.82 87.66 0.69 22.06 16 11 O -0.62 -34.80 15.78 -3.08 -0.05 -34.85 16 12 N -0.57 -30.17 5.29 -306.98 -1.62 -31.79 16 13 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 14 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 15 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 16 N -0.92 -50.57 13.05 21.66 0.28 -50.28 16 17 Si 0.99 43.43 29.55 68.60 2.03 45.45 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 N -0.70 -12.70 4.45 -445.80 -1.98 -14.68 16 22 C 0.61 12.65 7.79 86.67 0.68 13.33 16 23 O -0.55 -13.82 16.43 -4.06 -0.07 -13.88 16 24 C -0.05 -0.89 6.87 41.36 0.28 -0.60 16 25 C -0.24 -2.73 11.21 67.76 0.76 -1.97 16 26 S 0.56 5.00 23.38 -56.49 -1.32 3.68 16 27 N -0.33 -6.25 12.49 37.02 0.46 -5.79 16 28 N -0.24 -4.91 11.24 -50.34 -0.57 -5.47 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.08 1.31 8.02 -2.39 -0.02 1.29 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.38 6.47 -2.39 -0.02 1.36 16 36 H 0.04 1.09 7.35 -2.39 -0.02 1.08 16 37 H 0.35 11.15 8.00 -89.69 -0.72 10.43 16 38 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 39 H 0.10 3.25 7.32 -2.39 -0.02 3.23 16 40 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 41 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 42 H 0.41 7.17 8.20 -92.71 -0.76 6.41 16 43 H 0.23 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -74.49 380.37 -0.99 -75.48 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -1.12 Total: 40.84 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 5.90 Total: 15.39 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -6.36 Total: -132.11 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -0.12 Total: -48.73 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.32 Total: 3.68 kcal Total: -74.49 -0.99 -75.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135100801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.814 kcal (2) G-P(sol) polarization free energy of solvation -74.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds