Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35525 * 116.99807 * 2 1 4 4 N 1.32406 * 119.52993 * 359.72896 * 3 2 1 5 5 C 1.31658 * 121.80975 * 179.74774 * 4 3 2 6 6 C 1.39548 * 120.64960 * 0.52553 * 5 4 3 7 7 C 1.47616 * 120.49283 * 179.72092 * 6 5 4 8 8 O 1.21585 * 119.99563 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00136 * 0.02562 * 7 6 5 10 10 C 1.46493 * 119.99858 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47536 * 35.00077 * 10 9 7 12 12 C 1.52996 * 109.47188 * 274.99803 * 10 9 7 13 13 C 1.53001 * 109.46848 * 155.00089 * 10 9 7 14 14 C 1.52998 * 109.47426 * 295.00106 * 13 10 9 15 15 H 1.09002 * 109.47087 * 305.00106 * 14 13 10 16 16 C 1.53001 * 109.47499 * 185.00133 * 14 13 10 17 17 N 1.46500 * 109.47301 * 64.99688 * 14 13 10 18 18 C 1.36934 * 120.00454 * 205.00451 * 17 14 13 19 19 H 1.08001 * 119.99666 * 359.97438 * 18 17 14 20 20 C 1.38803 * 120.00045 * 180.02562 * 18 17 14 21 21 N 1.31615 * 120.00365 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99805 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47187 * 89.99832 * 22 20 18 24 24 H 1.48497 * 109.47094 * 209.99547 * 22 20 18 25 25 H 1.48498 * 109.47234 * 329.99816 * 22 20 18 26 26 C 1.40257 * 119.01011 * 359.74374 * 6 5 4 27 27 C 1.38076 * 118.34776 * 0.02562 * 26 6 5 28 28 Cl 1.73596 * 120.37993 * 180.02562 * 27 26 6 29 29 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47352 * 299.99669 * 1 2 3 31 31 H 1.08999 * 109.47144 * 59.99694 * 1 2 3 32 32 H 1.07996 * 119.67053 * 180.26670 * 5 4 3 33 33 H 0.97002 * 119.99905 * 0.02562 * 9 7 6 34 34 H 1.08995 * 109.47366 * 300.00100 * 12 10 9 35 35 H 1.09002 * 109.47241 * 60.00492 * 12 10 9 36 36 H 1.09004 * 109.47410 * 180.02562 * 12 10 9 37 37 H 1.09003 * 109.47093 * 55.00093 * 13 10 9 38 38 H 1.09003 * 109.47296 * 175.00027 * 13 10 9 39 39 H 1.09000 * 109.47144 * 59.99781 * 16 14 13 40 40 H 1.08994 * 109.47106 * 179.97438 * 16 14 13 41 41 H 1.09002 * 109.46929 * 300.00069 * 16 14 13 42 42 H 0.96999 * 119.99787 * 25.00224 * 17 14 13 43 43 H 0.97005 * 120.00416 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.82258 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 7 1.3140 2.3120 -0.0054 5 6 1.8645 3.5080 -0.0008 6 6 3.2525 3.6522 -0.0008 7 6 3.8661 4.9948 -0.0017 8 8 5.0764 5.1100 -0.0022 9 7 3.0846 6.0929 -0.0021 10 6 3.6935 7.4253 -0.0024 11 1 4.6102 7.4057 -0.5918 12 6 4.0198 7.8373 1.4344 13 6 2.7165 8.4323 -0.6123 14 6 2.4868 8.0919 -2.0862 15 1 3.4456 8.0489 -2.6028 16 6 1.6095 9.1687 -2.7278 17 7 1.8183 6.7923 -2.1888 18 6 1.9541 6.0402 -3.3250 19 1 2.5538 6.4052 -4.1457 20 6 1.3203 4.8092 -3.4223 21 7 0.5891 4.3645 -2.4223 22 14 1.5051 3.7835 -4.9726 23 1 2.6817 2.8879 -4.8362 24 1 0.2817 2.9663 -5.1741 25 1 1.6987 4.6810 -6.1397 26 6 4.0558 2.5025 -0.0004 27 6 3.4352 1.2691 -0.0005 28 17 4.3784 -0.1883 0.0006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.2356 4.3860 -0.0011 33 1 2.1189 6.0009 -0.0013 34 1 3.1032 7.8569 2.0238 35 1 4.7159 7.1199 1.8690 36 1 4.4725 8.8289 1.4342 37 1 1.7679 8.3881 -0.0772 38 1 3.1325 9.4367 -0.5320 39 1 2.1070 10.1356 -2.6515 40 1 1.4464 8.9264 -3.7778 41 1 0.6507 9.2117 -2.2111 42 1 1.2794 6.4646 -1.4518 43 1 0.1458 3.5044 -2.4905 44 1 5.1331 2.5801 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146521554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = -29.576338 kcal Electronic energy + Delta-G solvation = -28975.896817 eV Core-core repulsion = 24955.269097 eV Total energy + Delta-G solvation = -4020.627720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.49851 -39.25219 -37.57001 -36.72168 -36.29628 -34.26261 -32.47694 -32.01216 -31.18609 -29.80083 -28.57052 -27.13870 -26.37955 -23.94687 -23.74587 -23.11343 -21.23723 -20.35755 -19.78913 -18.26428 -17.37823 -17.23842 -17.00989 -15.89907 -15.71306 -14.97403 -14.89207 -14.47042 -14.15771 -14.06145 -13.82266 -13.65002 -13.36126 -13.11803 -12.92226 -12.73515 -12.54229 -12.18842 -11.96541 -11.79667 -11.74164 -11.71416 -11.69463 -11.10572 -10.92006 -10.89849 -10.87030 -10.78570 -10.42574 -10.30555 -9.98574 -9.82078 -9.70541 -9.40031 -9.11645 -9.04127 -8.47302 -8.09175 -7.02236 -5.90639 -3.12945 1.08750 1.41526 2.30733 3.16945 3.34291 3.38280 3.44010 3.47029 3.71692 4.23619 4.52212 4.64769 4.99040 5.07833 5.23651 5.29099 5.37435 5.42600 5.46410 5.48642 5.50451 5.59066 5.63447 5.78772 5.82557 5.90012 5.93601 5.97873 6.08991 6.18933 6.30575 6.33560 6.41078 6.49510 6.53844 6.60310 6.79793 6.99131 7.08727 7.31492 7.62220 8.06621 8.11533 8.29836 8.79353 9.41473 9.92691 10.28515 11.31727 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.004967 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.092219 B = 5636.032177 C = 7091.015384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.300 6.300 3 C 0.348 3.652 4 N -0.518 5.518 5 C 0.242 3.758 6 C -0.219 4.219 7 C 0.583 3.417 8 O -0.560 6.560 9 N -0.693 5.693 10 C 0.151 3.849 11 H 0.085 0.915 12 C -0.163 4.163 13 C -0.134 4.134 14 C 0.168 3.832 15 H 0.049 0.951 16 C -0.163 4.163 17 N -0.715 5.715 18 C -0.219 4.219 19 H 0.068 0.932 20 C -0.010 4.010 21 N -0.924 5.924 22 Si 0.897 3.103 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.284 1.284 26 C 0.021 3.979 27 C -0.135 4.135 28 Cl -0.058 7.058 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.177 0.823 33 H 0.402 0.598 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.376 0.624 43 H 0.259 0.741 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -0.040 8.983 9.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.206 6.206 3 C 0.168 3.832 4 N -0.241 5.241 5 C 0.084 3.916 6 C -0.225 4.225 7 C 0.370 3.630 8 O -0.440 6.440 9 N -0.345 5.345 10 C 0.046 3.954 11 H 0.103 0.897 12 C -0.221 4.221 13 C -0.173 4.173 14 C 0.059 3.941 15 H 0.067 0.933 16 C -0.223 4.223 17 N -0.358 5.358 18 C -0.350 4.350 19 H 0.086 0.914 20 C -0.206 4.206 21 N -0.573 5.573 22 Si 0.729 3.271 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.210 1.210 26 C -0.005 4.005 27 C -0.165 4.165 28 Cl -0.030 7.030 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.193 0.807 33 H 0.240 0.760 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.211 0.789 43 H 0.069 0.931 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.247 -0.473 8.772 8.873 hybrid contribution 0.015 -0.748 -1.041 1.282 sum 1.262 -1.221 7.732 7.929 Atomic orbital electron populations 1.22900 0.76933 1.02643 1.03115 1.86230 1.23140 1.24209 1.86992 1.19749 0.87506 0.85902 0.90071 1.67538 1.38475 0.98140 1.19967 1.22781 0.91131 0.93966 0.83762 1.20712 0.94923 0.94238 1.12605 1.17577 0.86210 0.83726 0.75440 1.90700 1.14035 1.87206 1.52083 1.45849 1.10215 1.04843 1.73599 1.20829 0.97251 0.81730 0.95613 0.89701 1.22212 1.01563 1.01284 0.97061 1.22221 0.99089 0.98171 0.97791 1.20308 0.95111 0.86682 0.92039 0.93284 1.22408 1.00248 0.97925 1.01738 1.42466 1.58422 1.16566 1.18333 1.19225 1.23784 0.98069 0.93910 0.91427 1.24504 1.00605 0.97721 0.97757 1.69414 1.36179 1.21195 1.30482 0.86331 0.77003 0.80497 0.83310 1.21934 1.21897 1.20994 1.21304 1.01278 0.88453 0.89479 1.20528 0.89169 0.89221 1.17622 1.98333 1.71841 1.35386 1.97435 0.88894 0.92102 0.91625 0.80660 0.75958 0.92753 0.92307 0.92054 0.91672 0.90655 0.94538 0.92874 0.93570 0.78942 0.93118 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.37 101.05 1.05 1.56 16 2 O -0.30 -4.87 9.93 -18.27 -0.18 -5.06 16 3 C 0.35 6.26 7.49 -16.93 -0.13 6.13 16 4 N -0.52 -9.60 9.18 -12.94 -0.12 -9.71 16 5 C 0.24 4.49 9.03 -17.14 -0.15 4.33 16 6 C -0.22 -4.10 5.89 -104.82 -0.62 -4.72 16 7 C 0.58 11.17 7.74 -12.43 -0.10 11.08 16 8 O -0.56 -11.92 16.08 5.29 0.09 -11.83 16 9 N -0.69 -11.62 3.75 -54.83 -0.21 -11.83 16 10 C 0.15 2.25 2.57 -67.94 -0.17 2.07 16 11 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 12 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 13 C -0.13 -1.84 4.43 -26.73 -0.12 -1.96 16 14 C 0.17 2.90 2.89 -67.93 -0.20 2.71 16 15 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 16 C -0.16 -2.62 9.49 37.16 0.35 -2.27 16 17 N -0.72 -14.91 3.84 -53.43 -0.21 -15.12 16 18 C -0.22 -5.39 9.93 -15.06 -0.15 -5.54 16 19 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 20 C -0.01 -0.26 5.50 -17.44 -0.10 -0.36 16 21 N -0.92 -22.97 10.74 55.49 0.60 -22.37 16 22 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.02 0.38 9.50 -38.88 -0.37 0.01 16 27 C -0.14 -2.37 6.35 -39.27 -0.25 -2.62 16 28 Cl -0.06 -0.91 28.52 -51.86 -1.48 -2.38 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.18 3.23 5.84 -52.49 -0.31 2.93 16 33 H 0.40 6.65 4.56 -40.82 -0.19 6.47 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.38 7.88 5.71 -40.82 -0.23 7.65 16 43 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 44 H 0.15 2.60 7.73 -52.49 -0.41 2.19 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -27.49 378.70 -7.56 -35.04 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.14 Total: 12.09 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.60 Total: 8.75 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.07 Total: -59.03 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.10 Total: -16.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.48 Total: -2.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.49 -7.56 -35.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146521554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.468 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds