Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47173 * 2 1 4 4 C 1.46906 * 110.99888 * 290.68879 * 3 2 1 5 5 C 1.50700 * 109.47093 * 85.85391 * 4 3 2 6 6 O 1.21285 * 120.00173 * 7.56858 * 5 4 3 7 7 N 1.34783 * 119.99495 * 187.56026 * 5 4 3 8 8 C 1.37089 * 119.99311 * 179.97438 * 7 5 4 9 9 H 1.08003 * 120.00752 * 0.02562 * 8 7 5 10 10 C 1.38954 * 119.99715 * 179.97438 * 8 7 5 11 11 N 1.31412 * 119.99890 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99983 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47412 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46822 * 120.00535 * 12 10 8 15 15 H 1.48500 * 109.47398 * 240.00243 * 12 10 8 16 16 C 1.46896 * 110.99727 * 166.73318 * 3 2 1 17 17 H 1.09004 * 109.47060 * 171.18913 * 16 3 2 18 18 C 1.52998 * 109.47142 * 51.19585 * 16 3 2 19 19 C 1.52998 * 109.47212 * 291.18948 * 16 3 2 20 20 N 1.46498 * 109.47208 * 304.99574 * 19 16 3 21 21 C 1.34775 * 119.99779 * 179.97438 * 20 19 16 22 22 O 1.21566 * 120.00473 * 359.97438 * 21 20 19 23 23 C 1.47755 * 119.99653 * 180.02562 * 21 20 19 24 24 C 1.39360 * 124.11209 * 179.72710 * 23 21 20 25 25 N 1.30093 * 112.13930 * 179.84749 * 24 23 21 26 26 S 1.55923 * 108.75635 * 0.39990 * 25 24 23 27 27 N 1.31489 * 124.11884 * 0.02562 * 23 21 20 28 28 H 1.08997 * 109.46858 * 308.48788 * 1 2 3 29 29 H 1.09000 * 109.46902 * 68.48350 * 1 2 3 30 30 H 1.09003 * 109.47340 * 188.48289 * 1 2 3 31 31 H 1.08999 * 109.46601 * 120.00123 * 2 1 3 32 32 H 1.09001 * 109.46877 * 240.00136 * 2 1 3 33 33 H 1.08997 * 109.46482 * 205.85951 * 4 3 2 34 34 H 1.09003 * 109.46760 * 325.85191 * 4 3 2 35 35 H 0.96994 * 120.00148 * 0.02562 * 7 5 4 36 36 H 0.97003 * 120.00178 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.46788 * 299.99116 * 18 16 3 38 38 H 1.08996 * 109.47824 * 59.99844 * 18 16 3 39 39 H 1.09005 * 109.47136 * 179.97438 * 18 16 3 40 40 H 1.09003 * 109.46820 * 64.99727 * 19 16 3 41 41 H 1.08998 * 109.47147 * 184.99273 * 19 16 3 42 42 H 0.97001 * 120.00197 * 0.02562 * 20 19 16 43 43 H 1.07993 * 123.93032 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7384 2.0428 -1.2830 5 6 0.3481 2.6236 -1.2556 6 8 -0.2889 2.6234 -0.2235 7 7 -0.1873 3.1434 -2.3780 8 6 -1.4523 3.6712 -2.3530 9 1 -2.0197 3.6710 -1.4340 10 6 -2.0042 4.2076 -3.5100 11 7 -1.3137 4.2084 -4.6281 12 14 -3.7280 4.9262 -3.4763 13 1 -4.2886 4.8041 -2.1066 14 1 -3.6746 6.3590 -3.8630 15 1 -4.5912 4.1873 -4.4325 16 6 3.4537 1.4363 0.3147 17 1 3.8245 2.4489 0.1558 18 6 4.2106 0.4674 -0.5958 19 6 3.6697 1.0375 1.7759 20 7 2.8510 1.8903 2.6411 21 6 2.8795 1.7193 3.9776 22 8 3.5842 0.8570 4.4653 23 6 2.0533 2.5791 4.8502 24 6 2.0128 2.4736 6.2392 25 7 1.2109 3.3473 6.7740 26 16 0.5702 4.2013 5.6377 27 7 1.2626 3.5331 4.4103 28 1 -0.3633 0.6396 0.8044 29 1 -0.3633 0.3769 -0.9561 30 1 -0.3634 -1.0164 0.1516 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.4624 2.8406 -1.4486 34 1 1.8115 1.3129 -2.0893 35 1 0.3220 3.1433 -3.2034 36 1 -1.6990 4.5825 -5.4359 37 1 3.8399 -0.5453 -0.4369 38 1 4.0568 0.7515 -1.6368 39 1 5.2748 0.5058 -0.3626 40 1 3.3811 -0.0045 1.9146 41 1 4.7214 1.1606 2.0345 42 1 2.2879 2.5776 2.2520 43 1 2.5830 1.7525 6.8059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152153770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = -25.324946 kcal Electronic energy + Delta-G solvation = -27830.507681 eV Core-core repulsion = 23844.400772 eV Total energy + Delta-G solvation = -3986.106909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.13077 -40.75631 -39.98171 -38.74927 -35.94398 -35.52037 -34.56285 -33.17615 -32.78412 -31.13486 -28.89964 -27.99834 -27.09298 -25.94788 -24.03718 -23.55614 -21.40053 -21.15573 -20.43647 -20.34764 -19.74339 -18.74604 -17.69958 -17.32395 -17.09260 -16.91368 -16.66127 -16.41854 -16.19706 -15.83745 -15.52232 -15.35805 -14.99282 -14.55610 -14.17565 -13.77252 -13.66124 -13.52445 -13.46342 -13.25653 -13.15745 -12.98386 -12.82490 -12.50374 -12.44995 -12.33807 -12.25531 -12.11448 -12.06042 -12.03273 -11.82349 -11.62324 -11.31130 -11.21272 -10.30794 -10.13407 -9.98102 -9.87369 -9.13223 -8.39751 -5.86143 -0.61200 0.39212 0.49224 0.63428 1.38135 1.42737 1.55981 2.02272 2.12076 2.20672 2.31636 2.74771 3.28224 3.44595 3.56199 3.73582 3.78734 4.04850 4.10219 4.14315 4.30300 4.36529 4.48599 4.49588 4.54492 4.64026 4.66145 4.68670 4.74937 4.84767 4.95338 5.05742 5.18034 5.28907 5.33480 5.44266 5.47422 5.57457 5.96092 6.17704 6.25097 6.46161 6.71692 7.03946 7.24007 7.70134 8.27849 8.78232 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.003312 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.132235 B = 8452.369399 C =10614.389801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 N -0.524 5.524 4 C 0.059 3.941 5 C 0.448 3.552 6 O -0.597 6.597 7 N -0.585 5.585 8 C -0.319 4.319 9 H 0.077 0.923 10 C -0.016 4.016 11 N -0.925 5.925 12 Si 0.986 3.014 13 H -0.274 1.274 14 H -0.273 1.273 15 H -0.275 1.275 16 C 0.070 3.930 17 H 0.096 0.904 18 C -0.177 4.177 19 C 0.131 3.869 20 N -0.689 5.689 21 C 0.601 3.399 22 O -0.557 6.557 23 C -0.005 4.005 24 C 0.089 3.911 25 N -0.595 5.595 26 S 0.773 5.227 27 N -0.566 5.566 28 H 0.045 0.955 29 H 0.024 0.976 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.274 0.726 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.417 0.583 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.760 -4.446 13.257 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.064 4.064 3 N -0.249 5.249 4 C -0.073 4.073 5 C 0.235 3.765 6 O -0.481 6.481 7 N -0.224 5.224 8 C -0.449 4.449 9 H 0.095 0.905 10 C -0.215 4.215 11 N -0.567 5.567 12 Si 0.810 3.190 13 H -0.199 1.199 14 H -0.199 1.199 15 H -0.200 1.200 16 C -0.039 4.039 17 H 0.114 0.886 18 C -0.236 4.236 19 C 0.008 3.992 20 N -0.339 5.339 21 C 0.382 3.618 22 O -0.436 6.436 23 C -0.179 4.179 24 C -0.103 4.103 25 N -0.436 5.436 26 S 0.814 5.186 27 N -0.417 5.417 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.225 0.775 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.254 0.746 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 10.158 -3.162 14.587 18.054 hybrid contribution 0.389 -0.973 -1.615 1.925 sum 10.546 -4.135 12.972 17.222 Atomic orbital electron populations 1.21721 0.96386 0.99894 1.01018 1.22089 0.94753 0.88329 1.01203 1.61587 1.15165 1.17121 1.31009 1.21758 0.94278 0.99600 0.91634 1.20789 0.89710 0.82395 0.83568 1.90503 1.64168 1.61157 1.32291 1.41955 1.15255 1.54383 1.10766 1.19613 0.92569 1.35959 0.96772 0.90498 1.25918 1.03185 0.98040 0.94373 1.69678 1.39285 1.47052 1.00722 0.84968 0.77839 0.78062 0.78083 1.19880 1.19865 1.20016 1.22122 0.86593 1.01449 0.93696 0.88568 1.22368 1.01876 0.99700 0.99648 1.21608 0.95366 0.94373 0.87882 1.45790 1.45554 1.37674 1.04863 1.16856 0.80654 0.82045 0.82252 1.90781 1.42605 1.34915 1.75270 1.22515 1.01967 0.98708 0.94688 1.23951 0.97160 0.98252 0.90958 1.72233 1.17463 1.14531 1.39400 1.78967 1.32731 1.28683 0.78200 1.72407 1.14797 1.14511 1.40014 0.93566 0.95707 0.92370 0.89937 0.93297 0.87682 0.91302 0.77456 0.91679 0.91613 0.91787 0.89799 0.91245 0.89146 0.74603 0.75307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.42 71.98 0.61 -3.94 16 2 C 0.06 1.69 4.36 86.31 0.38 2.07 16 3 N -0.52 -14.38 3.40 -875.50 -2.98 -17.36 16 4 C 0.06 1.82 4.70 85.56 0.40 2.23 16 5 C 0.45 19.97 6.11 87.66 0.54 20.50 16 6 O -0.60 -30.69 13.25 -3.05 -0.04 -30.73 16 7 N -0.58 -29.00 5.29 -306.98 -1.62 -30.62 16 8 C -0.32 -17.78 9.68 84.04 0.81 -16.96 16 9 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 10 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 11 N -0.93 -49.80 13.05 21.66 0.28 -49.52 16 12 Si 0.99 43.02 29.55 68.60 2.03 45.04 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 C 0.07 1.37 2.41 44.91 0.11 1.48 16 17 H 0.10 1.81 7.71 -2.38 -0.02 1.79 16 18 C -0.18 -2.62 8.46 71.98 0.61 -2.01 16 19 C 0.13 2.67 4.95 86.38 0.43 3.10 16 20 N -0.69 -17.47 5.39 -466.07 -2.51 -19.98 16 21 C 0.60 16.12 7.82 86.76 0.68 16.80 16 22 O -0.56 -16.37 16.80 -3.92 -0.07 -16.43 16 23 C 0.00 -0.12 6.81 41.98 0.29 0.16 16 24 C 0.09 1.89 11.22 85.22 0.96 2.85 16 25 N -0.59 -12.61 11.41 -92.44 -1.05 -13.66 16 26 S 0.77 15.18 23.69 -56.49 -1.34 13.84 16 27 N -0.57 -14.77 11.00 -80.59 -0.89 -15.66 16 28 H 0.05 1.88 6.98 -2.39 -0.02 1.86 16 29 H 0.02 0.98 6.33 -2.39 -0.02 0.96 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.97 6.24 -2.39 -0.01 1.95 16 32 H 0.05 1.14 6.74 -2.39 -0.02 1.13 16 33 H 0.11 2.84 7.52 -2.39 -0.02 2.82 16 34 H 0.07 1.95 7.57 -2.39 -0.02 1.94 16 35 H 0.39 18.71 7.90 -92.71 -0.73 17.98 16 36 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 37 H 0.06 0.97 6.61 -2.39 -0.02 0.96 16 38 H 0.06 0.99 7.56 -2.39 -0.02 0.97 16 39 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.07 1.46 6.62 -2.39 -0.02 1.44 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.42 11.99 7.73 -92.71 -0.72 11.27 16 43 H 0.23 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -69.28 368.04 -2.29 -71.57 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.37 Total: 37.65 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 6.27 Total: 25.86 kcal Atomic # 7 Polarization: -138.03 SS G_CDS: -8.77 Total: -146.80 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.11 Total: -47.17 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 15.18 SS G_CDS: -1.34 Total: 13.84 kcal Total: -69.28 -2.29 -71.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152153770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.244 kcal (2) G-P(sol) polarization free energy of solvation -69.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds