Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47159 * 2 1 4 4 C 1.34224 * 117.00054 * 180.02562 * 3 2 1 5 5 O 1.20818 * 120.00136 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99866 * 180.02562 * 4 3 2 7 7 N 1.46900 * 109.47113 * 173.88359 * 6 4 3 8 8 C 1.46897 * 111.00023 * 68.04624 * 7 6 4 9 9 C 1.53004 * 109.46950 * 75.89116 * 8 7 6 10 10 C 1.53001 * 109.46684 * 180.71992 * 9 8 7 11 11 N 1.46904 * 109.46838 * 180.02562 * 10 9 8 12 12 C 1.38412 * 110.99896 * 304.09141 * 7 6 4 13 13 N 1.32740 * 119.43672 * 106.03922 * 12 7 6 14 14 C 1.31472 * 121.74259 * 179.74876 * 13 12 7 15 15 C 1.40792 * 120.38482 * 0.52374 * 14 13 12 16 16 C 1.41201 * 120.56369 * 179.76287 * 15 14 13 17 17 H 1.07999 * 119.99591 * 149.63490 * 16 15 14 18 18 C 1.39866 * 119.99986 * 329.63248 * 16 15 14 19 19 N 1.30904 * 119.99611 * 159.13389 * 18 16 15 20 20 Si 1.86794 * 120.00035 * 339.13576 * 18 16 15 21 21 H 1.48504 * 109.46933 * 88.94593 * 20 18 16 22 22 H 1.48503 * 109.47306 * 208.94339 * 20 18 16 23 23 H 1.48495 * 109.47589 * 328.94642 * 20 18 16 24 24 C 1.41283 * 118.87124 * 359.74838 * 15 14 13 25 25 C 1.36669 * 118.40019 * 359.97438 * 24 15 14 26 26 Cl 1.73598 * 120.26270 * 179.97438 * 25 24 15 27 27 H 1.08997 * 109.47583 * 60.00110 * 1 2 3 28 28 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47169 * 299.99766 * 1 2 3 30 30 H 1.09002 * 109.47169 * 240.00234 * 2 1 3 31 31 H 1.08990 * 109.47409 * 120.00275 * 2 1 3 32 32 H 1.09000 * 109.47277 * 293.88817 * 6 4 3 33 33 H 1.09002 * 109.47072 * 53.88244 * 6 4 3 34 34 H 1.09004 * 109.47028 * 195.89050 * 8 7 6 35 35 H 1.08999 * 109.47187 * 315.88688 * 8 7 6 36 36 H 1.08999 * 109.47139 * 300.71233 * 9 8 7 37 37 H 1.08995 * 109.47454 * 60.71676 * 9 8 7 38 38 H 1.09007 * 109.46941 * 299.99717 * 10 9 8 39 39 H 1.08995 * 109.47433 * 59.99671 * 10 9 8 40 40 H 1.00897 * 110.99836 * 179.97438 * 11 10 9 41 41 H 1.00891 * 110.99729 * 303.94986 * 11 10 9 42 42 H 1.07992 * 119.81045 * 180.24933 * 14 13 12 43 43 H 0.96999 * 119.99106 * 179.97438 * 19 18 16 44 44 H 1.08005 * 120.80118 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 7 5.3804 2.8635 0.1468 8 6 6.0005 2.2744 -1.0474 9 6 6.0198 3.3085 -2.1749 10 6 6.6493 2.6891 -3.4242 11 7 6.6684 3.6822 -4.5066 12 6 5.7293 2.1587 1.2858 13 7 6.2141 0.9286 1.1689 14 6 6.5644 0.2204 2.2197 15 6 6.4225 0.7514 3.5159 16 6 6.7929 -0.0077 4.6474 17 1 7.1528 0.4887 5.5364 18 6 6.6936 -1.4025 4.6167 19 7 7.3896 -2.1268 5.4562 20 14 5.5681 -2.2318 3.3779 21 1 6.3163 -2.4832 2.1201 22 1 5.0857 -3.5218 3.9332 23 1 4.4074 -1.3497 3.0955 24 6 5.9035 2.0570 3.6652 25 6 5.5601 2.7526 2.5400 26 17 4.9171 4.3601 2.6673 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.6745 3.4328 -0.9392 33 1 3.5001 3.5042 0.8307 34 1 7.0214 1.9713 -0.8148 35 1 5.4260 1.4035 -1.3630 36 1 4.9998 3.6210 -2.3988 37 1 6.6049 4.1740 -1.8641 38 1 7.6693 2.3766 -3.2003 39 1 6.0641 1.8236 -3.7350 40 1 7.0803 3.2972 -5.3433 41 1 5.7413 4.0358 -4.6892 42 1 6.9592 -0.7761 2.0882 43 1 7.3204 -3.0940 5.4352 44 1 5.7818 2.4951 4.6448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157551504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = -66.891914 kcal Electronic energy + Delta-G solvation = -28648.247214 eV Core-core repulsion = 24626.001369 eV Total energy + Delta-G solvation = -4022.245845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08952 -40.71481 -38.70401 -37.42399 -37.26724 -36.24101 -35.49669 -33.21173 -32.74976 -32.17578 -31.09210 -29.00989 -26.69522 -25.18485 -24.12595 -24.04558 -22.70767 -22.34499 -21.35415 -19.78722 -18.91240 -18.47643 -17.91783 -17.54346 -17.22391 -16.96432 -16.64492 -16.26289 -16.19034 -15.83266 -15.36312 -15.14063 -14.95025 -14.70373 -14.44607 -14.30891 -13.94732 -13.69633 -13.52912 -13.30739 -13.06253 -12.94683 -12.86796 -12.81979 -12.59295 -12.53301 -12.46402 -12.33669 -12.08172 -11.91244 -11.72595 -11.61544 -11.54004 -11.27964 -10.47100 -10.23549 -10.03094 -9.61164 -9.15816 -9.10641 -6.63217 0.28096 0.55391 1.16412 1.18088 1.22914 1.27834 1.32769 1.68572 1.96097 2.36165 2.66378 3.25921 3.63510 3.78498 3.82841 3.89910 3.96998 4.03779 4.17176 4.22847 4.24641 4.33190 4.37507 4.41413 4.47195 4.58132 4.70299 4.76225 4.79245 4.83518 4.85267 4.95292 5.08298 5.10729 5.21928 5.35419 5.40176 5.45869 5.62841 5.80486 6.01750 6.15993 6.22789 6.43090 6.54483 6.63133 6.74897 7.38846 7.95882 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.004740 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.795569 B = 5906.027274 C = 6646.034334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 O -0.363 6.363 4 C 0.413 3.587 5 O -0.507 6.507 6 C 0.060 3.940 7 N -0.431 5.431 8 C 0.069 3.931 9 C -0.101 4.101 10 C 0.068 3.932 11 N -0.854 5.854 12 C 0.161 3.839 13 N -0.434 5.434 14 C -0.035 4.035 15 C 0.037 3.963 16 C -0.455 4.455 17 H 0.078 0.922 18 C 0.067 3.933 19 N -0.816 5.816 20 Si 0.953 3.047 21 H -0.263 1.263 22 H -0.261 1.261 23 H -0.277 1.277 24 C -0.171 4.171 25 C -0.025 4.025 26 Cl -0.054 7.054 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.156 0.844 33 H 0.124 0.876 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.350 0.650 41 H 0.348 0.652 42 H 0.129 0.871 43 H 0.301 0.699 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.284 7.012 -14.337 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 O -0.280 6.280 4 C 0.254 3.746 5 O -0.393 6.393 6 C -0.069 4.069 7 N -0.150 5.150 8 C -0.059 4.059 9 C -0.139 4.139 10 C -0.064 4.064 11 N -0.385 5.385 12 C -0.070 4.070 13 N -0.144 5.144 14 C -0.197 4.197 15 C 0.031 3.969 16 C -0.484 4.484 17 H 0.096 0.904 18 C -0.153 4.153 19 N -0.440 5.440 20 Si 0.778 3.222 21 H -0.189 1.189 22 H -0.187 1.187 23 H -0.202 1.202 24 C -0.198 4.198 25 C -0.056 4.056 26 Cl -0.025 7.025 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.173 0.827 33 H 0.141 0.859 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.146 0.854 43 H 0.112 0.888 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.295 7.149 -14.462 19.137 hybrid contribution -0.911 -2.046 0.491 2.293 sum -11.206 5.103 -13.971 18.623 Atomic orbital electron populations 1.21791 0.89613 1.04302 1.04019 1.23155 0.97597 0.79991 1.01282 1.86513 1.24528 1.32900 1.84015 1.25760 0.81042 0.95088 0.72673 1.90821 1.60170 1.43815 1.44528 1.22542 0.86790 0.89209 1.08325 1.59887 1.05782 1.47862 1.01515 1.21945 0.99391 0.96025 0.88539 1.21478 1.01768 0.98021 0.92637 1.21594 1.00271 0.92854 0.91666 1.58647 1.28555 1.39905 1.11383 1.18936 1.09098 0.89536 0.89429 1.67294 1.08778 1.04222 1.34151 1.22522 1.08532 1.00551 0.88099 1.18632 0.91156 0.93210 0.93883 1.19343 1.37497 0.91568 0.99992 0.90376 1.26518 0.94636 0.97603 0.96523 1.69712 1.31280 1.09248 1.33731 0.85727 0.79749 0.78113 0.78610 1.18871 1.18655 1.20184 1.21202 1.04875 0.96139 0.97580 1.21070 1.02929 0.87572 0.94004 1.98276 1.84620 1.21371 1.98221 0.90200 0.88509 0.91441 0.91510 0.93998 0.82695 0.85875 0.92391 0.93637 0.90668 0.90967 0.91952 0.95659 0.83675 0.83875 0.85354 0.88785 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.29 71.98 0.74 -1.70 16 2 C 0.05 1.43 6.19 71.98 0.45 1.87 16 3 O -0.36 -10.74 10.22 -51.36 -0.52 -11.27 16 4 C 0.41 13.93 7.20 71.24 0.51 14.44 16 5 O -0.51 -21.11 11.37 21.99 0.25 -20.86 16 6 C 0.06 1.68 5.58 85.56 0.48 2.16 16 7 N -0.43 -14.50 4.18 -705.80 -2.95 -17.45 16 8 C 0.07 2.19 3.99 86.31 0.34 2.53 16 9 C -0.10 -2.34 5.60 30.60 0.17 -2.17 16 10 C 0.07 1.43 6.79 86.30 0.59 2.01 16 11 N -0.85 -14.51 9.62 -186.71 -1.80 -16.31 16 12 C 0.16 6.75 4.72 133.32 0.63 7.38 16 13 N -0.43 -20.62 6.78 -191.09 -1.30 -21.92 16 14 C -0.03 -1.75 8.57 85.37 0.73 -1.02 16 15 C 0.04 1.84 5.07 -21.18 -0.11 1.74 16 16 C -0.46 -24.21 9.56 23.39 0.22 -23.98 16 17 H 0.08 4.34 8.06 -2.91 -0.02 4.31 16 18 C 0.07 3.41 5.36 85.23 0.46 3.87 16 19 N -0.82 -41.92 13.93 21.82 0.30 -41.61 16 20 Si 0.95 43.36 24.84 68.60 1.70 45.06 16 21 H -0.26 -11.98 6.39 99.48 0.64 -11.35 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 24 C -0.17 -7.79 9.66 22.65 0.22 -7.57 16 25 C -0.03 -1.04 6.17 22.28 0.14 -0.90 16 26 Cl -0.05 -1.74 26.53 -2.72 -0.07 -1.81 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 31 H 0.04 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.16 3.08 6.67 -2.39 -0.02 3.06 16 33 H 0.12 3.36 6.22 -2.39 -0.01 3.34 16 34 H 0.06 2.14 7.46 -2.39 -0.02 2.12 16 35 H 0.05 1.60 5.80 -2.39 -0.01 1.58 16 36 H 0.07 1.44 6.80 -2.39 -0.02 1.42 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.35 4.77 9.08 -89.70 -0.81 3.95 16 41 H 0.35 4.75 8.99 -89.70 -0.81 3.94 16 42 H 0.13 6.60 4.83 -2.91 -0.01 6.58 16 43 H 0.30 13.83 8.30 -92.71 -0.77 13.06 16 44 H 0.13 5.66 8.06 -2.91 -0.02 5.64 16 Total: -1.00 -63.01 368.20 0.55 -62.46 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.64 Total: 25.04 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.57 Total: -1.34 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -5.74 Total: -97.29 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.27 Total: -32.12 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.70 Total: 45.06 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Total: -63.01 0.55 -62.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157551504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.436 kcal (2) G-P(sol) polarization free energy of solvation -63.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds