Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45200 * 109.46814 * 2 1 4 4 C 1.34726 * 116.99598 * 179.97438 * 3 2 1 5 5 O 1.21482 * 120.00083 * 0.02562 * 4 3 2 6 6 C 1.47636 * 120.00123 * 179.97438 * 4 3 2 7 7 C 1.40121 * 121.19158 * 90.22181 * 6 4 3 8 8 C 1.50706 * 121.05068 * 359.97438 * 7 6 4 9 9 C 1.38461 * 117.89570 * 180.22910 * 7 6 4 10 10 C 1.50703 * 119.90392 * 179.77239 * 9 7 6 11 11 N 1.31902 * 120.19008 * 359.79060 * 9 7 6 12 12 N 1.28275 * 122.66573 * 359.97438 * 11 9 7 13 13 C 1.32669 * 122.18921 * 359.97438 * 12 11 9 14 14 N 1.38485 * 120.28052 * 179.97438 * 13 12 11 15 15 C 1.38448 * 119.99708 * 355.12438 * 14 13 12 16 16 C 1.38939 * 120.00262 * 299.94706 * 15 14 13 17 17 H 1.07999 * 119.99927 * 159.34761 * 16 15 14 18 18 C 1.40865 * 119.99951 * 339.07344 * 16 15 14 19 19 N 1.30318 * 120.00046 * 350.18815 * 18 16 15 20 20 Si 1.86800 * 120.00058 * 170.19621 * 18 16 15 21 21 H 1.48496 * 109.47204 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47032 * 119.99902 * 20 18 16 23 23 H 1.48501 * 109.46783 * 239.99726 * 20 18 16 24 24 C 1.41133 * 119.99446 * 119.94789 * 15 14 13 25 25 C 1.43200 * 120.00425 * 5.95287 * 24 15 14 26 26 N 6.39752 * 137.16328 * 282.81092 * 2 1 3 27 27 C 1.43203 * 119.99616 * 185.95071 * 24 15 14 28 28 N 9.03921 * 116.26942 * 304.95273 * 2 1 3 29 29 H 1.08997 * 109.47001 * 300.00276 * 1 2 3 30 30 H 1.08991 * 109.47134 * 60.00231 * 1 2 3 31 31 H 1.09004 * 109.47287 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47001 * 239.99723 * 2 1 3 33 33 H 1.09001 * 109.46589 * 119.99705 * 2 1 3 34 34 H 1.08997 * 109.47072 * 270.26020 * 8 7 6 35 35 H 1.08999 * 109.46782 * 30.26014 * 8 7 6 36 36 H 1.08999 * 109.46900 * 150.26032 * 8 7 6 37 37 H 1.09001 * 109.46751 * 270.01698 * 10 9 7 38 38 H 1.08999 * 109.47155 * 30.01883 * 10 9 7 39 39 H 1.08994 * 109.47282 * 150.02344 * 10 9 7 40 40 H 0.96996 * 119.99841 * 175.12797 * 14 13 12 41 41 H 0.96998 * 120.00478 * 185.05234 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5455 0.0005 5 8 4.0896 0.5821 0.0005 6 6 3.9140 2.9097 0.0000 7 6 4.1951 3.5792 1.1984 8 6 3.9304 2.9297 2.5323 9 6 4.7187 4.8585 1.1183 10 6 5.0330 5.6220 2.3790 11 7 4.9428 5.4110 -0.0583 12 7 4.6952 4.8097 -1.1640 13 6 4.1937 3.5822 -1.2040 14 7 3.9410 2.9704 -2.4204 15 6 4.1161 3.6751 -3.5992 16 6 3.3834 4.8323 -3.8323 17 1 3.7306 5.5547 -4.5561 18 6 2.1847 5.0606 -3.1285 19 7 1.6626 4.1105 -2.4053 20 14 1.3433 6.7252 -3.2321 21 1 2.1322 7.6247 -4.1116 22 1 -0.0213 6.5559 -3.7928 23 1 1.2504 7.3182 -1.8738 24 6 5.0390 3.2178 -4.5641 25 6 5.7000 1.9604 -4.3835 26 7 6.2213 0.9645 -4.2415 27 6 5.3143 4.0113 -5.7240 28 7 5.5307 4.6437 -6.6436 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9155 3.1625 2.8547 35 1 4.0433 1.8496 2.4391 36 1 4.6409 3.3073 3.2676 37 1 4.1576 6.1951 2.6845 38 1 5.3032 4.9221 3.1698 39 1 5.8655 6.3009 2.1947 40 1 3.6414 2.0483 -2.4465 41 1 0.8009 4.2425 -1.9800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169077970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = 27.356502 kcal Electronic energy + Delta-G solvation = -29895.457122 eV Core-core repulsion = 25776.190701 eV Total energy + Delta-G solvation = -4119.266421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17106 -39.89235 -37.79318 -36.55598 -35.45369 -34.74448 -34.58792 -34.02533 -32.50598 -31.62518 -30.26849 -28.40273 -27.30175 -27.10588 -25.05810 -23.04087 -22.63881 -21.22198 -20.92326 -19.23490 -18.11341 -17.74509 -17.28620 -16.76351 -16.59727 -16.27696 -16.08479 -15.18110 -15.08061 -14.17391 -13.98812 -13.86297 -13.47174 -13.36640 -13.18143 -12.94163 -12.85547 -12.79655 -12.62345 -12.56420 -12.31137 -12.01352 -11.88784 -11.81703 -11.72187 -11.67856 -11.57493 -11.52269 -11.10880 -10.93422 -10.86799 -10.81482 -10.63754 -10.54202 -10.31208 -10.13004 -9.56017 -9.20646 -8.43441 -7.86722 -7.22736 -5.41365 0.84727 1.40329 2.05710 2.17926 2.66239 2.71622 2.81058 2.85641 3.40240 3.47234 3.88771 3.93053 4.08998 4.20558 4.32882 4.39805 4.55311 4.65107 4.82953 4.85973 4.90193 4.95336 5.18149 5.19079 5.30465 5.32155 5.39823 5.56997 5.60849 5.62488 5.69130 5.75182 5.79749 5.84607 5.89814 6.15015 6.18803 6.34734 6.37350 6.43186 7.00600 7.17441 7.52927 7.68631 7.71403 7.94968 8.21932 8.96941 9.14581 9.16922 9.26614 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008128 B = 0.005407 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.221033 B = 5176.951196 C = 5722.903515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.336 6.336 4 C 0.530 3.470 5 O -0.493 6.493 6 C -0.177 4.177 7 C -0.005 4.005 8 C -0.122 4.122 9 C -0.011 4.011 10 C -0.087 4.087 11 N -0.179 5.179 12 N -0.267 5.267 13 C 0.418 3.582 14 N -0.618 5.618 15 C 0.374 3.626 16 C -0.342 4.342 17 H 0.116 0.884 18 C 0.072 3.928 19 N -0.726 5.726 20 Si 0.927 3.073 21 H -0.245 1.245 22 H -0.264 1.264 23 H -0.262 1.262 24 C -0.311 4.311 25 C 0.306 3.694 26 N -0.531 5.531 27 C 0.328 3.672 28 N -0.532 5.532 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.407 0.593 41 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 -0.420 15.729 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.252 6.252 4 C 0.371 3.629 5 O -0.380 6.380 6 C -0.195 4.195 7 C -0.016 4.016 8 C -0.179 4.179 9 C -0.159 4.159 10 C -0.145 4.145 11 N -0.024 5.024 12 N -0.121 5.121 13 C 0.176 3.824 14 N -0.240 5.240 15 C 0.271 3.729 16 C -0.369 4.369 17 H 0.134 0.866 18 C -0.158 4.158 19 N -0.345 5.345 20 Si 0.748 3.252 21 H -0.167 1.167 22 H -0.188 1.188 23 H -0.186 1.186 24 C -0.329 4.329 25 C -0.002 4.002 26 N -0.213 5.213 27 C 0.020 3.980 28 N -0.214 5.214 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.245 0.755 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.354 -0.049 13.709 15.557 hybrid contribution -1.464 -1.183 1.055 2.158 sum -8.819 -1.232 14.764 17.241 Atomic orbital electron populations 1.21780 0.92460 1.02737 1.03757 1.23079 0.95581 0.80266 1.02584 1.86740 1.23169 1.31961 1.83292 1.20729 0.81029 0.88959 0.72147 1.90900 1.60617 1.41886 1.44588 1.19321 1.10903 0.95165 0.94099 1.20629 0.93146 0.93426 0.94402 1.20951 1.03389 1.00701 0.92829 1.22200 1.03921 0.93157 0.96621 1.20513 1.02704 0.99498 0.91816 1.72636 1.07991 1.27459 0.94341 1.73420 1.15759 1.05423 1.17478 1.19474 0.88098 0.90168 0.84654 1.41087 1.67235 1.14158 1.01519 1.16680 0.86998 0.88011 0.81203 1.20300 1.00178 1.02903 1.13540 0.86599 1.26573 0.97813 1.00212 0.91239 1.69461 1.15509 1.33162 1.16381 0.85856 0.79155 0.79663 0.80485 1.16723 1.18825 1.18597 1.12784 1.22555 0.96596 1.00983 1.25105 0.91167 0.91757 0.92129 1.80953 1.15030 1.14411 1.10899 1.24602 0.91004 0.91559 0.90857 1.81092 1.14666 1.12116 1.13549 0.91644 0.91034 0.90388 0.90984 0.91393 0.89479 0.91157 0.89458 0.90780 0.90865 0.90382 0.75516 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 37.16 0.38 -0.96 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.34 -5.04 10.23 -40.56 -0.42 -5.45 16 4 C 0.53 9.03 5.01 34.57 0.17 9.20 16 5 O -0.49 -9.36 16.90 -19.25 -0.33 -9.69 16 6 C -0.18 -3.14 5.81 -104.42 -0.61 -3.75 16 7 C 0.00 -0.07 5.96 -103.83 -0.62 -0.69 16 8 C -0.12 -1.27 9.32 36.01 0.34 -0.93 16 9 C -0.01 -0.17 6.86 -82.48 -0.57 -0.74 16 10 C -0.09 -0.89 9.81 36.01 0.35 -0.53 16 11 N -0.18 -3.33 11.39 33.56 0.38 -2.95 16 12 N -0.27 -5.57 10.06 31.41 0.32 -5.25 16 13 C 0.42 8.37 5.97 -154.69 -0.92 7.45 16 14 N -0.62 -12.76 3.25 -9.44 -0.03 -12.79 16 15 C 0.37 8.17 5.47 -83.52 -0.46 7.71 16 16 C -0.34 -7.27 7.83 -38.33 -0.30 -7.57 16 17 H 0.12 2.52 7.00 -52.49 -0.37 2.15 16 18 C 0.07 1.40 4.97 -17.20 -0.09 1.32 16 19 N -0.73 -13.74 11.01 55.60 0.61 -13.12 16 20 Si 0.93 15.45 29.58 -169.99 -5.03 10.43 16 21 H -0.24 -4.21 7.11 56.52 0.40 -3.81 16 22 H -0.26 -4.22 7.11 56.52 0.40 -3.82 16 23 H -0.26 -4.41 7.11 56.52 0.40 -4.00 16 24 C -0.31 -7.14 5.88 -104.95 -0.62 -7.76 16 25 C 0.31 7.28 14.79 -22.57 -0.33 6.95 16 26 N -0.53 -13.12 18.52 41.72 0.77 -12.35 16 27 C 0.33 7.77 13.90 -22.44 -0.31 7.46 16 28 N -0.53 -12.98 18.54 41.87 0.78 -12.21 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.78 7.25 -51.93 -0.38 0.40 16 36 H 0.09 0.69 6.06 -51.93 -0.31 0.37 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.57 6.04 -51.93 -0.31 0.25 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.41 8.29 7.73 -40.82 -0.32 7.98 16 41 H 0.30 5.20 8.29 -40.82 -0.34 4.86 16 LS Contribution 376.39 15.07 5.67 5.67 Total: -1.00 -28.25 376.39 -4.82 -33.07 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.20 Total: 6.58 kcal Atomic # 6 Polarization: 21.42 SS G_CDS: -3.35 Total: 18.07 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 2.83 Total: -58.67 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.74 Total: -15.14 kcal Atomic # 14 Polarization: 15.45 SS G_CDS: -5.03 Total: 10.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.25 -4.82 -33.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.423 kcal (2) G-P(sol) polarization free energy of solvation -28.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds