Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45200 * 109.46814 * 2 1 4 4 C 1.34726 * 116.99598 * 179.97438 * 3 2 1 5 5 O 1.21482 * 120.00083 * 0.02562 * 4 3 2 6 6 C 1.47636 * 120.00123 * 179.97438 * 4 3 2 7 7 C 1.40121 * 121.19158 * 90.22181 * 6 4 3 8 8 C 1.50706 * 121.05068 * 359.97438 * 7 6 4 9 9 C 1.38461 * 117.89570 * 180.22910 * 7 6 4 10 10 C 1.50703 * 119.90392 * 179.77239 * 9 7 6 11 11 N 1.31902 * 120.19008 * 359.79060 * 9 7 6 12 12 N 1.28275 * 122.66573 * 359.97438 * 11 9 7 13 13 C 1.32669 * 122.18921 * 359.97438 * 12 11 9 14 14 N 1.38485 * 120.28052 * 179.97438 * 13 12 11 15 15 C 1.38448 * 119.99708 * 355.12438 * 14 13 12 16 16 C 1.38939 * 120.00262 * 299.94706 * 15 14 13 17 17 H 1.07999 * 119.99927 * 159.34761 * 16 15 14 18 18 C 1.40865 * 119.99951 * 339.07344 * 16 15 14 19 19 N 1.30318 * 120.00046 * 350.18815 * 18 16 15 20 20 Si 1.86800 * 120.00058 * 170.19621 * 18 16 15 21 21 H 1.48496 * 109.47204 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47032 * 119.99902 * 20 18 16 23 23 H 1.48501 * 109.46783 * 239.99726 * 20 18 16 24 24 C 1.41133 * 119.99446 * 119.94789 * 15 14 13 25 25 C 1.43200 * 120.00425 * 5.95287 * 24 15 14 26 26 N 6.39752 * 137.16328 * 282.81092 * 2 1 3 27 27 C 1.43203 * 119.99616 * 185.95071 * 24 15 14 28 28 N 9.03921 * 116.26942 * 304.95273 * 2 1 3 29 29 H 1.08997 * 109.47001 * 300.00276 * 1 2 3 30 30 H 1.08991 * 109.47134 * 60.00231 * 1 2 3 31 31 H 1.09004 * 109.47287 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47001 * 239.99723 * 2 1 3 33 33 H 1.09001 * 109.46589 * 119.99705 * 2 1 3 34 34 H 1.08997 * 109.47072 * 270.26020 * 8 7 6 35 35 H 1.08999 * 109.46782 * 30.26014 * 8 7 6 36 36 H 1.08999 * 109.46900 * 150.26032 * 8 7 6 37 37 H 1.09001 * 109.46751 * 270.01698 * 10 9 7 38 38 H 1.08999 * 109.47155 * 30.01883 * 10 9 7 39 39 H 1.08994 * 109.47282 * 150.02344 * 10 9 7 40 40 H 0.96996 * 119.99841 * 175.12797 * 14 13 12 41 41 H 0.96998 * 120.00478 * 185.05234 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5455 0.0005 5 8 4.0896 0.5821 0.0005 6 6 3.9140 2.9097 0.0000 7 6 4.1951 3.5792 1.1984 8 6 3.9304 2.9297 2.5323 9 6 4.7187 4.8585 1.1183 10 6 5.0330 5.6220 2.3790 11 7 4.9428 5.4110 -0.0583 12 7 4.6952 4.8097 -1.1640 13 6 4.1937 3.5822 -1.2040 14 7 3.9410 2.9704 -2.4204 15 6 4.1161 3.6751 -3.5992 16 6 3.3834 4.8323 -3.8323 17 1 3.7306 5.5547 -4.5561 18 6 2.1847 5.0606 -3.1285 19 7 1.6626 4.1105 -2.4053 20 14 1.3433 6.7252 -3.2321 21 1 2.1322 7.6247 -4.1116 22 1 -0.0213 6.5559 -3.7928 23 1 1.2504 7.3182 -1.8738 24 6 5.0390 3.2178 -4.5641 25 6 5.7000 1.9604 -4.3835 26 7 6.2213 0.9645 -4.2415 27 6 5.3143 4.0113 -5.7240 28 7 5.5307 4.6437 -6.6436 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9155 3.1625 2.8547 35 1 4.0433 1.8496 2.4391 36 1 4.6409 3.3073 3.2676 37 1 4.1576 6.1951 2.6845 38 1 5.3032 4.9221 3.1698 39 1 5.8655 6.3009 2.1947 40 1 3.6414 2.0483 -2.4465 41 1 0.8009 4.2425 -1.9800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169077970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = 12.602361 kcal Electronic energy + Delta-G solvation = -29896.096910 eV Core-core repulsion = 25776.190701 eV Total energy + Delta-G solvation = -4119.906209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.48374 -41.17017 -39.34734 -37.79579 -37.23414 -36.61521 -35.84861 -35.50882 -33.91733 -32.55641 -31.68075 -29.53159 -28.82349 -28.46981 -26.18010 -24.26105 -23.79708 -22.69596 -22.16239 -20.86856 -19.55215 -19.06885 -18.84792 -18.19462 -17.88079 -17.79875 -17.25217 -16.64401 -16.31039 -15.35077 -15.25133 -15.06156 -14.71842 -14.54740 -14.46453 -14.33842 -14.18444 -13.95703 -13.81384 -13.68010 -13.60621 -13.51709 -13.44966 -13.26038 -13.16510 -12.97586 -12.80992 -12.76421 -12.68180 -12.55587 -12.21639 -12.14191 -11.92359 -11.83082 -11.57395 -11.56983 -10.76705 -10.52617 -10.01505 -9.38116 -8.76568 -7.16325 -0.44077 0.05724 0.65660 0.75392 1.32264 1.47829 1.48540 1.48904 1.92835 2.03345 2.05639 2.17608 2.47061 2.56656 2.62878 3.15422 3.37779 3.43706 3.51628 3.65087 3.77312 3.83827 3.98652 4.04909 4.22478 4.30094 4.33274 4.56871 4.58718 4.64181 4.73523 4.78441 4.82280 4.92450 4.93941 4.99107 5.06298 5.16740 5.31744 5.32882 5.45599 5.57411 5.90259 6.07219 6.36545 6.45168 6.59164 7.11231 7.29447 7.65639 7.91389 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008128 B = 0.005407 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.221033 B = 5176.951196 C = 5722.903515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.337 6.337 4 C 0.538 3.462 5 O -0.521 6.521 6 C -0.196 4.196 7 C 0.003 3.997 8 C -0.120 4.120 9 C -0.001 4.001 10 C -0.087 4.087 11 N -0.211 5.211 12 N -0.307 5.307 13 C 0.399 3.601 14 N -0.624 5.624 15 C 0.366 3.634 16 C -0.337 4.337 17 H 0.106 0.894 18 C 0.047 3.953 19 N -0.720 5.720 20 Si 0.978 3.022 21 H -0.256 1.256 22 H -0.246 1.246 23 H -0.260 1.260 24 C -0.330 4.330 25 C 0.313 3.687 26 N -0.557 5.557 27 C 0.332 3.668 28 N -0.553 5.553 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.403 0.597 41 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.121 0.274 19.040 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.253 6.253 4 C 0.381 3.619 5 O -0.410 6.410 6 C -0.213 4.213 7 C -0.009 4.009 8 C -0.176 4.176 9 C -0.150 4.150 10 C -0.145 4.145 11 N -0.054 5.054 12 N -0.158 5.158 13 C 0.158 3.842 14 N -0.247 5.247 15 C 0.263 3.737 16 C -0.364 4.364 17 H 0.124 0.876 18 C -0.184 4.184 19 N -0.338 5.338 20 Si 0.797 3.203 21 H -0.180 1.180 22 H -0.170 1.170 23 H -0.184 1.184 24 C -0.350 4.350 25 C 0.007 3.993 26 N -0.240 5.240 27 C 0.025 3.975 28 N -0.237 5.237 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.240 0.760 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.425 0.651 17.037 19.481 hybrid contribution -0.943 -1.365 0.278 1.682 sum -10.368 -0.714 17.315 20.194 Atomic orbital electron populations 1.21800 0.89957 1.04432 1.03734 1.23434 0.97470 0.78747 1.02752 1.86730 1.21887 1.33986 1.82656 1.20629 0.81505 0.88403 0.71387 1.90880 1.61356 1.42605 1.46144 1.19614 1.11493 0.95630 0.94522 1.21249 0.90980 0.93147 0.95481 1.21138 1.05760 0.99961 0.90754 1.23042 1.01288 0.93479 0.97189 1.20743 1.03713 1.00019 0.89982 1.72561 1.09500 1.28219 0.95127 1.73308 1.17271 1.06136 1.19105 1.19592 0.89080 0.90613 0.84923 1.40937 1.68413 1.13887 1.01478 1.16671 0.86882 0.88567 0.81612 1.20448 1.00528 1.02314 1.13065 0.87586 1.27082 0.97562 1.02643 0.91080 1.69441 1.15742 1.33843 1.14790 0.85133 0.78908 0.76113 0.80196 1.17967 1.16960 1.18419 1.12884 1.23896 0.96599 1.01595 1.25239 0.90757 0.91757 0.91550 1.80925 1.16165 1.15146 1.11801 1.24740 0.90597 0.91325 0.90796 1.81064 1.15621 1.12803 1.14172 0.90601 0.92022 0.87829 0.92092 0.90065 0.86955 0.91841 0.86122 0.88640 0.87580 0.90253 0.75979 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 10.29 71.98 0.74 -1.48 16 2 C 0.05 1.10 6.19 71.98 0.45 1.55 16 3 O -0.34 -9.79 10.23 -56.36 -0.58 -10.37 16 4 C 0.54 18.15 5.01 70.30 0.35 18.50 16 5 O -0.52 -19.91 16.90 19.89 0.34 -19.57 16 6 C -0.20 -6.83 5.81 -19.73 -0.11 -6.95 16 7 C 0.00 0.08 5.96 -19.35 -0.12 -0.04 16 8 C -0.12 -2.01 9.32 71.24 0.66 -1.35 16 9 C 0.00 -0.01 6.86 42.60 0.29 0.28 16 10 C -0.09 -1.41 9.81 71.24 0.70 -0.71 16 11 N -0.21 -7.76 11.39 -47.73 -0.54 -8.30 16 12 N -0.31 -12.95 10.06 -54.55 -0.55 -13.50 16 13 C 0.40 16.23 5.97 133.55 0.80 17.03 16 14 N -0.62 -26.56 3.25 -183.77 -0.60 -27.15 16 15 C 0.37 16.53 5.47 38.98 0.21 16.75 16 16 C -0.34 -14.61 7.83 23.08 0.18 -14.43 16 17 H 0.11 4.75 7.00 -2.91 -0.02 4.73 16 18 C 0.05 1.81 4.97 85.56 0.43 2.24 16 19 N -0.72 -26.67 11.01 21.98 0.24 -26.43 16 20 Si 0.98 30.56 29.58 68.60 2.03 32.59 16 21 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 22 H -0.25 -7.00 7.11 99.48 0.71 -6.29 16 23 H -0.26 -8.04 7.11 99.48 0.71 -7.33 16 24 C -0.33 -15.83 5.88 -20.08 -0.12 -15.94 16 25 C 0.31 15.50 14.79 88.37 1.31 16.81 16 26 N -0.56 -28.50 18.52 18.97 0.35 -28.15 16 27 C 0.33 16.30 13.90 88.32 1.23 17.52 16 28 N -0.55 -27.75 18.54 19.02 0.35 -27.39 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.22 7.25 -2.39 -0.02 1.20 16 36 H 0.12 1.23 6.06 -2.39 -0.01 1.22 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.05 6.04 -2.39 -0.01 1.03 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.40 17.13 7.73 -92.71 -0.72 16.41 16 41 H 0.32 10.28 8.29 -92.71 -0.77 9.51 16 Total: -1.00 -64.09 376.39 8.45 -55.64 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.41 Total: 22.87 kcal Atomic # 6 Polarization: 42.77 SS G_CDS: 7.00 Total: 49.77 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -0.74 Total: -130.92 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.24 Total: -29.94 kcal Atomic # 14 Polarization: 30.56 SS G_CDS: 2.03 Total: 32.59 kcal Total: -64.09 8.45 -55.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.238 kcal (2) G-P(sol) polarization free energy of solvation -64.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds