Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34762 * 116.99880 * 2 1 4 4 O 1.21527 * 120.00690 * 359.97438 * 3 2 1 5 5 C 1.47300 * 120.00059 * 180.02562 * 3 2 1 6 6 C 1.40024 * 120.57405 * 5.31003 * 5 3 2 7 7 C 1.38900 * 118.29443 * 180.25926 * 6 5 3 8 8 N 1.40064 * 120.32137 * 179.73819 * 7 6 5 9 9 C 1.38237 * 120.00066 * 186.67894 * 8 7 6 10 10 C 1.39030 * 120.00009 * 60.48453 * 9 8 7 11 11 H 1.08003 * 119.99879 * 198.20534 * 10 9 8 12 12 C 1.40821 * 119.99942 * 18.19957 * 10 9 8 13 13 N 1.30346 * 120.00054 * 9.09166 * 12 10 9 14 14 Si 1.86801 * 119.99762 * 189.09149 * 12 10 9 15 15 H 1.48496 * 109.47345 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46780 * 120.00148 * 14 12 10 17 17 H 1.48495 * 109.47069 * 239.99951 * 14 12 10 18 18 C 1.41172 * 120.00004 * 240.47923 * 9 8 7 19 19 C 1.43198 * 120.00321 * 174.75883 * 18 9 8 20 20 N 9.88170 * 173.18453 * 231.17205 * 2 1 3 21 21 C 1.43201 * 119.99836 * 354.48936 * 18 9 8 22 22 N 7.43889 * 148.17043 * 235.55245 * 2 1 3 23 23 C 1.39011 * 119.36261 * 359.47334 * 7 6 5 24 24 N 1.31831 * 121.13122 * 0.27173 * 23 7 6 25 25 C 1.32380 * 121.86316 * 359.97438 * 24 23 7 26 26 N 1.38438 * 119.74490 * 180.02562 * 25 24 23 27 27 C 1.46903 * 111.00465 * 302.86061 * 26 25 24 28 28 C 1.46909 * 111.00058 * 66.81751 * 26 25 24 29 29 H 1.09000 * 109.47692 * 60.00243 * 1 2 3 30 30 H 1.09002 * 109.47607 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47140 * 299.99934 * 1 2 3 32 32 H 1.07998 * 120.85535 * 0.03381 * 6 5 3 33 33 H 0.96999 * 119.99467 * 6.68407 * 8 7 6 34 34 H 0.96993 * 120.00043 * 184.98950 * 13 12 10 35 35 H 1.08005 * 119.43672 * 180.28951 * 23 7 6 36 36 H 1.09002 * 109.46862 * 60.00425 * 27 26 25 37 37 H 1.08997 * 109.47293 * 179.97438 * 27 26 25 38 38 H 1.08995 * 109.46838 * 300.00118 * 27 26 25 39 39 H 1.08994 * 109.46566 * 64.17540 * 28 26 25 40 40 H 1.08999 * 109.47010 * 184.17743 * 28 26 25 41 41 H 1.09000 * 109.46722 * 304.17676 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5347 1.2779 -0.0006 6 6 4.3088 0.1165 -0.1127 7 6 5.6919 0.2436 -0.1026 8 7 6.5070 -0.8907 -0.2066 9 6 7.8764 -0.7739 -0.0576 10 6 8.4076 -0.2964 1.1351 11 1 9.4223 0.0725 1.1650 12 6 7.6227 -0.2936 2.3043 13 7 6.4673 -0.8969 2.3151 14 14 8.2374 0.5747 3.8398 15 1 9.5670 1.1779 3.5687 16 1 7.2786 1.6425 4.2219 17 1 8.3547 -0.4053 4.9492 18 6 8.7354 -1.1395 -1.1166 19 6 10.1451 -0.9140 -1.0055 20 7 11.2638 -0.7353 -0.9136 21 6 8.1976 -1.7412 -2.2995 22 7 7.7722 -2.2192 -3.2353 23 6 6.2595 1.5079 0.0062 24 7 5.5076 2.5862 0.1051 25 6 4.1856 2.5188 0.1052 26 7 3.4386 3.6795 0.2109 27 6 3.7862 4.4202 1.4310 28 6 3.6033 4.5220 -0.9813 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.8424 -0.8536 -0.2010 33 1 6.1106 -1.7582 -0.3833 34 1 5.8947 -0.8341 3.0954 35 1 7.3348 1.6085 0.0094 36 1 4.8431 4.6858 1.4060 37 1 3.1853 5.3277 1.4888 38 1 3.5887 3.7969 2.3030 39 1 3.2045 4.0014 -1.8519 40 1 3.0657 5.4597 -0.8407 41 1 4.6621 4.7299 -1.1358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169084338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = 39.256432 kcal Electronic energy + Delta-G solvation = -29403.158185 eV Core-core repulsion = 25284.407784 eV Total energy + Delta-G solvation = -4118.750401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73000 -39.56654 -38.09804 -36.34697 -35.97401 -35.25714 -34.83102 -33.69189 -32.41245 -31.02786 -28.25535 -27.74506 -27.41108 -27.29397 -24.55160 -24.33836 -21.92962 -21.49339 -20.63464 -19.18673 -17.64945 -17.48243 -17.11382 -16.79535 -16.40259 -16.18858 -15.98798 -15.47865 -15.02966 -14.93872 -13.99001 -13.98330 -13.66999 -13.37631 -13.18516 -12.94777 -12.86700 -12.68761 -12.58824 -12.41289 -12.12342 -12.05793 -11.92073 -11.79255 -11.69646 -11.65580 -11.61265 -11.54155 -11.14139 -11.01098 -10.86435 -10.64988 -10.38324 -10.28856 -10.20380 -9.56688 -9.35559 -8.39823 -8.25897 -7.87344 -6.90001 -5.58830 0.86277 1.56569 2.09291 2.63768 2.73070 2.75738 2.82889 2.92747 3.31536 3.68429 3.79856 3.95310 3.97749 4.09077 4.14668 4.28837 4.85661 4.98799 5.06853 5.10922 5.18285 5.20801 5.29516 5.42017 5.45423 5.50513 5.55872 5.66700 5.75178 5.85411 5.89004 6.02939 6.03350 6.06983 6.23098 6.38940 6.48634 6.58628 6.90603 7.03726 7.10859 7.47624 7.54683 7.62785 7.98966 8.05650 8.22795 8.33172 8.85979 9.02503 9.05712 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.004316 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.928155 B = 6486.270452 C = 7247.327141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.361 6.361 3 C 0.510 3.490 4 O -0.470 6.470 5 C -0.109 4.109 6 C -0.099 4.099 7 C 0.203 3.797 8 N -0.650 5.650 9 C 0.375 3.625 10 C -0.377 4.377 11 H 0.113 0.887 12 C 0.071 3.929 13 N -0.715 5.715 14 Si 0.919 3.081 15 H -0.246 1.246 16 H -0.260 1.260 17 H -0.262 1.262 18 C -0.309 4.309 19 C 0.323 3.677 20 N -0.529 5.529 21 C 0.309 3.691 22 N -0.530 5.530 23 C 0.086 3.914 24 N -0.479 5.479 25 C 0.271 3.729 26 N -0.472 5.472 27 C 0.033 3.967 28 C 0.037 3.963 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.145 0.855 33 H 0.406 0.594 34 H 0.303 0.697 35 H 0.169 0.831 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.082 5.061 5.186 14.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.279 6.279 3 C 0.352 3.648 4 O -0.356 6.356 5 C -0.115 4.115 6 C -0.129 4.129 7 C 0.096 3.904 8 N -0.271 5.271 9 C 0.271 3.729 10 C -0.404 4.404 11 H 0.131 0.869 12 C -0.160 4.160 13 N -0.333 5.333 14 Si 0.740 3.260 15 H -0.168 1.168 16 H -0.184 1.184 17 H -0.186 1.186 18 C -0.327 4.327 19 C 0.015 3.985 20 N -0.211 5.211 21 C 0.002 3.998 22 N -0.212 5.212 23 C -0.079 4.079 24 N -0.190 5.190 25 C 0.041 3.959 26 N -0.194 5.194 27 C -0.114 4.114 28 C -0.111 4.111 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.243 0.757 34 H 0.115 0.885 35 H 0.186 0.814 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.423 5.498 4.144 13.337 hybrid contribution -0.117 -0.619 0.989 1.172 sum -11.540 4.880 5.132 13.539 Atomic orbital electron populations 1.23172 0.76698 1.03267 1.02280 1.86588 1.22949 1.33355 1.84973 1.20826 0.88694 0.81367 0.73892 1.90866 1.65974 1.35310 1.43440 1.19410 0.89712 0.93443 1.08936 1.21187 0.91507 0.98475 1.01738 1.18412 0.89848 0.88554 0.93599 1.41368 1.03973 1.07331 1.74410 1.16759 0.80020 0.86660 0.89447 1.20395 1.00755 1.28700 0.90577 0.86891 1.26464 0.94228 0.93122 1.02235 1.69494 1.07652 1.24041 1.32153 0.85964 0.81496 0.79911 0.78666 1.16838 1.18433 1.18632 1.12927 0.84742 1.38988 0.96070 1.24709 0.91246 0.90735 0.91839 1.81109 1.12128 1.17597 1.10305 1.25067 0.92509 0.90761 0.91487 1.80985 1.09384 1.18339 1.12534 1.22691 1.00697 0.85843 0.98625 1.67719 1.05978 1.32682 1.12579 1.19320 0.86684 0.90286 0.99634 1.59879 1.51414 1.04471 1.03676 1.22323 0.99751 0.97845 0.91508 1.22309 1.00202 0.96561 0.91990 0.92130 0.88430 0.92126 0.83711 0.75698 0.88487 0.81384 0.94081 0.91332 0.91991 0.91784 0.91267 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.46 16 2 O -0.36 -4.92 9.90 -40.66 -0.40 -5.32 16 3 C 0.51 8.01 7.88 34.42 0.27 8.28 16 4 O -0.47 -8.02 14.86 -19.29 -0.29 -8.30 16 5 C -0.11 -1.78 5.90 -104.68 -0.62 -2.40 16 6 C -0.10 -1.54 9.60 -38.67 -0.37 -1.91 16 7 C 0.20 3.38 4.93 -83.56 -0.41 2.96 16 8 N -0.65 -11.05 3.35 -8.09 -0.03 -11.08 16 9 C 0.38 6.97 4.99 -83.57 -0.42 6.55 16 10 C -0.38 -6.94 7.05 -38.31 -0.27 -7.21 16 11 H 0.11 2.15 6.96 -52.48 -0.37 1.79 16 12 C 0.07 1.23 4.72 -17.21 -0.08 1.15 16 13 N -0.72 -12.24 10.73 55.59 0.60 -11.64 16 14 Si 0.92 14.06 29.58 -169.99 -5.03 9.03 16 15 H -0.25 -3.88 7.11 56.52 0.40 -3.48 16 16 H -0.26 -4.06 7.11 56.52 0.40 -3.66 16 17 H -0.26 -4.01 7.11 56.52 0.40 -3.61 16 18 C -0.31 -6.22 5.88 -104.93 -0.62 -6.84 16 19 C 0.32 6.94 13.88 -22.45 -0.31 6.63 16 20 N -0.53 -11.98 18.54 41.86 0.78 -11.21 16 21 C 0.31 6.52 14.80 -22.55 -0.33 6.19 16 22 N -0.53 -11.77 18.52 41.74 0.77 -11.00 16 23 C 0.09 1.50 9.69 -17.27 -0.17 1.33 16 24 N -0.48 -8.26 9.42 -12.01 -0.11 -8.37 16 25 C 0.27 4.54 5.35 -155.06 -0.83 3.71 16 26 N -0.47 -7.29 2.95 -188.70 -0.56 -7.85 16 27 C 0.03 0.45 9.40 60.07 0.56 1.01 16 28 C 0.04 0.49 9.55 60.07 0.57 1.07 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.15 2.03 7.71 -52.49 -0.40 1.63 16 33 H 0.41 6.59 8.83 -40.82 -0.36 6.23 16 34 H 0.30 4.83 8.29 -40.82 -0.34 4.49 16 35 H 0.17 2.95 6.23 -52.48 -0.33 2.62 16 36 H 0.04 0.57 7.78 -51.93 -0.40 0.16 16 37 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.04 0.53 7.87 -51.93 -0.41 0.12 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -24.72 373.86 -4.94 -29.66 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.35 Total: 8.48 kcal Atomic # 6 Polarization: 23.93 SS G_CDS: -1.95 Total: 21.97 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 1.45 Total: -61.15 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.69 Total: -13.63 kcal Atomic # 14 Polarization: 14.06 SS G_CDS: -5.03 Total: 9.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -24.72 -4.94 -29.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.914 kcal (2) G-P(sol) polarization free energy of solvation -24.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds