Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34762 * 116.99880 * 2 1 4 4 O 1.21527 * 120.00690 * 359.97438 * 3 2 1 5 5 C 1.47300 * 120.00059 * 180.02562 * 3 2 1 6 6 C 1.40024 * 120.57405 * 5.31003 * 5 3 2 7 7 C 1.38900 * 118.29443 * 180.25926 * 6 5 3 8 8 N 1.40064 * 120.32137 * 179.73819 * 7 6 5 9 9 C 1.38237 * 120.00066 * 186.67894 * 8 7 6 10 10 C 1.39030 * 120.00009 * 60.48453 * 9 8 7 11 11 H 1.08003 * 119.99879 * 198.20534 * 10 9 8 12 12 C 1.40821 * 119.99942 * 18.19957 * 10 9 8 13 13 N 1.30346 * 120.00054 * 9.09166 * 12 10 9 14 14 Si 1.86801 * 119.99762 * 189.09149 * 12 10 9 15 15 H 1.48496 * 109.47345 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46780 * 120.00148 * 14 12 10 17 17 H 1.48495 * 109.47069 * 239.99951 * 14 12 10 18 18 C 1.41172 * 120.00004 * 240.47923 * 9 8 7 19 19 C 1.43198 * 120.00321 * 174.75883 * 18 9 8 20 20 N 9.88170 * 173.18453 * 231.17205 * 2 1 3 21 21 C 1.43201 * 119.99836 * 354.48936 * 18 9 8 22 22 N 7.43889 * 148.17043 * 235.55245 * 2 1 3 23 23 C 1.39011 * 119.36261 * 359.47334 * 7 6 5 24 24 N 1.31831 * 121.13122 * 0.27173 * 23 7 6 25 25 C 1.32380 * 121.86316 * 359.97438 * 24 23 7 26 26 N 1.38438 * 119.74490 * 180.02562 * 25 24 23 27 27 C 1.46903 * 111.00465 * 302.86061 * 26 25 24 28 28 C 1.46909 * 111.00058 * 66.81751 * 26 25 24 29 29 H 1.09000 * 109.47692 * 60.00243 * 1 2 3 30 30 H 1.09002 * 109.47607 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47140 * 299.99934 * 1 2 3 32 32 H 1.07998 * 120.85535 * 0.03381 * 6 5 3 33 33 H 0.96999 * 119.99467 * 6.68407 * 8 7 6 34 34 H 0.96993 * 120.00043 * 184.98950 * 13 12 10 35 35 H 1.08005 * 119.43672 * 180.28951 * 23 7 6 36 36 H 1.09002 * 109.46862 * 60.00425 * 27 26 25 37 37 H 1.08997 * 109.47293 * 179.97438 * 27 26 25 38 38 H 1.08995 * 109.46838 * 300.00118 * 27 26 25 39 39 H 1.08994 * 109.46566 * 64.17540 * 28 26 25 40 40 H 1.08999 * 109.47010 * 184.17743 * 28 26 25 41 41 H 1.09000 * 109.46722 * 304.17676 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5347 1.2779 -0.0006 6 6 4.3088 0.1165 -0.1127 7 6 5.6919 0.2436 -0.1026 8 7 6.5070 -0.8907 -0.2066 9 6 7.8764 -0.7739 -0.0576 10 6 8.4076 -0.2964 1.1351 11 1 9.4223 0.0725 1.1650 12 6 7.6227 -0.2936 2.3043 13 7 6.4673 -0.8969 2.3151 14 14 8.2374 0.5747 3.8398 15 1 9.5670 1.1779 3.5687 16 1 7.2786 1.6425 4.2219 17 1 8.3547 -0.4053 4.9492 18 6 8.7354 -1.1395 -1.1166 19 6 10.1451 -0.9140 -1.0055 20 7 11.2638 -0.7353 -0.9136 21 6 8.1976 -1.7412 -2.2995 22 7 7.7722 -2.2192 -3.2353 23 6 6.2595 1.5079 0.0062 24 7 5.5076 2.5862 0.1051 25 6 4.1856 2.5188 0.1052 26 7 3.4386 3.6795 0.2109 27 6 3.7862 4.4202 1.4310 28 6 3.6033 4.5220 -0.9813 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.8424 -0.8536 -0.2010 33 1 6.1106 -1.7582 -0.3833 34 1 5.8947 -0.8341 3.0954 35 1 7.3348 1.6085 0.0094 36 1 4.8431 4.6858 1.4060 37 1 3.1853 5.3277 1.4888 38 1 3.5887 3.7969 2.3030 39 1 3.2045 4.0014 -1.8519 40 1 3.0657 5.4597 -0.8407 41 1 4.6621 4.7299 -1.1358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169084338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = 28.200086 kcal Electronic energy + Delta-G solvation = -29403.637624 eV Core-core repulsion = 25284.407784 eV Total energy + Delta-G solvation = -4119.229840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97272 -40.75842 -39.43911 -37.71689 -37.13996 -36.76995 -36.52774 -35.07782 -33.71815 -32.44662 -29.58291 -28.87040 -28.58684 -28.48338 -25.72754 -25.60092 -23.32734 -22.69123 -21.92265 -20.67081 -19.09655 -18.76962 -18.41588 -18.02914 -17.75004 -17.29796 -17.21146 -16.75890 -16.31268 -16.13310 -15.31198 -15.14017 -14.82462 -14.63837 -14.52074 -14.33472 -14.25487 -14.00390 -13.90382 -13.87862 -13.41918 -13.38285 -13.30697 -13.11093 -13.09707 -12.95101 -12.79962 -12.69468 -12.62626 -12.61185 -12.14406 -11.74524 -11.64898 -11.56039 -11.53303 -10.84103 -10.65000 -9.85947 -9.44364 -9.24487 -8.27254 -7.14212 -0.41634 0.24082 0.71387 1.36622 1.49725 1.51579 1.67754 1.77468 2.03967 2.08956 2.26604 2.30669 2.58821 2.69490 2.81270 2.86208 3.43162 3.60569 3.81673 3.84619 3.94541 4.12375 4.30771 4.38955 4.42723 4.44004 4.47645 4.59603 4.65087 4.67676 4.70188 4.76737 4.79521 4.95551 4.97622 5.10894 5.24487 5.39238 5.41237 5.66633 5.93694 6.01707 6.16319 6.31667 6.64282 6.83628 6.88486 6.99178 7.21467 7.36860 7.67355 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.004316 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.928155 B = 6486.270452 C = 7247.327141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.513 3.487 4 O -0.487 6.487 5 C -0.120 4.120 6 C -0.086 4.086 7 C 0.196 3.804 8 N -0.648 5.648 9 C 0.375 3.625 10 C -0.370 4.370 11 H 0.106 0.894 12 C 0.053 3.947 13 N -0.711 5.711 14 Si 0.964 3.036 15 H -0.254 1.254 16 H -0.261 1.261 17 H -0.256 1.256 18 C -0.322 4.322 19 C 0.328 3.672 20 N -0.557 5.557 21 C 0.318 3.682 22 N -0.556 5.556 23 C 0.076 3.924 24 N -0.488 5.488 25 C 0.267 3.733 26 N -0.483 5.483 27 C 0.036 3.964 28 C 0.039 3.961 29 H 0.062 0.938 30 H 0.130 0.870 31 H 0.063 0.937 32 H 0.162 0.838 33 H 0.410 0.590 34 H 0.312 0.688 35 H 0.162 0.838 36 H 0.034 0.966 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.779 5.250 6.429 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.281 6.281 3 C 0.356 3.644 4 O -0.375 6.375 5 C -0.125 4.125 6 C -0.116 4.116 7 C 0.090 3.910 8 N -0.269 5.269 9 C 0.271 3.729 10 C -0.397 4.397 11 H 0.123 0.877 12 C -0.179 4.179 13 N -0.329 5.329 14 Si 0.784 3.216 15 H -0.178 1.178 16 H -0.186 1.186 17 H -0.181 1.181 18 C -0.341 4.341 19 C 0.022 3.978 20 N -0.241 5.241 21 C 0.012 3.988 22 N -0.239 5.239 23 C -0.088 4.088 24 N -0.199 5.199 25 C 0.037 3.963 26 N -0.206 5.206 27 C -0.111 4.111 28 C -0.108 4.108 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.081 0.919 32 H 0.180 0.820 33 H 0.248 0.752 34 H 0.125 0.875 35 H 0.179 0.821 36 H 0.053 0.947 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -13.143 5.667 5.380 15.290 hybrid contribution 0.246 -0.641 0.701 0.981 sum -12.897 5.026 6.081 15.118 Atomic orbital electron populations 1.23516 0.74462 1.05522 1.02554 1.86566 1.25103 1.32051 1.84421 1.20694 0.88405 0.81767 0.73548 1.90850 1.66247 1.35997 1.44382 1.19593 0.90516 0.93501 1.08911 1.21335 0.90949 0.99094 1.00269 1.18412 0.90219 0.88142 0.94232 1.41252 1.03319 1.07620 1.74715 1.16668 0.80620 0.86610 0.89020 1.20500 1.00563 1.27599 0.91062 0.87652 1.26818 0.94335 0.93598 1.03177 1.69461 1.07551 1.22995 1.32912 0.85290 0.80515 0.79100 0.76672 1.17756 1.18570 1.18056 1.12956 0.84341 1.40308 0.96471 1.24915 0.91451 0.90217 0.91240 1.81096 1.12796 1.19026 1.11162 1.25156 0.92015 0.90325 0.91322 1.80978 1.10109 1.19601 1.13176 1.22634 1.00512 0.86302 0.99355 1.67718 1.06420 1.32725 1.13034 1.19597 0.86617 0.91166 0.98954 1.59970 1.51162 1.04665 1.04778 1.22347 0.99828 0.98430 0.90542 1.22327 1.00098 0.97178 0.91163 0.91892 0.85234 0.91869 0.82046 0.75244 0.87491 0.82125 0.94698 0.88985 0.92602 0.92452 0.88920 0.95002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.57 113.37 1.20 1.76 16 2 O -0.36 -9.14 9.90 -56.73 -0.56 -9.70 16 3 C 0.51 15.33 7.88 70.21 0.55 15.88 16 4 O -0.49 -15.92 14.86 19.75 0.29 -15.63 16 5 C -0.12 -3.74 5.90 -19.90 -0.12 -3.86 16 6 C -0.09 -2.57 9.60 22.86 0.22 -2.35 16 7 C 0.20 6.35 4.93 38.17 0.19 6.54 16 8 N -0.65 -21.47 3.35 -179.50 -0.60 -22.07 16 9 C 0.38 13.79 4.99 39.04 0.19 13.98 16 10 C -0.37 -13.40 7.05 23.09 0.16 -13.23 16 11 H 0.11 3.98 6.96 -2.91 -0.02 3.96 16 12 C 0.05 1.74 4.72 85.55 0.40 2.14 16 13 N -0.71 -23.01 10.73 21.98 0.24 -22.77 16 14 Si 0.96 27.44 29.58 68.60 2.03 29.47 16 15 H -0.25 -7.60 7.11 99.48 0.71 -6.89 16 16 H -0.26 -7.51 7.11 99.48 0.71 -6.80 16 17 H -0.26 -7.10 7.11 99.48 0.71 -6.39 16 18 C -0.32 -12.97 5.88 -20.07 -0.12 -13.09 16 19 C 0.33 14.21 13.88 88.32 1.23 15.44 16 20 N -0.56 -25.44 18.54 19.01 0.35 -25.09 16 21 C 0.32 13.42 14.80 88.36 1.31 14.73 16 22 N -0.56 -24.65 18.52 18.97 0.35 -24.30 16 23 C 0.08 2.61 9.69 84.88 0.82 3.43 16 24 N -0.49 -16.56 9.42 -191.92 -1.81 -18.37 16 25 C 0.27 8.70 5.35 133.60 0.72 9.42 16 26 N -0.48 -14.30 2.95 -750.91 -2.21 -16.51 16 27 C 0.04 0.91 9.40 127.69 1.20 2.11 16 28 C 0.04 1.01 9.55 127.69 1.22 2.23 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.16 4.19 7.71 -2.91 -0.02 4.17 16 33 H 0.41 12.87 8.83 -92.71 -0.82 12.05 16 34 H 0.31 9.22 8.29 -92.71 -0.77 8.45 16 35 H 0.16 5.67 6.23 -2.91 -0.02 5.65 16 36 H 0.03 0.92 7.78 -2.39 -0.02 0.91 16 37 H 0.09 1.88 8.07 -2.39 -0.02 1.86 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.91 8.05 -2.39 -0.02 1.89 16 41 H 0.03 0.85 7.87 -2.39 -0.02 0.83 16 Total: -1.00 -51.30 373.86 7.55 -43.75 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.30 Total: 26.11 kcal Atomic # 6 Polarization: 45.95 SS G_CDS: 9.18 Total: 55.13 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -3.68 Total: -129.12 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.27 Total: -25.33 kcal Atomic # 14 Polarization: 27.44 SS G_CDS: 2.03 Total: 29.47 kcal Total: -51.30 7.55 -43.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.946 kcal (2) G-P(sol) polarization free energy of solvation -51.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds