Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.99586 * 2 1 4 4 C 1.54323 * 109.88209 * 121.09888 * 2 1 3 5 5 H 1.09002 * 110.71712 * 215.76581 * 4 2 1 6 6 N 1.46902 * 110.72044 * 338.85650 * 4 2 1 7 7 C 1.46899 * 110.99733 * 205.00217 * 6 4 2 8 8 C 1.50706 * 109.46789 * 179.97438 * 7 6 4 9 9 N 1.30887 * 125.91304 * 274.68967 * 8 7 6 10 10 C 1.33539 * 109.77942 * 179.86638 * 9 8 7 11 11 O 1.35865 * 125.59176 * 180.16963 * 10 9 8 12 12 N 1.31076 * 108.82317 * 0.40502 * 10 9 8 13 13 N 1.34348 * 125.90773 * 95.00320 * 8 7 6 14 14 H 0.97004 * 126.77950 * 359.94179 * 13 8 7 15 15 C 1.55158 * 102.94430 * 97.22463 * 4 2 1 16 16 C 1.54904 * 101.58178 * 35.49693 * 15 4 2 17 17 N 1.47028 * 109.88051 * 238.90343 * 2 1 3 18 18 C 1.34782 * 125.64477 * 59.48609 * 17 2 1 19 19 O 1.21274 * 119.99951 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99667 * 180.02562 * 18 17 2 21 21 S 1.81000 * 109.47207 * 180.02562 * 20 18 17 22 22 C 1.76195 * 100.00008 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00220 * 359.97438 * 22 21 20 24 24 C 1.38803 * 119.99986 * 180.02562 * 22 21 20 25 25 N 1.31626 * 119.99774 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00045 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47057 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46823 * 119.99872 * 26 24 22 29 29 H 1.48501 * 109.47148 * 239.99647 * 26 24 22 30 30 H 1.09002 * 109.46487 * 298.90232 * 1 2 3 31 31 H 1.08998 * 109.47081 * 58.90496 * 1 2 3 32 32 H 1.09000 * 109.46899 * 178.90440 * 1 2 3 33 33 H 1.00902 * 110.99760 * 81.05146 * 6 4 2 34 34 H 1.08999 * 109.47030 * 60.00242 * 7 6 4 35 35 H 1.08998 * 109.47294 * 300.00222 * 7 6 4 36 36 H 0.96701 * 113.99695 * 270.30585 * 11 10 9 37 37 H 1.08993 * 111.00108 * 153.57752 * 15 4 2 38 38 H 1.09004 * 110.99948 * 277.42399 * 15 4 2 39 39 H 1.09000 * 110.36463 * 204.15096 * 16 15 4 40 40 H 1.09000 * 110.45966 * 81.87961 * 16 15 4 41 41 H 1.09001 * 109.47146 * 300.00130 * 20 18 17 42 42 H 1.09000 * 109.47221 * 59.99796 * 20 18 17 43 43 H 0.97001 * 120.00249 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 2.9640 -0.2813 1.6200 6 7 1.0265 -0.8028 2.2904 7 6 1.6358 -0.9506 3.6189 8 6 0.5525 -1.0008 4.6654 9 7 -0.0149 0.0331 5.2332 10 6 -0.9335 -0.3804 6.1098 11 8 -1.7154 0.4252 6.8750 12 7 -0.9538 -1.6910 6.1146 13 7 0.0062 -2.1145 5.1813 14 1 0.2303 -3.0305 4.9536 15 6 2.3519 -2.1695 0.6923 16 6 2.8568 -1.8498 -0.7368 17 7 2.0301 -0.7141 -1.1840 18 6 1.7742 -0.3853 -2.4658 19 8 1.0762 0.5739 -2.7179 20 6 2.3545 -1.2102 -3.5855 21 16 1.8340 -0.5201 -5.1757 22 6 2.6318 -1.6443 -6.2730 23 1 3.2244 -2.4560 -5.8776 24 6 2.4995 -1.4862 -7.6456 25 7 1.7777 -0.4966 -8.1275 26 14 3.3459 -2.6777 -8.8090 27 1 4.0900 -3.6936 -8.0219 28 1 2.3275 -3.3540 -9.6520 29 1 4.2925 -1.9331 -9.6778 30 1 -0.3632 0.4967 0.8997 31 1 -0.3633 0.5307 -0.8800 32 1 -0.3633 -1.0275 -0.0196 33 1 0.3657 -1.5439 2.1111 34 1 2.2907 -0.1017 3.8148 35 1 2.2163 -1.8726 3.6518 36 1 -1.3274 0.6516 7.7314 37 1 3.1270 -2.6618 1.2795 38 1 1.4452 -2.7737 0.6604 39 1 2.7087 -2.7081 -1.3923 40 1 3.9093 -1.5674 -0.7148 41 1 3.4425 -1.1949 -3.5218 42 1 2.0001 -2.2375 -3.5013 43 1 1.6849 -0.3863 -9.0868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178147539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = 33.618945 kcal Electronic energy + Delta-G solvation = -26463.782695 eV Core-core repulsion = 22480.231785 eV Total energy + Delta-G solvation = -3983.550910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.72518 -40.28207 -38.12365 -37.77587 -35.52186 -32.82129 -32.44173 -32.27788 -31.31694 -30.46691 -28.55124 -26.56825 -25.50648 -25.08080 -23.05817 -23.01462 -21.63816 -20.78280 -19.12511 -18.91093 -18.18955 -17.78661 -16.91938 -16.63530 -16.23582 -16.12907 -15.40468 -15.17031 -14.81859 -14.59103 -14.40175 -14.07689 -13.85693 -13.78272 -13.29432 -12.95662 -12.83129 -12.67257 -12.61464 -12.47792 -12.41648 -12.14170 -11.85369 -11.50916 -11.09124 -11.06231 -11.02846 -10.90653 -10.76564 -10.65320 -10.40630 -10.14515 -9.81514 -9.32101 -9.08532 -9.00752 -8.51482 -8.23219 -6.50890 -6.22744 -3.93253 0.87210 1.78928 2.17129 2.77107 2.92355 3.08200 3.20276 3.24275 3.29599 3.54434 3.69442 3.85679 4.07688 4.18974 4.20578 4.33191 4.57744 4.68286 4.88977 4.91267 5.04565 5.06150 5.12439 5.28982 5.38029 5.40374 5.46454 5.48953 5.56696 5.62275 5.66503 5.88121 5.94538 6.09693 6.11881 6.26876 6.39564 6.45310 6.57860 6.70836 6.93506 7.46333 7.58466 7.68182 8.34116 8.58845 9.22545 10.84722 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.033174 B = 0.001799 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.823069 B =15557.768478 C =15964.252898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.078 0.922 4 C 0.084 3.916 5 H 0.101 0.899 6 N -0.665 5.665 7 C 0.136 3.864 8 C 0.306 3.694 9 N -0.525 5.525 10 C 0.404 3.596 11 O -0.439 6.439 12 N -0.310 5.310 13 N -0.467 5.467 14 H 0.445 0.555 15 C -0.164 4.164 16 C 0.104 3.896 17 N -0.625 5.625 18 C 0.550 3.450 19 O -0.510 6.510 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.349 0.651 34 H 0.116 0.884 35 H 0.062 0.938 36 H 0.408 0.592 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.896 -5.982 30.065 30.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.096 0.904 4 C -0.026 4.026 5 H 0.119 0.881 6 N -0.297 5.297 7 C 0.005 3.995 8 C 0.027 3.973 9 N -0.262 5.262 10 C 0.085 3.915 11 O -0.238 6.238 12 N -0.153 5.153 13 N -0.190 5.190 14 H 0.292 0.708 15 C -0.204 4.204 16 C -0.020 4.020 17 N -0.363 5.363 18 C 0.338 3.662 19 O -0.384 6.384 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.169 0.831 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.266 0.734 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.800 -3.659 29.544 29.780 hybrid contribution 2.073 -3.403 -0.261 3.993 sum 2.873 -7.062 29.283 30.259 Atomic orbital electron populations 1.21959 0.94096 1.01711 1.03396 1.21358 0.95624 0.95772 0.82938 0.90374 1.22649 0.94003 0.95075 0.90921 0.88136 1.60316 1.16840 1.53095 0.99456 1.20499 0.90576 1.03553 0.84900 1.24016 0.95784 0.81808 0.95694 1.70306 1.11888 1.30758 1.13264 1.21201 0.90928 0.85667 0.93701 1.84951 1.40673 1.65407 1.32814 1.78242 1.11843 1.12803 1.12377 1.47816 1.28966 1.10182 1.32031 0.70836 1.23524 1.02388 0.97616 0.96849 1.22163 0.95151 0.90071 0.94616 1.48609 1.52068 1.30674 1.04991 1.19973 0.80113 0.84791 0.81305 1.90703 1.37085 1.28088 1.82475 1.23514 1.03705 1.02459 1.00076 1.85427 1.67096 1.40216 0.90585 1.22897 1.36440 1.15892 0.93113 0.90927 1.24994 0.95263 0.95975 0.97365 1.70026 1.37359 1.29236 1.13577 0.86120 0.79073 0.80194 0.80118 1.19650 1.20572 1.20545 0.90440 0.91264 0.93603 0.83130 0.86544 0.92048 0.73432 0.89827 0.90300 0.90271 0.91172 0.89402 0.89480 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.26 37.16 0.31 -1.60 16 2 C 0.15 1.66 3.48 -66.95 -0.23 1.43 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.08 0.54 3.15 -65.88 -0.21 0.34 16 5 H 0.10 0.52 7.82 -51.93 -0.41 0.12 16 6 N -0.66 -3.87 4.76 -106.05 -0.50 -4.37 16 7 C 0.14 0.53 6.17 -4.97 -0.03 0.50 16 8 C 0.31 2.05 7.74 -155.72 -1.21 0.85 16 9 N -0.52 -5.27 11.21 -12.10 -0.14 -5.40 16 10 C 0.40 4.04 9.46 -91.24 -0.86 3.18 16 11 O -0.44 -3.64 13.66 -19.32 -0.26 -3.91 16 12 N -0.31 -2.89 12.81 29.18 0.37 -2.52 16 13 N -0.47 -2.71 7.44 32.62 0.24 -2.47 16 14 H 0.44 0.94 8.96 -182.34 -1.63 -0.70 16 15 C -0.16 -0.90 6.67 -24.58 -0.16 -1.07 16 16 C 0.10 0.94 6.69 -2.53 -0.02 0.92 16 17 N -0.63 -8.37 3.08 -163.02 -0.50 -8.88 16 18 C 0.55 10.33 7.65 -10.98 -0.08 10.24 16 19 O -0.51 -11.61 14.77 5.56 0.08 -11.53 16 20 C -0.15 -2.96 5.16 36.01 0.19 -2.77 16 21 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 22 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 23 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 24 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 25 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 26 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H 0.08 0.90 7.40 -51.93 -0.38 0.52 16 31 H 0.07 1.12 6.76 -51.93 -0.35 0.76 16 32 H 0.04 0.54 7.98 -51.93 -0.41 0.12 16 33 H 0.35 1.93 7.74 -39.29 -0.30 1.62 16 34 H 0.12 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 36 H 0.41 1.04 9.06 45.56 0.41 1.45 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.44 7.77 -51.93 -0.40 0.04 16 39 H 0.08 0.73 7.48 -51.93 -0.39 0.35 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 42 H 0.09 1.62 7.85 -51.92 -0.41 1.22 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -39.24 375.55 -10.02 -49.26 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.36 Total: -2.04 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.11 Total: -0.86 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.21 Total: -48.98 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.18 Total: -15.44 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.24 -10.02 -49.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.877 kcal (2) G-P(sol) polarization free energy of solvation -39.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds