Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00243 * 2 1 4 4 C 1.50701 * 109.46921 * 293.95400 * 3 2 1 5 5 N 1.30889 * 125.91290 * 275.02322 * 4 3 2 6 6 C 1.33542 * 109.78041 * 179.97438 * 5 4 3 7 7 O 1.35867 * 125.58916 * 179.97438 * 6 5 4 8 8 N 1.31072 * 108.82493 * 0.02562 * 6 5 4 9 9 N 1.34354 * 125.90946 * 94.71298 * 4 3 2 10 10 H 0.96998 * 126.77566 * 0.02562 * 9 4 3 11 11 C 1.46906 * 111.00136 * 123.95472 * 2 1 3 12 12 H 1.09004 * 110.88775 * 295.34210 * 11 2 1 13 13 C 1.55156 * 111.00550 * 59.22466 * 11 2 1 14 14 C 1.54365 * 102.92264 * 153.54733 * 13 11 2 15 15 N 1.47025 * 107.28673 * 337.86458 * 14 13 11 16 16 C 1.34780 * 125.64656 * 178.87729 * 15 14 13 17 17 O 1.21279 * 119.99967 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00174 * 0.02940 * 16 15 14 19 19 S 1.81003 * 109.47229 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00028 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99824 * 359.97438 * 20 19 18 22 22 C 1.38790 * 119.99988 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00413 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 120.00261 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46831 * 89.99369 * 24 22 20 26 26 H 1.48495 * 109.47381 * 209.99949 * 24 22 20 27 27 H 1.48504 * 109.46549 * 330.00035 * 24 22 20 28 28 C 1.47419 * 108.70439 * 358.90440 * 15 14 13 29 29 H 1.08999 * 109.47439 * 60.00146 * 1 2 3 30 30 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46808 * 299.99830 * 1 2 3 32 32 H 1.09002 * 109.47401 * 173.95428 * 3 2 1 33 33 H 1.09001 * 109.46874 * 53.95440 * 3 2 1 34 34 H 0.96699 * 113.99634 * 90.00289 * 7 6 5 35 35 H 1.08998 * 110.71602 * 271.93987 * 13 11 2 36 36 H 1.08999 * 110.71841 * 35.20970 * 13 11 2 37 37 H 1.08997 * 109.90677 * 218.42422 * 14 13 11 38 38 H 1.09001 * 109.97373 * 97.33995 * 14 13 11 39 39 H 1.08993 * 109.47267 * 300.00719 * 18 16 15 40 40 H 1.09000 * 109.46717 * 60.00491 * 18 16 15 41 41 H 0.96996 * 120.00606 * 180.02562 * 23 22 20 42 42 H 1.09005 * 110.36711 * 265.29691 * 28 15 14 43 43 H 1.09000 * 110.46060 * 143.01874 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 7 2.3121 1.9682 -2.4170 6 6 1.7064 2.6910 -3.3625 7 8 2.1339 2.8336 -4.6442 8 7 0.6323 3.2413 -2.8510 9 7 0.5657 2.8300 -1.5099 10 1 -0.1175 3.0664 -0.8632 11 6 1.9954 -0.7660 1.1376 12 1 1.7278 -0.2925 2.0822 13 6 1.5028 -2.2367 1.0935 14 6 2.6122 -2.9952 1.8531 15 7 3.8248 -2.1656 1.7984 16 6 5.0099 -2.4685 2.3644 17 8 5.9466 -1.7060 2.2551 18 6 5.1710 -3.7547 3.1330 19 16 6.8626 -3.8713 3.7663 20 6 6.7722 -5.4227 4.5967 21 1 5.8483 -5.9820 4.5970 22 6 7.8880 -5.9254 5.2514 23 7 9.0140 -5.2435 5.2516 24 14 7.7920 -7.5698 6.1325 25 1 8.1616 -8.6577 5.1916 26 1 8.7306 -7.5704 7.2832 27 1 6.4074 -7.7885 6.6228 28 6 3.5296 -0.9473 1.0226 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.0797 1.3444 0.1082 33 1 1.5611 1.9273 0.8309 34 1 1.7836 2.1680 -5.2519 35 1 0.5457 -2.3382 1.6050 36 1 1.4306 -2.5884 0.0644 37 1 2.7988 -3.9566 1.3746 38 1 2.3148 -3.1491 2.8904 39 1 4.4693 -3.7701 3.9669 40 1 4.9705 -4.5994 2.4738 41 1 9.7939 -5.5950 5.7088 42 1 3.8185 -1.0821 -0.0198 43 1 4.0463 -0.0884 1.4508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188958188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = 4.848069 kcal Electronic energy + Delta-G solvation = -26497.881148 eV Core-core repulsion = 22513.082640 eV Total energy + Delta-G solvation = -3984.798509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.34338 -41.13509 -39.37031 -38.49079 -36.98176 -34.57411 -33.45360 -33.02450 -31.81691 -30.88054 -29.39935 -28.52937 -27.65047 -25.33188 -24.17637 -23.56891 -22.05204 -21.22476 -20.66377 -19.69327 -19.54276 -18.69282 -18.12281 -17.78508 -17.20776 -16.87138 -16.64727 -16.37105 -16.27290 -15.85961 -15.52626 -15.22681 -14.94586 -14.60919 -14.35813 -14.30914 -14.02220 -13.74883 -13.49294 -13.28963 -13.21590 -13.14033 -12.88093 -12.87392 -12.71314 -12.58183 -12.30301 -11.94123 -11.83640 -11.71416 -11.25599 -11.13153 -11.04207 -10.96299 -10.71939 -10.26432 -9.68363 -9.45515 -8.66690 -8.33326 -6.11998 0.29599 1.24704 1.33115 1.43796 1.45108 1.51650 1.57547 1.58501 2.07035 2.28495 2.34603 2.90370 3.00739 3.21069 3.34771 3.44179 3.65454 3.73226 3.89594 4.08800 4.23070 4.23597 4.27189 4.36604 4.42764 4.47286 4.56059 4.64928 4.70214 4.84496 4.89862 4.90880 4.95873 5.00269 5.06009 5.19963 5.34950 5.42896 5.80789 5.92999 6.02318 6.20996 6.40048 6.49418 6.88479 7.07686 7.13107 8.75888 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.001868 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.892795 B =14983.163343 C =15603.862258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.125 3.875 4 C 0.323 3.677 5 N -0.566 5.566 6 C 0.393 3.607 7 O -0.452 6.452 8 N -0.329 5.329 9 N -0.450 5.450 10 H 0.460 0.540 11 C 0.086 3.914 12 H 0.083 0.917 13 C -0.108 4.108 14 C 0.091 3.909 15 N -0.616 5.616 16 C 0.546 3.454 17 O -0.568 6.568 18 C -0.118 4.118 19 S -0.154 6.154 20 C -0.544 4.544 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.256 1.256 28 C 0.109 3.891 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.428 0.572 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.271 0.729 42 H 0.068 0.932 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.040 11.191 -11.273 32.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.260 5.260 3 C -0.005 4.005 4 C 0.043 3.957 5 N -0.304 5.304 6 C 0.073 3.927 7 O -0.255 6.255 8 N -0.172 5.172 9 N -0.175 5.175 10 H 0.311 0.689 11 C -0.022 4.022 12 H 0.101 0.899 13 C -0.145 4.145 14 C -0.031 4.031 15 N -0.351 5.351 16 C 0.334 3.666 17 O -0.446 6.446 18 C -0.269 4.269 19 S 0.073 5.927 20 C -0.692 4.692 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.180 1.180 28 C -0.014 4.014 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.289 0.711 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.065 12.831 -12.244 31.527 hybrid contribution -1.105 -1.440 1.197 2.174 sum -27.170 11.391 -11.047 31.464 Atomic orbital electron populations 1.22589 0.84790 1.04347 1.01375 1.61719 1.09718 1.11365 1.43173 1.20787 1.03234 0.88665 0.87792 1.24127 0.84580 0.91019 0.95946 1.70308 1.33578 1.26051 1.00490 1.21390 0.88856 0.93843 0.88578 1.84861 1.71472 1.56943 1.12249 1.78140 1.20685 1.26500 0.91912 1.47718 1.22685 1.37854 1.09196 0.68926 1.22675 0.91925 0.95250 0.92400 0.89911 1.22716 0.98008 0.91654 1.02170 1.22385 0.83330 0.95029 1.02381 1.48322 1.10674 1.23049 1.53079 1.19775 0.81403 0.86914 0.78496 1.90695 1.40390 1.52090 1.61444 1.23289 1.02875 0.98032 1.02744 1.85626 1.10106 1.28842 1.68082 1.23189 1.01172 1.05929 1.38905 0.89787 1.26152 0.93919 1.02576 0.96626 1.70189 1.02294 1.40008 1.42327 0.84939 0.78869 0.76562 0.77516 1.19380 1.20363 1.17989 1.22267 0.96118 0.87095 0.95901 0.92189 0.89262 0.92600 0.87574 0.88002 0.71081 0.86635 0.89166 0.90515 0.89733 0.87253 0.87631 0.92015 0.91381 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.17 127.69 1.17 1.25 16 2 N -0.53 -5.27 4.65 -893.43 -4.16 -9.43 16 3 C 0.13 1.26 5.48 85.56 0.47 1.72 16 4 C 0.32 4.73 6.74 138.23 0.93 5.66 16 5 N -0.57 -12.57 11.21 -304.30 -3.41 -15.98 16 6 C 0.39 8.34 9.46 180.57 1.71 10.05 16 7 O -0.45 -8.16 13.66 -92.06 -1.26 -9.42 16 8 N -0.33 -6.17 12.81 -174.94 -2.24 -8.41 16 9 N -0.45 -5.12 6.99 -50.72 -0.35 -5.48 16 10 H 0.46 1.47 8.96 -213.10 -1.91 -0.44 16 11 C 0.09 0.97 2.71 46.31 0.13 1.10 16 12 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 13 C -0.11 -0.98 5.21 31.80 0.17 -0.82 16 14 C 0.09 1.47 6.49 86.74 0.56 2.03 16 15 N -0.62 -16.15 3.33 -811.72 -2.70 -18.85 16 16 C 0.55 20.81 7.87 87.66 0.69 21.50 16 17 O -0.57 -27.19 16.12 -3.03 -0.05 -27.24 16 18 C -0.12 -4.73 5.35 71.24 0.38 -4.35 16 19 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 20 C -0.54 -30.95 9.50 67.95 0.65 -30.30 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.68 5.49 84.85 0.47 1.14 16 23 N -0.91 -56.10 13.22 21.65 0.29 -55.82 16 24 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 28 C 0.11 2.34 5.47 86.86 0.47 2.82 16 29 H 0.06 0.36 6.93 -2.39 -0.02 0.34 16 30 H 0.09 0.31 6.92 -2.39 -0.02 0.29 16 31 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 32 H 0.11 1.44 6.80 -2.39 -0.02 1.43 16 33 H 0.10 0.31 8.12 -2.39 -0.02 0.30 16 34 H 0.43 3.03 9.06 -74.06 -0.67 2.36 16 35 H 0.12 0.39 8.01 -2.39 -0.02 0.37 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 40 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.06 1.56 7.68 -2.39 -0.02 1.55 16 Total: -1.00 -89.12 376.11 -6.74 -95.86 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -1.52 Total: 7.42 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 7.79 Total: 11.80 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -12.58 Total: -113.96 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.31 Total: -36.66 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -89.12 -6.74 -95.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.708 kcal (2) G-P(sol) polarization free energy of solvation -89.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds