Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40445 * 126.82493 * 2 1 4 4 C 1.30707 * 106.79252 * 179.74103 * 3 2 1 5 5 N 1.33236 * 108.95130 * 0.02562 * 4 3 2 6 6 C 1.30839 * 109.82829 * 359.97438 * 5 4 3 7 7 C 1.50696 * 125.96132 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47250 * 269.97773 * 7 6 5 9 9 C 1.47901 * 111.00008 * 69.87677 * 8 7 6 10 10 C 1.53996 * 107.05950 * 214.15758 * 9 8 7 11 11 H 1.08991 * 110.30993 * 120.13807 * 10 9 8 12 12 O 1.42903 * 110.30916 * 242.21310 * 10 9 8 13 13 C 1.54600 * 105.13714 * 1.22114 * 10 9 8 14 14 H 1.09000 * 110.72603 * 263.59871 * 13 10 9 15 15 N 1.46498 * 110.72278 * 140.49491 * 13 10 9 16 16 C 1.34773 * 120.00141 * 154.99803 * 15 13 10 17 17 O 1.21281 * 120.00265 * 0.02562 * 16 15 13 18 18 C 1.50705 * 120.00280 * 179.97438 * 16 15 13 19 19 S 1.80997 * 109.47148 * 180.02562 * 18 16 15 20 20 C 1.76209 * 99.99896 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99618 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99755 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00518 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99458 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47098 * 60.00613 * 24 22 20 26 26 H 1.48506 * 109.46688 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47380 * 299.99760 * 24 22 20 28 28 C 1.48532 * 111.00319 * 312.47976 * 8 7 6 29 29 H 1.08995 * 109.47448 * 90.02439 * 1 2 3 30 30 H 1.09003 * 109.46707 * 210.02302 * 1 2 3 31 31 H 1.09001 * 109.46877 * 330.01772 * 1 2 3 32 32 H 1.08005 * 125.52367 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47357 * 29.98139 * 7 6 5 34 34 H 1.09002 * 109.47028 * 149.97812 * 7 6 5 35 35 H 1.08999 * 109.91583 * 333.50768 * 9 8 7 36 36 H 1.08997 * 109.91789 * 94.80543 * 9 8 7 37 37 H 0.96704 * 113.99327 * 298.53848 * 12 10 9 38 38 H 0.97006 * 120.00335 * 335.00314 * 15 13 10 39 39 H 1.08998 * 109.47150 * 300.00453 * 18 16 15 40 40 H 1.08999 * 109.46806 * 60.00237 * 18 16 15 41 41 H 0.96995 * 120.00617 * 180.02562 * 23 22 20 42 42 H 1.09001 * 110.66808 * 278.15895 * 28 8 7 43 43 H 1.09010 * 110.66375 * 41.28054 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5348 0.6765 0.0057 5 7 3.5096 -0.6556 0.0086 6 6 2.2706 -1.0761 0.0055 7 6 1.8247 -2.5156 0.0078 8 7 1.6840 -2.9869 -1.3764 9 6 3.0047 -3.1133 -2.0300 10 6 2.8113 -2.7482 -3.5135 11 1 3.4360 -1.8949 -3.7777 12 8 3.1247 -3.8675 -4.3447 13 6 1.3157 -2.3801 -3.6471 14 1 0.7383 -3.2344 -4.0005 15 7 1.1420 -1.2334 -4.5421 16 6 -0.0256 -1.0562 -5.1914 17 8 -0.9327 -1.8458 -5.0345 18 6 -0.2046 0.1237 -6.1117 19 16 -1.8666 0.0841 -6.8273 20 6 -1.8024 1.5315 -7.8302 21 1 -0.9048 2.1315 -7.8556 22 6 -2.9059 1.9010 -8.5867 23 7 -4.0004 1.1706 -8.5547 24 14 -2.8381 3.4359 -9.6494 25 1 -1.7479 3.2985 -10.6484 26 1 -4.1345 3.6085 -10.3528 27 1 -2.5778 4.6203 -8.7923 28 6 0.9185 -2.0126 -2.1953 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5136 32 1 4.4255 1.2874 0.0068 33 1 2.5656 -3.1247 0.5255 34 1 0.8654 -2.5979 0.5189 35 1 3.7147 -2.4271 -1.5683 36 1 3.3651 -4.1383 -1.9439 37 1 4.0403 -4.1694 -4.2692 38 1 1.8674 -0.6016 -4.6674 39 1 -0.0740 1.0474 -5.5478 40 1 0.5363 0.0776 -6.9099 41 1 -4.7714 1.4286 -9.0836 42 1 -0.1534 -2.1421 -2.0453 43 1 1.2202 -0.9917 -1.9605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191162480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = 31.406638 kcal Electronic energy + Delta-G solvation = -27734.402463 eV Core-core repulsion = 23750.755621 eV Total energy + Delta-G solvation = -3983.646843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.66936 -40.18867 -38.62296 -36.51282 -34.55198 -34.39071 -32.44994 -32.24886 -30.44012 -29.15726 -28.25626 -27.56356 -25.91383 -25.45244 -22.45695 -22.42500 -21.28786 -20.58298 -20.34352 -17.98533 -17.59262 -17.49880 -17.32139 -16.44392 -16.09546 -15.53983 -15.32189 -15.01269 -14.94764 -14.81939 -14.62222 -14.03980 -13.91437 -13.83571 -13.58983 -13.54524 -13.17585 -12.95739 -12.63889 -12.57422 -12.45804 -12.13620 -11.87808 -11.73761 -11.07202 -11.05296 -10.97116 -10.78663 -10.51755 -10.39342 -10.10352 -9.97421 -9.84899 -9.48882 -9.14452 -9.08714 -9.02930 -8.27520 -6.52659 -6.23486 -3.94504 1.18137 1.91918 2.52361 2.86921 2.98445 3.22300 3.23451 3.27560 3.41843 3.59606 3.68708 3.83838 4.08949 4.18498 4.24397 4.34671 4.38767 4.62381 4.68869 4.76145 4.89196 5.01634 5.05483 5.11090 5.11481 5.11823 5.15032 5.25792 5.49477 5.54797 5.56488 5.82129 5.84720 5.87106 6.06623 6.09320 6.16763 6.31369 6.35097 6.53268 7.33052 7.56528 7.58373 7.69727 8.33074 8.51382 9.21750 10.83874 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.002745 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.083964 B =10198.532864 C =11175.744130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.369 5.369 3 N -0.314 5.314 4 C 0.195 3.805 5 N -0.538 5.538 6 C 0.240 3.760 7 C 0.120 3.880 8 N -0.488 5.488 9 C -0.004 4.004 10 C 0.090 3.910 11 H 0.066 0.934 12 O -0.551 6.551 13 C 0.154 3.846 14 H 0.118 0.882 15 N -0.731 5.731 16 C 0.535 3.465 17 O -0.511 6.511 18 C -0.154 4.154 19 S -0.056 6.056 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 C 0.012 3.988 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.217 0.783 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.379 0.621 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.100 0.900 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.740 -6.310 19.585 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.160 5.160 3 N -0.142 5.142 4 C -0.108 4.108 5 N -0.267 5.267 6 C -0.038 4.038 7 C -0.011 4.011 8 N -0.211 5.211 9 C -0.133 4.133 10 C 0.030 3.970 11 H 0.084 0.916 12 O -0.356 6.356 13 C 0.047 3.953 14 H 0.136 0.864 15 N -0.385 5.385 16 C 0.322 3.678 17 O -0.384 6.384 18 C -0.304 4.304 19 S 0.170 5.830 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.117 4.117 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.234 0.766 33 H 0.133 0.867 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.227 0.773 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.110 -7.547 19.619 25.317 hybrid contribution 2.379 3.055 -0.698 3.934 sum 16.489 -4.492 18.921 25.497 Atomic orbital electron populations 1.22175 0.73314 1.05244 1.04887 1.50406 1.08229 1.03901 1.53440 1.78124 1.02103 1.08283 1.25677 1.26000 0.95876 0.90425 0.98519 1.70494 1.19475 1.11623 1.25109 1.25407 0.86706 0.94033 0.97630 1.21272 1.03342 0.83690 0.92805 1.65087 1.13762 1.41810 1.00419 1.23846 0.91655 1.03685 0.94103 1.22840 0.96039 0.89075 0.89073 0.91632 1.86631 1.34034 1.49024 1.65870 1.21602 0.94356 0.90730 0.88621 0.86389 1.45971 1.16827 1.28190 1.47522 1.20351 0.81400 0.86536 0.79539 1.90711 1.40139 1.44805 1.62771 1.23538 1.08175 0.97915 1.00808 1.85380 1.06281 1.35908 1.55427 1.22829 1.02900 1.11607 1.31227 0.90996 1.24981 0.94500 0.97612 0.96394 1.69998 1.03171 1.37830 1.39263 0.86229 0.77603 0.81792 0.79911 1.19913 1.20772 1.19940 1.23989 1.00476 0.94519 0.92742 0.89289 0.88638 0.88490 0.76646 0.86709 0.87780 0.90519 0.88631 0.77298 0.76900 0.89309 0.89135 0.92089 0.88171 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 10.21 59.85 0.61 1.21 16 2 N -0.37 -3.56 3.24 -65.10 -0.21 -3.77 16 3 N -0.31 -3.57 12.70 29.29 0.37 -3.19 16 4 C 0.19 1.91 13.03 -91.82 -1.20 0.71 16 5 N -0.54 -5.45 10.10 -11.97 -0.12 -5.57 16 6 C 0.24 2.19 5.26 -155.69 -0.82 1.37 16 7 C 0.12 0.83 5.81 -4.98 -0.03 0.80 16 8 N -0.49 -4.24 5.54 -231.90 -1.28 -5.52 16 9 C 0.00 -0.04 6.27 -2.75 -0.02 -0.05 16 10 C 0.09 0.87 4.09 -25.37 -0.10 0.77 16 11 H 0.07 0.59 7.75 -51.93 -0.40 0.18 16 12 O -0.55 -5.56 13.26 -35.23 -0.47 -6.03 16 13 C 0.15 1.92 3.16 -66.07 -0.21 1.71 16 14 H 0.12 1.85 7.49 -51.93 -0.39 1.46 16 15 N -0.73 -10.02 5.18 -52.01 -0.27 -10.29 16 16 C 0.54 9.91 7.85 -10.98 -0.09 9.83 16 17 O -0.51 -11.36 15.51 5.56 0.09 -11.28 16 18 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 19 S -0.06 -1.52 20.57 -107.50 -2.21 -3.74 16 20 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 24 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 C 0.01 0.12 4.82 -1.90 -0.01 0.12 16 29 H 0.09 0.71 7.09 -51.93 -0.37 0.34 16 30 H 0.10 0.42 7.10 -51.93 -0.37 0.05 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.22 1.36 8.06 -52.48 -0.42 0.93 16 33 H 0.11 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.10 0.53 7.12 -51.93 -0.37 0.16 16 35 H 0.08 0.65 6.20 -51.93 -0.32 0.33 16 36 H 0.10 0.68 7.96 -51.93 -0.41 0.27 16 37 H 0.38 1.97 9.11 45.56 0.41 2.39 16 38 H 0.40 4.49 8.39 -40.82 -0.34 4.15 16 39 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 43 H 0.06 0.62 4.57 -51.92 -0.24 0.38 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -37.72 369.43 -9.14 -46.86 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.88 Total: 5.32 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.44 Total: 0.62 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.78 Total: -53.68 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.38 Total: -17.30 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.72 -9.14 -46.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191162480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.265 kcal (2) G-P(sol) polarization free energy of solvation -37.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds