Wall clock time and date at job start Sat Apr 11 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35628 * 125.67676 * 2 1 4 4 C 1.35517 * 108.85105 * 180.02562 * 3 2 1 5 5 Cl 1.73609 * 126.07422 * 179.97438 * 4 3 2 6 6 C 1.39894 * 107.85302 * 359.77295 * 4 3 2 7 7 C 1.37641 * 125.67674 * 180.02562 * 2 1 3 8 8 C 1.46671 * 126.22045 * 359.93180 * 7 2 1 9 9 O 1.21696 * 119.99896 * 24.64194 * 8 7 2 10 10 N 1.34771 * 119.99978 * 204.63311 * 8 7 2 11 11 C 1.47515 * 118.75918 * 359.16561 * 10 8 7 12 12 C 1.53567 * 111.03311 * 138.34144 * 11 10 8 13 13 C 1.51530 * 109.57883 * 320.02328 * 12 11 10 14 14 O 1.42156 * 108.75356 * 91.40084 * 13 12 11 15 15 C 1.38012 * 119.44279 * 272.76818 * 14 13 12 16 16 H 1.09008 * 109.46511 * 303.42705 * 15 14 13 17 17 C 1.53001 * 109.46932 * 183.43407 * 15 14 13 18 18 N 1.46497 * 109.47257 * 64.99063 * 17 15 14 19 19 C 1.36933 * 119.99840 * 179.72609 * 18 17 15 20 20 H 1.08002 * 120.00116 * 0.26834 * 19 18 17 21 21 C 1.38819 * 120.00119 * 180.27384 * 19 18 17 22 22 N 1.31616 * 119.99848 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99982 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47385 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47157 * 120.00147 * 23 21 19 26 26 H 1.48497 * 109.47218 * 240.00087 * 23 21 19 27 27 C 1.45126 * 118.75958 * 179.13983 * 10 8 7 28 28 H 1.09001 * 109.46903 * 264.43005 * 1 2 3 29 29 H 1.08999 * 109.46691 * 24.43083 * 1 2 3 30 30 H 1.08997 * 109.46867 * 144.42963 * 1 2 3 31 31 H 1.07995 * 125.57413 * 0.02562 * 3 2 1 32 32 H 1.08000 * 126.44980 * 180.22809 * 6 4 3 33 33 H 1.09009 * 109.16272 * 258.74261 * 11 10 8 34 34 H 1.08999 * 109.16387 * 17.93945 * 11 10 8 35 35 H 1.09002 * 109.45325 * 80.05917 * 12 11 10 36 36 H 1.09001 * 109.45027 * 199.98961 * 12 11 10 37 37 H 1.09004 * 109.58799 * 211.18155 * 13 12 11 38 38 H 1.08993 * 109.59319 * 331.61853 * 13 12 11 39 39 H 1.09000 * 109.46722 * 304.98503 * 17 15 14 40 40 H 1.09006 * 109.46872 * 184.98912 * 17 15 14 41 41 H 0.96999 * 120.00517 * 359.97438 * 18 17 15 42 42 H 0.96996 * 119.99934 * 179.97438 * 22 21 19 43 43 H 1.09003 * 109.46197 * 149.29127 * 27 10 8 44 44 H 1.08995 * 109.46057 * 29.32657 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5532 0.7095 -0.0006 5 17 4.9379 1.7567 -0.0014 6 6 3.5783 -0.6892 0.0043 7 6 2.2678 -1.1181 -0.0005 8 6 1.8120 -2.5122 0.0003 9 8 0.7120 -2.7930 -0.4380 10 7 2.6115 -3.4822 0.4862 11 6 3.9468 -3.1137 0.9934 12 6 4.2716 -3.8690 2.2904 13 6 3.0333 -3.9386 3.1611 14 8 2.3286 -5.1356 2.8585 15 6 1.4069 -5.1389 1.8313 16 1 0.6564 -4.3698 2.0142 17 6 0.7273 -6.5079 1.7605 18 7 -0.0516 -6.7302 2.9811 19 6 -0.7559 -7.8936 3.1415 20 1 -0.7336 -8.6490 2.3700 21 6 -1.4986 -8.1019 4.2957 22 7 -1.5254 -7.1814 5.2360 23 14 -2.4599 -9.6885 4.5141 24 1 -2.2662 -10.5528 3.3221 25 1 -1.9750 -10.3984 5.7249 26 1 -3.9033 -9.3756 4.6686 27 6 2.1261 -4.8499 0.4913 28 1 -0.3633 -0.0997 1.0228 29 1 -0.3633 0.9357 -0.4250 30 1 -0.3633 -0.8359 -0.5978 31 1 1.9089 2.1244 0.0004 32 1 4.4584 -1.3152 0.0087 33 1 4.6957 -3.3579 0.2399 34 1 3.9724 -2.0414 1.1877 35 1 4.6030 -4.8790 2.0491 36 1 5.0634 -3.3458 2.8266 37 1 3.3248 -3.9416 4.2114 38 1 2.3956 -3.0781 2.9591 39 1 1.4855 -7.2854 1.6665 40 1 0.0646 -6.5402 0.8956 41 1 -0.0714 -6.0519 3.6742 42 1 -2.0446 -7.3268 6.0423 43 1 2.9667 -5.5341 0.3755 44 1 1.4275 -4.9903 -0.3334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200930406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:21 Heat of formation + Delta-G solvation = 8.345900 kcal Electronic energy + Delta-G solvation = -28214.428970 eV Core-core repulsion = 24195.445681 eV Total energy + Delta-G solvation = -4018.983289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01593 -40.18763 -38.30923 -36.71122 -35.90872 -34.61833 -33.10566 -32.85986 -30.92569 -30.37556 -28.46642 -27.10504 -26.39514 -25.31683 -23.33720 -22.17136 -21.26034 -21.11065 -20.87654 -19.47990 -17.62516 -17.15834 -16.69601 -16.44183 -16.32065 -16.11193 -15.40736 -14.96250 -14.78960 -14.41901 -14.38009 -13.94970 -13.77732 -13.74167 -13.29867 -13.18015 -13.08057 -12.90661 -12.65599 -12.54811 -12.24013 -11.96701 -11.76811 -11.60995 -11.32569 -11.07458 -10.93263 -10.78830 -10.76373 -10.25013 -10.10270 -9.93850 -9.67347 -9.41349 -8.97865 -8.82921 -8.70088 -8.50708 -6.84057 -5.68997 -2.97075 1.11203 1.76618 2.08360 2.37132 2.97602 3.04629 3.47933 3.53064 3.55644 3.96502 4.16815 4.46006 4.53846 4.59693 4.65776 4.76917 4.82991 4.95090 5.01053 5.16081 5.20800 5.24602 5.33264 5.37785 5.47021 5.52071 5.55914 5.60388 5.64728 5.84002 5.95515 5.99937 6.05425 6.11175 6.33679 6.38122 6.46257 6.64739 6.66305 6.79190 7.09656 7.75899 7.93633 8.01308 8.49262 9.60833 10.19082 10.54863 11.54073 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020198 B = 0.002562 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.913745 B =10925.663263 C =11481.337631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.401 5.401 3 C 0.031 3.969 4 C -0.123 4.123 5 Cl -0.050 7.050 6 C -0.146 4.146 7 C -0.027 4.027 8 C 0.580 3.420 9 O -0.535 6.535 10 N -0.591 5.591 11 C 0.074 3.926 12 C -0.167 4.167 13 C 0.074 3.926 14 O -0.368 6.368 15 C 0.090 3.910 16 H 0.051 0.949 17 C 0.166 3.834 18 N -0.726 5.726 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.082 3.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.178 0.822 32 H 0.167 0.833 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.028 0.972 40 H 0.035 0.965 41 H 0.386 0.614 42 H 0.253 0.747 43 H 0.087 0.913 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.995 19.855 -11.777 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.074 5.074 3 C -0.106 4.106 4 C -0.156 4.156 5 Cl -0.022 7.022 6 C -0.172 4.172 7 C -0.142 4.142 8 C 0.368 3.632 9 O -0.414 6.414 10 N -0.323 5.323 11 C -0.048 4.048 12 C -0.205 4.205 13 C -0.003 4.003 14 O -0.286 6.286 15 C 0.030 3.970 16 H 0.069 0.931 17 C 0.038 3.962 18 N -0.370 5.370 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.220 1.220 27 C -0.042 4.042 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.195 0.805 32 H 0.184 0.816 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.220 0.780 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.095 19.402 -11.948 26.281 hybrid contribution -0.340 -0.116 0.270 0.450 sum 12.755 19.286 -11.678 25.904 Atomic orbital electron populations 1.22425 0.74880 1.05710 1.04914 1.43816 1.07261 1.04458 1.51827 1.21743 0.88967 0.92206 1.07682 1.19928 0.88027 0.91367 1.16280 1.98330 1.40588 1.65548 1.97688 1.21648 0.95697 0.93157 1.06664 1.20056 0.89727 0.88124 1.16303 1.17039 0.84406 0.83419 0.78314 1.90832 1.20450 1.82964 1.47114 1.47596 1.16523 1.07513 1.60627 1.23005 0.83054 1.02486 0.96233 1.22511 0.99794 1.02253 0.95919 1.22108 0.91598 0.87816 0.98771 1.86439 1.55252 1.34121 1.52784 1.22266 0.89536 0.99940 0.85292 0.93134 1.20610 0.93059 0.91013 0.91522 1.42232 1.56252 1.20815 1.17734 1.19279 1.20845 0.94897 1.01662 0.91106 1.24741 1.01181 0.98295 0.96929 1.69686 1.45564 1.34025 1.08873 0.86108 0.79586 0.83002 0.77459 1.20560 1.21913 1.21965 1.22511 1.00366 0.80642 1.00632 0.89968 0.89199 0.87340 0.80470 0.81565 0.91051 0.86992 0.89989 0.89523 0.89232 0.93640 0.95402 0.94753 0.77974 0.93675 0.89456 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.73 59.85 0.64 1.15 16 2 N -0.40 -4.00 3.16 -120.19 -0.38 -4.38 16 3 C 0.03 0.26 11.35 -16.85 -0.19 0.07 16 4 C -0.12 -1.13 6.66 -39.93 -0.27 -1.39 16 5 Cl -0.05 -0.41 29.30 -51.86 -1.52 -1.93 16 6 C -0.15 -1.40 8.41 -39.09 -0.33 -1.72 16 7 C -0.03 -0.32 6.49 -81.98 -0.53 -0.85 16 8 C 0.58 8.00 7.50 -12.86 -0.10 7.90 16 9 O -0.54 -8.97 14.46 5.19 0.08 -8.89 16 10 N -0.59 -7.37 2.19 -174.01 -0.38 -7.75 16 11 C 0.07 0.68 4.70 -3.19 -0.02 0.66 16 12 C -0.17 -1.63 5.78 -27.18 -0.16 -1.78 16 13 C 0.07 0.99 6.37 36.41 0.23 1.22 16 14 O -0.37 -6.55 9.38 -26.53 -0.25 -6.80 16 15 C 0.09 1.60 2.68 -25.78 -0.07 1.53 16 16 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 17 C 0.17 3.53 5.92 -4.04 -0.02 3.51 16 18 N -0.73 -19.45 5.54 -59.91 -0.33 -19.78 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 23 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 C 0.08 1.16 4.87 -3.83 -0.02 1.14 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.11 1.12 6.43 -51.93 -0.33 0.79 16 31 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.17 1.28 5.49 -52.49 -0.29 0.99 16 33 H 0.07 0.53 7.97 -51.92 -0.41 0.11 16 34 H 0.11 0.95 3.82 -51.93 -0.20 0.75 16 35 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.63 7.40 -51.93 -0.38 0.24 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.39 11.04 7.65 -40.82 -0.31 10.72 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 44 H 0.10 1.43 7.26 -51.93 -0.38 1.06 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -34.93 368.25 -8.68 -43.61 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.07 Total: 6.94 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.07 Total: 3.88 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.37 Total: -60.30 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.17 Total: -15.69 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.52 Total: -1.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.93 -8.68 -43.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200930406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.958 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds