Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35637 * 125.67453 * 2 1 4 4 C 1.35512 * 108.85086 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 126.07574 * 179.97438 * 4 3 2 6 6 C 1.39887 * 107.85528 * 359.97438 * 4 3 2 7 7 C 1.37641 * 125.67776 * 179.97438 * 2 1 3 8 8 C 1.46663 * 126.22121 * 0.04673 * 7 2 1 9 9 O 1.21693 * 119.99903 * 53.06385 * 8 7 2 10 10 N 1.34779 * 120.00015 * 233.06186 * 8 7 2 11 11 C 1.47506 * 118.75742 * 5.25734 * 10 8 7 12 12 C 1.53203 * 111.23774 * 221.51294 * 11 10 8 13 13 C 1.51535 * 109.43255 * 40.26374 * 12 11 10 14 14 O 1.42154 * 108.76166 * 268.50656 * 13 12 11 15 15 C 1.38021 * 119.43762 * 87.21700 * 14 13 12 16 16 H 1.09006 * 109.46381 * 56.57406 * 15 14 13 17 17 C 1.53001 * 109.46815 * 176.56724 * 15 14 13 18 18 N 1.46507 * 109.46897 * 300.01137 * 17 15 14 19 19 C 1.36937 * 119.99568 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00444 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99817 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99854 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99968 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47359 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47128 * 120.00278 * 23 21 19 26 26 H 1.48504 * 109.47379 * 240.00122 * 23 21 19 27 27 C 1.45125 * 118.75686 * 185.52518 * 10 8 7 28 28 H 1.09001 * 109.47604 * 95.17080 * 1 2 3 29 29 H 1.09006 * 109.46769 * 215.17261 * 1 2 3 30 30 H 1.09003 * 109.47019 * 335.16536 * 1 2 3 31 31 H 1.08002 * 125.57095 * 359.70365 * 3 2 1 32 32 H 1.08003 * 126.45828 * 180.02562 * 6 4 3 33 33 H 1.09003 * 109.16809 * 342.02780 * 11 10 8 34 34 H 1.08998 * 109.17061 * 101.22761 * 11 10 8 35 35 H 1.09001 * 109.60530 * 280.22574 * 12 11 10 36 36 H 1.08999 * 109.42882 * 160.19271 * 12 11 10 37 37 H 1.08994 * 109.58664 * 148.72505 * 13 12 11 38 38 H 1.08996 * 109.58772 * 28.29253 * 13 12 11 39 39 H 1.08989 * 109.47357 * 60.01097 * 17 15 14 40 40 H 1.09000 * 109.46988 * 180.02562 * 17 15 14 41 41 H 0.96996 * 119.99888 * 0.02562 * 18 17 15 42 42 H 0.96998 * 119.99997 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.45831 * 210.72269 * 27 10 8 44 44 H 1.09001 * 109.45835 * 330.68826 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1018 0.0000 4 6 3.5531 0.7096 0.0006 5 17 4.9377 1.7568 0.0002 6 6 3.5783 -0.6890 0.0015 7 6 2.2677 -1.1181 0.0005 8 6 1.8120 -2.5121 0.0002 9 8 1.0216 -2.8937 -0.8428 10 7 2.2688 -3.3706 0.9334 11 6 3.1331 -2.8535 2.0110 12 6 4.2923 -3.8123 2.3011 13 6 4.8277 -4.3654 0.9958 14 8 4.1452 -5.5764 0.6982 15 6 2.9547 -5.5305 0.0013 16 1 3.1085 -5.0150 -0.9467 17 6 2.4653 -6.9552 -0.2664 18 7 3.4669 -7.6751 -1.0570 19 6 3.2458 -8.9766 -1.4207 20 1 2.3333 -9.4726 -1.1245 21 6 4.1945 -9.6586 -2.1703 22 7 5.3069 -9.0543 -2.5309 23 14 3.8932 -11.4342 -2.6659 24 1 2.5778 -11.8788 -2.1393 25 1 3.8950 -11.5418 -4.1469 26 1 4.9671 -12.2936 -2.1059 27 6 1.8964 -4.7699 0.8367 28 1 -0.3634 -0.0926 -1.0235 29 1 -0.3633 -0.8401 0.5920 30 1 -0.3633 0.9327 0.4316 31 1 1.9087 2.1245 -0.0045 32 1 4.4583 -1.3151 0.0026 33 1 3.5358 -1.8853 1.7133 34 1 2.5402 -2.7300 2.9173 35 1 3.9403 -4.6331 2.9260 36 1 5.0859 -3.2751 2.8204 37 1 5.8953 -4.5620 1.0929 38 1 4.6579 -3.6443 0.1963 39 1 2.3116 -7.4708 0.6815 40 1 1.5254 -6.9191 -0.8172 41 1 4.2866 -7.2298 -1.3227 42 1 5.9700 -9.5309 -3.0543 43 1 1.8439 -5.2016 1.8361 44 1 0.9231 -4.8541 0.3532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200930413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = -4.006581 kcal Electronic energy + Delta-G solvation = -28185.926403 eV Core-core repulsion = 24166.407470 eV Total energy + Delta-G solvation = -4019.518932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95859 -40.20903 -38.33775 -36.67283 -35.75508 -34.58305 -33.19762 -32.86697 -30.91774 -30.30644 -28.46877 -26.91975 -26.61955 -25.25843 -23.32557 -22.09585 -21.27065 -21.18551 -20.77244 -19.25051 -17.99961 -17.11692 -16.81582 -16.50964 -16.32105 -15.74627 -15.61131 -15.06066 -14.69237 -14.39965 -14.25516 -14.16914 -13.64532 -13.52534 -13.34555 -13.19533 -13.05887 -13.00332 -12.79123 -12.58026 -12.30380 -12.01645 -11.82231 -11.63766 -11.32725 -11.11757 -10.96409 -10.79072 -10.76796 -10.29233 -10.15864 -9.93176 -9.65359 -9.40028 -8.99618 -8.80814 -8.70942 -8.45367 -6.81578 -5.66528 -2.94681 1.23372 1.74476 2.11921 2.36017 2.73850 2.99299 3.49600 3.54544 3.57221 3.97396 4.14134 4.33232 4.53164 4.61135 4.68351 4.74013 4.77060 4.89520 5.01778 5.04991 5.19825 5.22612 5.29980 5.37212 5.48727 5.56418 5.56669 5.61318 5.66573 5.84271 5.95601 5.99710 6.10354 6.12905 6.35793 6.38539 6.44544 6.62465 6.67077 6.79796 7.05680 7.77654 7.88288 8.01981 8.51713 9.63336 10.21796 10.57926 11.56418 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.002619 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.993054 B =10690.055362 C =11108.399239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.409 5.409 3 C 0.024 3.976 4 C -0.117 4.117 5 Cl -0.049 7.049 6 C -0.138 4.138 7 C -0.021 4.021 8 C 0.581 3.419 9 O -0.525 6.525 10 N -0.593 5.593 11 C 0.093 3.907 12 C -0.166 4.166 13 C 0.072 3.928 14 O -0.366 6.366 15 C 0.089 3.911 16 H 0.051 0.949 17 C 0.167 3.833 18 N -0.725 5.725 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.080 3.920 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.027 0.973 40 H 0.034 0.966 41 H 0.388 0.612 42 H 0.253 0.747 43 H 0.088 0.912 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 25.518 12.023 28.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.082 5.082 3 C -0.112 4.112 4 C -0.150 4.150 5 Cl -0.020 7.020 6 C -0.163 4.163 7 C -0.136 4.136 8 C 0.367 3.633 9 O -0.400 6.400 10 N -0.325 5.325 11 C -0.029 4.029 12 C -0.204 4.204 13 C -0.005 4.005 14 O -0.284 6.284 15 C 0.028 3.972 16 H 0.069 0.931 17 C 0.038 3.962 18 N -0.370 5.370 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.043 4.043 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.195 0.805 32 H 0.172 0.828 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.222 0.778 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.395 25.025 11.643 28.574 hybrid contribution 0.250 -0.305 -0.433 0.586 sum -7.145 24.720 11.211 28.067 Atomic orbital electron populations 1.22211 0.75373 1.04587 1.04728 1.43775 1.06872 1.04575 1.53026 1.21640 0.88881 0.92005 1.08650 1.19867 0.88049 0.91234 1.15812 1.98333 1.40599 1.65435 1.97655 1.21134 0.95094 0.93115 1.06989 1.20123 0.90102 0.87744 1.15635 1.17133 0.80973 0.83678 0.81507 1.90878 1.33827 1.78408 1.36933 1.47760 1.49755 1.08581 1.26443 1.22206 0.92022 0.98867 0.89769 1.22444 0.97889 1.00010 1.00089 1.22153 0.96680 0.87040 0.94590 1.86452 1.36130 1.30735 1.75065 1.22285 0.83781 0.98083 0.93003 0.93093 1.20610 0.92894 0.87544 0.95134 1.42217 1.20413 1.11594 1.62744 1.19272 1.02307 0.88415 1.26771 0.91153 1.24740 0.96765 0.98343 1.01254 1.69691 1.09180 1.36278 1.42862 0.86116 0.77194 0.84987 0.77895 1.20594 1.21960 1.21926 1.22529 1.00627 0.78802 1.02378 0.89562 0.89517 0.89005 0.80506 0.82803 0.88464 0.91581 0.89921 0.89491 0.89078 0.93535 0.95536 0.94808 0.77830 0.93669 0.89409 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 10.81 59.84 0.65 1.10 16 2 N -0.41 -3.73 3.16 -120.19 -0.38 -4.11 16 3 C 0.02 0.19 11.35 -16.84 -0.19 0.00 16 4 C -0.12 -1.12 6.66 -39.94 -0.27 -1.38 16 5 Cl -0.05 -0.44 29.30 -51.86 -1.52 -1.96 16 6 C -0.14 -1.46 8.55 -39.09 -0.33 -1.80 16 7 C -0.02 -0.25 5.75 -81.98 -0.47 -0.72 16 8 C 0.58 7.97 6.98 -12.86 -0.09 7.88 16 9 O -0.52 -8.99 16.43 5.20 0.09 -8.90 16 10 N -0.59 -7.33 2.20 -174.25 -0.38 -7.72 16 11 C 0.09 0.88 5.97 -3.39 -0.02 0.86 16 12 C -0.17 -1.62 5.78 -27.37 -0.16 -1.78 16 13 C 0.07 0.95 6.37 36.42 0.23 1.19 16 14 O -0.37 -6.52 9.18 -26.56 -0.24 -6.76 16 15 C 0.09 1.58 2.73 -25.78 -0.07 1.51 16 16 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 17 C 0.17 3.55 5.95 -4.04 -0.02 3.52 16 18 N -0.73 -19.52 5.49 -59.91 -0.33 -19.85 16 19 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -29.22 13.06 55.49 0.72 -28.49 16 23 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 27 C 0.08 1.12 4.91 -3.83 -0.02 1.10 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.59 7.95 -51.93 -0.41 0.18 16 30 H 0.09 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.15 1.55 7.62 -52.48 -0.40 1.15 16 33 H 0.10 0.85 4.31 -51.93 -0.22 0.63 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.62 7.19 -51.93 -0.37 0.24 16 39 H 0.03 0.56 8.14 -51.94 -0.42 0.14 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.39 11.13 7.53 -40.82 -0.31 10.82 16 42 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 44 H 0.10 1.41 7.20 -51.93 -0.37 1.04 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -35.49 374.26 -8.72 -44.21 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.28 Total: 5.99 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.01 Total: 3.90 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.37 Total: -60.16 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.16 Total: -15.66 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.52 Total: -1.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.49 -8.72 -44.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200930413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.200 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds