Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35495 * 126.98294 * 2 1 4 4 N 1.30516 * 107.30963 * 180.22466 * 3 2 1 5 5 N 1.28597 * 109.67253 * 359.76746 * 4 3 2 6 6 C 1.30519 * 109.67322 * 0.02562 * 5 4 3 7 7 C 1.50699 * 126.34872 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.46810 * 90.02439 * 7 6 5 9 9 C 1.48721 * 111.01459 * 314.36661 * 8 7 6 10 10 C 1.54381 * 104.51322 * 158.96688 * 9 8 7 11 11 H 1.09007 * 110.32345 * 95.21641 * 10 9 8 12 12 N 1.46499 * 110.32124 * 217.31828 * 10 9 8 13 13 C 1.34778 * 120.00278 * 272.17116 * 12 10 9 14 14 O 1.21278 * 119.99748 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.00209 * 180.02562 * 13 12 10 16 16 S 1.80999 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99825 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99855 * 179.72221 * 17 16 15 20 20 N 1.31634 * 119.99756 * 0.27728 * 19 17 16 21 21 Si 1.86803 * 120.00005 * 180.27923 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99753 * 21 19 17 23 23 H 1.48497 * 109.46782 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00030 * 21 19 17 25 25 C 1.54261 * 105.15147 * 336.26998 * 10 9 8 26 26 H 1.08995 * 110.32718 * 118.84536 * 25 10 9 27 27 O 1.42901 * 110.31918 * 241.05196 * 25 10 9 28 28 C 1.48563 * 111.00003 * 69.87669 * 8 7 6 29 29 H 1.09001 * 109.47426 * 270.16134 * 1 2 3 30 30 H 1.09002 * 109.47017 * 30.15878 * 1 2 3 31 31 H 1.08994 * 109.47253 * 150.15621 * 1 2 3 32 32 H 1.08004 * 126.34384 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47137 * 330.02427 * 7 6 5 34 34 H 1.09004 * 109.47316 * 210.02292 * 7 6 5 35 35 H 1.08994 * 110.38983 * 40.24664 * 9 8 7 36 36 H 1.09000 * 110.50498 * 277.74969 * 9 8 7 37 37 H 0.97000 * 119.99972 * 92.17472 * 12 10 9 38 38 H 1.08999 * 109.47278 * 59.99800 * 15 13 12 39 39 H 1.09002 * 109.46837 * 300.00183 * 15 13 12 40 40 H 0.97000 * 119.99219 * 179.97438 * 20 19 17 41 41 H 0.96704 * 113.99595 * 179.97438 * 27 25 10 42 42 H 1.09000 * 110.41217 * 82.17541 * 28 8 7 43 43 H 1.09003 * 110.41208 * 319.73689 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5091 -0.6430 -0.0030 6 6 2.2801 -1.0824 0.0026 7 6 1.8476 -2.5260 0.0059 8 7 1.7124 -2.9934 1.3921 9 6 2.8779 -2.5707 2.2135 10 6 2.3685 -2.6344 3.6695 11 1 2.6325 -3.5906 4.1215 12 7 2.9281 -1.5304 4.4531 13 6 4.1189 -1.6758 5.0675 14 8 4.7272 -2.7206 4.9713 15 6 4.6943 -0.5403 5.8740 16 16 6.2897 -1.0405 6.5673 17 6 6.7217 0.4315 7.4339 18 1 6.0573 1.2828 7.4172 19 6 7.9131 0.4950 8.1433 20 7 8.7227 -0.5428 8.1641 21 14 8.3675 2.0529 9.0684 22 1 7.3273 2.3448 10.0872 23 1 9.6792 1.8656 9.7389 24 1 8.4575 3.1870 8.1139 25 6 0.8356 -2.4955 3.5667 26 1 0.3472 -3.3841 3.9666 27 8 0.3951 -1.3291 4.2650 28 6 0.5456 -2.3579 2.0568 29 1 -0.3634 0.0029 1.0276 30 1 -0.3633 0.8886 -0.5163 31 1 -0.3633 -0.8913 -0.5114 32 1 1.9702 2.1170 -0.0004 33 1 2.5939 -3.1300 -0.5100 34 1 0.8888 -2.6193 -0.5041 35 1 3.1732 -1.5531 1.9583 36 1 3.7132 -3.2567 2.0726 37 1 2.4417 -0.6947 4.5297 38 1 4.0098 -0.2859 6.6832 39 1 4.8345 0.3280 5.2302 40 1 9.5554 -0.4982 8.6596 41 1 -0.5614 -1.1901 4.2343 42 1 -0.3731 -2.8838 1.7966 43 1 0.4749 -1.3067 1.7774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219219861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = -5.795867 kcal Electronic energy + Delta-G solvation = -27976.272685 eV Core-core repulsion = 23991.012621 eV Total energy + Delta-G solvation = -3985.260064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.25686 -41.28026 -39.79481 -37.27242 -36.08933 -35.36044 -34.60611 -32.96645 -31.39625 -29.98712 -29.09530 -28.41500 -27.69294 -26.60968 -23.44455 -23.36519 -22.25899 -21.63494 -21.18328 -19.90325 -18.77766 -18.26496 -18.00845 -17.51110 -17.20046 -16.90148 -16.69907 -16.50714 -16.26350 -15.96617 -15.67712 -15.46337 -15.13853 -14.83297 -14.51778 -14.46283 -14.14858 -13.97095 -13.71516 -13.33816 -13.19821 -13.11121 -12.88184 -12.78150 -12.65970 -12.51310 -12.41635 -12.13019 -11.75331 -11.34601 -11.18303 -11.14867 -11.05224 -11.01961 -10.36511 -10.32977 -10.20067 -9.84670 -8.70078 -8.36314 -6.15490 0.77167 1.22456 1.42565 1.43251 1.53094 1.54146 1.56592 1.82266 2.10023 2.25620 2.82990 2.97306 3.13797 3.23830 3.31773 3.46387 3.47383 3.71400 3.83276 3.92981 3.99425 4.01303 4.12670 4.21319 4.31357 4.37444 4.41598 4.45225 4.55203 4.61505 4.71754 4.80054 4.81914 4.87984 4.91071 5.13760 5.26741 5.38642 5.54273 5.68638 5.93187 6.17375 6.44557 6.84199 7.03969 7.20505 7.70782 8.73024 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.002795 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.452490 B =10016.500477 C =10725.972011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.465 5.465 3 C 0.161 3.839 4 N -0.357 5.357 5 N -0.338 5.338 6 C 0.142 3.858 7 C 0.129 3.871 8 N -0.483 5.483 9 C 0.021 3.979 10 C 0.139 3.861 11 H 0.083 0.917 12 N -0.695 5.695 13 C 0.532 3.468 14 O -0.562 6.562 15 C -0.127 4.127 16 S -0.145 6.145 17 C -0.551 4.551 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.001 2.999 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.263 1.263 25 C 0.107 3.893 26 H 0.099 0.901 27 O -0.571 6.571 28 C -0.010 4.010 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.256 0.744 33 H 0.106 0.894 34 H 0.140 0.860 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.416 0.584 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.272 0.728 41 H 0.406 0.594 42 H 0.133 0.867 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.923 1.423 -18.914 37.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.156 5.156 3 C -0.128 4.128 4 N -0.196 5.196 5 N -0.179 5.179 6 C -0.128 4.128 7 C -0.001 4.001 8 N -0.206 5.206 9 C -0.109 4.109 10 C 0.032 3.968 11 H 0.101 0.899 12 N -0.349 5.349 13 C 0.318 3.682 14 O -0.441 6.441 15 C -0.278 4.278 16 S 0.082 5.918 17 C -0.699 4.699 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.822 3.178 22 H -0.184 1.184 23 H -0.201 1.201 24 H -0.188 1.188 25 C 0.047 3.953 26 H 0.117 0.883 27 O -0.380 6.380 28 C -0.137 4.137 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.272 0.728 33 H 0.124 0.876 34 H 0.158 0.842 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.258 0.742 42 H 0.151 0.849 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -28.758 -0.914 -18.943 34.448 hybrid contribution -1.494 3.084 0.577 3.475 sum -30.252 2.170 -18.366 35.457 Atomic orbital electron populations 1.22716 0.72254 1.07800 1.05842 1.46529 1.10767 1.05249 1.53018 1.27214 0.86363 0.96776 1.02467 1.74208 1.21216 1.03642 1.20501 1.74266 1.20041 1.03916 1.19699 1.26182 0.87354 0.94884 1.04425 1.21229 1.05045 0.82063 0.91786 1.65716 1.02513 1.51429 1.00942 1.23590 0.94576 1.00334 0.92361 1.21854 0.93311 0.91082 0.90531 0.89870 1.45490 1.19718 1.18547 1.51173 1.20108 0.81289 0.87985 0.78785 1.90677 1.60607 1.30194 1.62572 1.23322 1.01871 1.00192 1.02423 1.85529 1.18596 1.23469 1.64219 1.23177 1.09442 1.00601 1.36647 0.90091 1.26174 0.94835 1.01326 0.96804 1.70185 1.11536 1.31967 1.41029 0.84972 0.77804 0.76841 0.78165 1.18400 1.20088 1.18792 1.22667 0.91131 0.89895 0.91600 0.88317 1.86374 1.30678 1.44805 1.76171 1.24374 0.95909 1.00112 0.93351 0.88160 0.86272 0.86882 0.72827 0.87587 0.84228 0.93032 0.91767 0.74649 0.87299 0.88367 0.91883 0.74196 0.84872 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.05 9.71 127.77 1.24 1.19 16 2 N -0.46 -5.42 2.87 -542.08 -1.56 -6.97 16 3 C 0.16 2.71 12.74 180.11 2.30 5.01 16 4 N -0.36 -10.57 12.21 -59.99 -0.73 -11.30 16 5 N -0.34 -10.31 10.96 -50.15 -0.55 -10.86 16 6 C 0.14 2.70 5.19 137.98 0.72 3.42 16 7 C 0.13 1.68 5.94 85.56 0.51 2.19 16 8 N -0.48 -7.48 5.65 -885.59 -5.00 -12.48 16 9 C 0.02 0.55 5.96 86.42 0.51 1.07 16 10 C 0.14 3.57 3.38 45.89 0.16 3.72 16 11 H 0.08 2.54 7.60 -2.38 -0.02 2.52 16 12 N -0.69 -21.45 4.87 -438.29 -2.14 -23.58 16 13 C 0.53 22.50 7.85 87.66 0.69 23.19 16 14 O -0.56 -28.60 15.54 -3.02 -0.05 -28.65 16 15 C -0.13 -5.70 6.16 71.23 0.44 -5.26 16 16 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 17 C -0.55 -33.27 9.50 67.96 0.65 -32.63 16 18 H 0.08 4.56 7.80 -2.91 -0.02 4.53 16 19 C 0.01 0.80 5.49 84.86 0.47 1.26 16 20 N -0.91 -58.13 13.22 21.65 0.29 -57.84 16 21 Si 1.00 45.38 29.55 68.60 2.03 47.40 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 C 0.11 1.43 4.42 31.49 0.14 1.57 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 O -0.57 -6.54 11.51 -148.98 -1.71 -8.25 16 28 C -0.01 -0.08 6.02 86.45 0.52 0.44 16 29 H 0.10 -0.30 6.60 -2.39 -0.02 -0.32 16 30 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.11 -0.55 7.19 -2.39 -0.02 -0.56 16 32 H 0.26 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.14 0.51 7.15 -2.38 -0.02 0.49 16 35 H 0.05 1.62 5.16 -2.39 -0.01 1.61 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.42 11.08 7.22 -92.71 -0.67 10.41 16 38 H 0.11 4.41 8.14 -2.39 -0.02 4.39 16 39 H 0.10 4.18 8.14 -2.39 -0.02 4.16 16 40 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 41 H 0.41 0.18 9.12 -74.05 -0.68 -0.50 16 42 H 0.13 0.07 8.14 -2.39 -0.02 0.06 16 43 H 0.07 0.45 3.56 -2.39 -0.01 0.44 16 Total: -1.00 -98.71 365.40 -2.53 -101.24 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -0.27 Total: 15.94 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 8.33 Total: 5.17 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -9.69 Total: -123.04 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -1.76 Total: -36.90 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -98.71 -2.53 -101.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219219861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.442 kcal (2) G-P(sol) polarization free energy of solvation -98.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds