Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45193 * 109.47347 * 2 1 4 4 C 1.34235 * 117.00244 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99844 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00008 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47101 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.47363 * 54.86766 * 7 6 4 9 9 C 1.50696 * 109.47128 * 174.87263 * 7 6 4 10 10 H 1.08001 * 119.99790 * 245.40435 * 9 7 6 11 11 C 1.37872 * 120.00264 * 65.40817 * 9 7 6 12 12 N 1.31523 * 119.99685 * 6.32903 * 11 9 7 13 13 Si 1.86796 * 120.00452 * 186.33038 * 11 9 7 14 14 H 1.48502 * 109.47017 * 84.98259 * 13 11 9 15 15 H 1.48493 * 109.47476 * 204.98394 * 13 11 9 16 16 H 1.48500 * 109.46905 * 324.98416 * 13 11 9 17 17 O 1.42903 * 109.46912 * 294.87350 * 7 6 4 18 18 C 1.42897 * 114.00114 * 149.99820 * 17 7 6 19 19 C 1.50696 * 109.47018 * 179.97438 * 18 17 7 20 20 C 1.35308 * 126.66170 * 90.00410 * 19 18 17 21 21 C 1.42305 * 103.92216 * 180.02562 * 20 19 18 22 22 C 1.48239 * 126.94182 * 179.97438 * 21 20 19 23 23 O 1.21411 * 119.99917 * 0.02562 * 22 21 20 24 24 O 1.34649 * 119.99602 * 179.72879 * 22 21 20 25 25 C 1.45206 * 116.99729 * 180.02562 * 24 22 21 26 26 C 1.52993 * 109.46888 * 180.02562 * 25 24 22 27 27 N 1.31014 * 106.11234 * 0.22979 * 21 20 19 28 28 O 1.20903 * 111.43315 * 359.59158 * 27 21 20 29 29 H 1.09000 * 109.47409 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47095 * 299.99902 * 1 2 3 31 31 H 1.09002 * 109.47132 * 60.00011 * 1 2 3 32 32 H 1.08998 * 109.47133 * 239.99541 * 2 1 3 33 33 H 1.09002 * 109.47132 * 119.99989 * 2 1 3 34 34 H 1.08997 * 109.47360 * 59.99141 * 6 4 3 35 35 H 1.09004 * 109.46445 * 299.99244 * 6 4 3 36 36 H 0.96999 * 119.99162 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.46965 * 60.00246 * 18 17 7 38 38 H 1.09001 * 109.47593 * 300.00052 * 18 17 7 39 39 H 1.07998 * 128.03848 * 359.97438 * 20 19 18 40 40 H 1.09002 * 109.47022 * 299.99990 * 25 24 22 41 41 H 1.09003 * 109.47215 * 59.99796 * 25 24 22 42 42 H 1.09002 * 109.47277 * 299.99829 * 26 25 24 43 43 H 1.08998 * 109.47624 * 60.00279 * 26 25 24 44 44 H 1.09008 * 109.47119 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8573 -0.0014 8 1 5.7799 2.2483 -0.8426 9 6 6.0243 4.2442 -0.1278 10 1 6.5855 4.5176 -1.0091 11 6 5.8344 5.1641 0.8815 12 7 5.2604 4.7968 2.0064 13 14 6.3924 6.9318 0.6513 14 1 5.3327 7.6977 -0.0527 15 1 6.6488 7.5468 1.9784 16 1 7.6394 6.9563 -0.1548 17 8 5.8958 2.2655 1.2201 18 6 7.1188 1.5363 1.0992 19 6 7.4941 0.9593 2.4397 20 6 7.1356 -0.2508 2.9274 21 6 7.7457 -0.2966 4.2122 22 6 7.6778 -1.4074 5.1916 23 8 7.0502 -2.4124 4.9271 24 8 8.3172 -1.3039 6.3721 25 6 8.2076 -2.4302 7.2820 26 6 8.9928 -2.1311 8.5606 27 7 8.3748 0.8434 4.3569 28 8 8.2474 1.5453 3.3807 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5852 3.4690 0.8904 35 1 3.5845 3.4699 -0.8896 36 1 5.1272 5.4440 2.7166 37 1 7.9086 2.2057 0.7582 38 1 6.9906 0.7286 0.3786 39 1 6.5270 -1.0061 2.4524 40 1 7.1593 -2.5962 7.5302 41 1 8.6140 -3.3227 6.8060 42 1 10.0412 -1.9649 8.3127 43 1 8.5861 -1.2388 9.0364 44 1 8.9102 -2.9765 9.2438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224261425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = -154.678888 kcal Electronic energy + Delta-G solvation = -29794.522635 eV Core-core repulsion = 25295.468145 eV Total energy + Delta-G solvation = -4499.054490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.81379 -40.39557 -39.76722 -37.07265 -36.79002 -35.79770 -33.92458 -33.28732 -32.04586 -31.67414 -31.56490 -30.06164 -26.29024 -25.89651 -25.52470 -23.18527 -23.06333 -22.42619 -21.67537 -20.49042 -19.88757 -17.63289 -17.47914 -17.30081 -17.18792 -16.65850 -16.46811 -16.19535 -16.14164 -15.61017 -15.10016 -14.45999 -14.27875 -14.16166 -13.99097 -13.71963 -13.58080 -13.19224 -13.05278 -12.84179 -12.65081 -12.24022 -12.21788 -11.87252 -11.84698 -11.46051 -11.42327 -11.28847 -11.16170 -10.96021 -10.90733 -10.81815 -10.75281 -10.62521 -10.36050 -10.14117 -9.98421 -9.63755 -9.45256 -9.14396 -8.67414 -8.08287 -6.11398 -4.31757 1.06809 1.83615 2.28268 2.92883 3.01652 3.22532 3.27293 3.32260 3.33592 3.35810 4.03336 4.32503 4.62929 4.68267 4.72970 5.00767 5.02178 5.08337 5.14513 5.16438 5.22665 5.37481 5.41315 5.47704 5.48358 5.52245 5.71066 5.76377 5.89481 5.92435 6.03209 6.07378 6.13634 6.15964 6.31545 6.37236 6.54303 6.77307 6.99809 7.31842 7.50679 7.72592 8.01652 8.25041 8.42891 8.52801 8.87242 9.44518 10.89717 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.008119 B = 0.003448 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3447.670409 B = 8119.145913 C =10785.383837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.368 6.368 4 C 0.460 3.540 5 O -0.515 6.515 6 C -0.098 4.098 7 C 0.233 3.767 8 H 0.021 0.979 9 C -0.569 4.569 10 H 0.064 0.936 11 C 0.087 3.913 12 N -0.845 5.845 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.273 1.273 17 O -0.349 6.349 18 C 0.148 3.852 19 C 0.013 3.987 20 C -0.176 4.176 21 C -0.028 4.028 22 C 0.559 3.441 23 O -0.492 6.492 24 O -0.343 6.343 25 C 0.061 3.939 26 C -0.152 4.152 27 N -0.314 5.314 28 O 0.144 5.856 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.182 0.818 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 -10.843 3.425 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.304 3.696 5 O -0.403 6.403 6 C -0.136 4.136 7 C 0.177 3.823 8 H 0.039 0.961 9 C -0.606 4.606 10 H 0.082 0.918 11 C -0.121 4.121 12 N -0.479 5.479 13 Si 0.715 3.285 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.198 1.198 17 O -0.268 6.268 18 C 0.069 3.931 19 C -0.050 4.050 20 C -0.198 4.198 21 C -0.183 4.183 22 C 0.401 3.599 23 O -0.377 6.377 24 O -0.259 6.259 25 C -0.012 4.012 26 C -0.209 4.209 27 N -0.011 5.011 28 O 0.062 5.938 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.199 0.801 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.303 -10.983 4.818 11.997 hybrid contribution -0.222 0.177 -0.537 0.607 sum 0.082 -10.806 4.281 11.623 Atomic orbital electron populations 1.21779 0.93382 1.02316 1.03297 1.22844 0.94817 0.81818 1.02013 1.86583 1.26325 1.30978 1.84731 1.24888 0.79364 0.94315 0.71002 1.90544 1.60240 1.43622 1.45909 1.21848 0.97784 0.87974 1.06001 1.19389 0.87831 0.92236 0.82827 0.96137 1.21428 1.37468 0.96490 1.05203 0.91800 1.25028 0.93913 0.98543 0.94597 1.70047 1.39864 1.34060 1.03940 0.86698 0.79320 0.84874 0.77642 1.20370 1.21107 1.19766 1.88125 1.35241 1.68275 1.35178 1.20420 0.91820 0.95757 0.85063 1.24632 0.94217 0.91759 0.94361 1.22340 1.04449 0.99845 0.93190 1.22166 1.05516 0.94406 0.96233 1.19504 0.75838 0.84474 0.80035 1.90846 1.39635 1.29870 1.77372 1.86625 1.67476 1.45181 1.26623 1.23128 1.01793 0.87108 0.89198 1.21810 1.01024 1.03189 0.94927 1.74304 1.17722 1.02799 1.06280 1.84850 1.52123 1.38251 1.18567 0.90866 0.91633 0.91727 0.91885 0.91736 0.85779 0.88315 0.92659 0.91278 0.91110 0.80089 0.90881 0.90914 0.91327 0.91259 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.23 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.58 10.22 -39.27 -0.40 -6.98 16 4 C 0.46 9.29 7.84 36.01 0.28 9.57 16 5 O -0.52 -11.12 15.17 -24.03 -0.36 -11.48 16 6 C -0.10 -2.09 5.29 -27.88 -0.15 -2.24 16 7 C 0.23 5.35 1.82 -27.89 -0.05 5.30 16 8 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 9 C -0.57 -14.01 8.86 -34.44 -0.31 -14.31 16 10 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 11 C 0.09 2.20 5.23 -17.82 -0.09 2.11 16 12 N -0.85 -22.30 11.23 55.43 0.62 -21.68 16 13 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 O -0.35 -8.25 8.13 -49.58 -0.40 -8.65 16 18 C 0.15 2.90 6.30 36.00 0.23 3.13 16 19 C 0.01 0.25 7.10 -35.35 -0.25 -0.01 16 20 C -0.18 -3.12 10.92 -39.06 -0.43 -3.55 16 21 C -0.03 -0.50 7.24 -82.54 -0.60 -1.10 16 22 C 0.56 9.39 7.99 34.84 0.28 9.67 16 23 O -0.49 -8.69 16.74 -19.20 -0.32 -9.01 16 24 O -0.34 -5.09 10.23 -40.35 -0.41 -5.51 16 25 C 0.06 0.65 6.19 37.15 0.23 0.88 16 26 C -0.15 -1.19 10.29 37.15 0.38 -0.81 16 27 N -0.31 -5.96 12.12 33.29 0.40 -5.55 16 28 O 0.14 2.80 11.18 17.23 0.19 2.99 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 33 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 34 H 0.12 2.91 6.89 -51.93 -0.36 2.55 16 35 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 39 H 0.18 2.96 8.06 -52.49 -0.42 2.54 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 391.88 15.07 5.91 5.91 Total: -1.00 -29.84 391.88 -5.87 -35.71 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.21 Total: 1.19 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 0.14 Total: 8.49 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 1.03 Total: -27.23 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.71 Total: -38.64 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.84 -5.87 -35.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224261425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.966 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds