Wall clock time and date at job start Sat Apr 11 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 109.47016 * 2 1 4 4 C 1.46900 * 109.47151 * 239.99977 * 2 1 3 5 5 C 1.46898 * 109.47293 * 119.99758 * 2 1 3 6 6 C 1.53002 * 109.47038 * 63.97126 * 5 2 1 7 7 H 1.09000 * 109.47408 * 178.31534 * 6 5 2 8 8 C 1.50697 * 109.46932 * 298.31436 * 6 5 2 9 9 H 1.08000 * 120.00566 * 113.89128 * 8 6 5 10 10 C 1.37878 * 120.00053 * 293.88907 * 8 6 5 11 11 N 1.31518 * 120.00343 * 180.02562 * 10 8 6 12 12 Si 1.86803 * 119.99987 * 0.02562 * 10 8 6 13 13 H 1.48502 * 109.47191 * 89.99641 * 12 10 8 14 14 H 1.48494 * 109.47096 * 209.99883 * 12 10 8 15 15 H 1.48499 * 109.47029 * 329.99961 * 12 10 8 16 16 O 1.42895 * 109.47129 * 58.31091 * 6 5 2 17 17 C 1.35679 * 116.99831 * 93.64838 * 16 6 5 18 18 N 1.32273 * 119.68350 * 353.92613 * 17 16 6 19 19 C 1.31945 * 121.64373 * 179.75015 * 18 17 16 20 20 C 1.38086 * 120.83221 * 0.52622 * 19 18 17 21 21 N 1.48022 * 120.35011 * 179.76195 * 20 19 18 22 22 O 1.21804 * 119.99667 * 179.97438 * 21 20 19 23 23 O 1.21803 * 120.00580 * 359.97438 * 21 20 19 24 24 C 1.38774 * 119.29082 * 359.74223 * 20 19 18 25 25 C 1.38424 * 118.48667 * 359.97438 * 24 20 19 26 26 N 1.48022 * 120.44425 * 179.97438 * 25 24 20 27 27 O 1.21800 * 119.99724 * 0.02562 * 26 25 24 28 28 O 1.21801 * 119.99775 * 180.02562 * 26 25 24 29 29 H 1.09002 * 109.46635 * 281.67531 * 1 2 3 30 30 H 1.08999 * 109.46959 * 41.67276 * 1 2 3 31 31 H 1.09000 * 109.47075 * 161.67674 * 1 2 3 32 32 H 1.08999 * 109.47283 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46994 * 300.00029 * 3 2 1 34 34 H 1.08995 * 109.47235 * 59.99603 * 3 2 1 35 35 H 1.08999 * 109.47140 * 322.82496 * 4 2 1 36 36 H 1.09001 * 109.47133 * 82.82613 * 4 2 1 37 37 H 1.09001 * 109.47219 * 202.82570 * 4 2 1 38 38 H 1.08997 * 109.47623 * 303.97053 * 5 2 1 39 39 H 1.09002 * 109.47170 * 183.97125 * 5 2 1 40 40 H 0.96995 * 120.00189 * 180.02562 * 11 10 8 41 41 H 1.08007 * 119.57860 * 180.26753 * 19 18 17 42 42 H 1.08002 * 120.75746 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1994 5 6 1.9587 -0.6924 1.1994 6 6 1.5319 -2.1609 1.1505 7 1 1.9206 -2.6816 2.0256 8 6 0.0274 -2.2467 1.1422 9 1 -0.4870 -2.6279 0.2724 10 6 -0.6925 -1.8386 2.2450 11 7 -2.0055 -1.9139 2.2379 12 14 0.1970 -1.1786 3.7492 13 1 0.3613 0.2918 3.6217 14 1 -0.5959 -1.4843 4.9669 15 1 1.5329 -1.8186 3.8547 16 8 2.0502 -2.7684 -0.0345 17 6 3.2421 -3.4078 0.0719 18 7 3.9217 -3.3424 1.2048 19 6 5.0820 -3.9532 1.3522 20 6 5.6363 -4.6790 0.3166 21 7 6.9411 -5.3557 0.4920 22 8 7.4240 -5.9946 -0.4257 23 8 7.5319 -5.2736 1.5540 24 6 4.9570 -4.7676 -0.8903 25 6 3.7393 -4.1205 -1.0115 26 7 2.9782 -4.1858 -2.2793 27 8 3.4224 -4.8123 -3.2247 28 8 1.9078 -3.6129 -2.3772 29 1 -0.3633 0.2080 1.0065 30 1 -0.3633 0.7676 -0.6833 31 1 -0.3633 -0.9756 -0.3231 32 1 3.0487 1.3851 -0.0005 33 1 1.5953 1.8988 -0.8900 34 1 1.5953 1.8989 0.8899 35 1 1.3078 -1.5380 -1.4220 36 1 1.9588 -0.0021 -2.0430 37 1 2.9728 -1.0512 -1.0233 38 1 1.5385 -0.2214 2.0880 39 1 3.0464 -0.6312 1.2357 40 1 -2.5120 -1.6264 3.0136 41 1 5.6066 -3.8811 2.2936 42 1 5.3685 -5.3293 -1.7158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227107839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:53 Heat of formation + Delta-G solvation = 133.835582 kcal Electronic energy + Delta-G solvation = -32168.916385 eV Core-core repulsion = 27662.895401 eV Total energy + Delta-G solvation = -4506.020984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.99403 -43.38186 -43.15793 -42.02476 -39.72560 -37.92600 -37.80155 -35.62386 -35.07943 -33.74866 -32.35550 -29.77630 -29.65291 -28.39725 -28.25822 -27.80170 -25.88810 -24.28764 -24.14528 -23.19419 -21.54853 -20.72401 -20.46708 -19.69669 -19.54005 -19.25435 -19.04774 -18.75261 -18.60595 -18.06737 -17.90294 -17.22781 -17.11557 -16.73997 -16.20715 -15.52820 -15.13309 -14.94762 -14.79729 -14.60607 -14.03148 -13.92035 -13.58808 -13.33457 -13.22582 -13.17895 -13.14119 -12.92727 -12.87411 -12.75714 -12.66720 -12.53025 -12.46326 -12.43359 -12.39113 -12.30828 -11.98425 -11.88461 -11.57862 -10.95920 -10.84859 -8.55835 -6.66156 -1.88348 -1.70314 -0.41349 -0.34921 -0.17798 0.03774 0.82487 1.00243 1.07591 1.27337 1.40345 1.45409 2.07005 2.08864 2.37798 2.60744 2.61552 2.68790 2.81665 2.92640 2.99994 3.11769 3.60408 3.70721 3.77877 3.97274 4.00200 4.06630 4.15833 4.26517 4.34664 4.39318 4.57093 4.64127 4.71156 4.74187 4.84712 4.90767 4.95274 5.20659 5.30424 5.47231 5.93840 6.16237 6.23426 6.45981 6.91335 8.54160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.244 5.244 3 C -0.052 4.052 4 C -0.043 4.043 5 C -0.026 4.026 6 C 0.164 3.836 7 H 0.091 0.909 8 C -0.543 4.543 9 H 0.076 0.924 10 C 0.059 3.941 11 N -0.898 5.898 12 Si 0.875 3.125 13 H -0.226 1.226 14 H -0.313 1.313 15 H -0.227 1.227 16 O -0.243 6.243 17 C 0.426 3.574 18 N -0.510 5.510 19 C 0.288 3.712 20 C -0.143 4.143 21 N 0.040 4.960 22 O -0.177 6.177 23 O -0.133 6.133 24 C 0.099 3.901 25 C -0.132 4.132 26 N 0.040 4.960 27 O -0.182 6.182 28 O -0.116 6.116 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.147 0.853 40 H 0.277 0.723 41 H 0.240 0.760 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.816 13.348 -3.450 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 N 0.098 4.902 3 C -0.192 4.192 4 C -0.184 4.184 5 C -0.148 4.148 6 C 0.109 3.891 7 H 0.108 0.892 8 C -0.580 4.580 9 H 0.093 0.907 10 C -0.147 4.147 11 N -0.532 5.532 12 Si 0.700 3.300 13 H -0.150 1.150 14 H -0.241 1.241 15 H -0.150 1.150 16 O -0.144 6.144 17 C 0.245 3.755 18 N -0.236 5.236 19 C 0.128 3.872 20 C -0.230 4.230 21 N 0.559 4.441 22 O -0.387 6.387 23 O -0.354 6.354 24 C 0.074 3.926 25 C -0.220 4.220 26 N 0.560 4.440 27 O -0.389 6.389 28 O -0.341 6.341 29 H 0.110 0.890 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.162 0.838 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.165 0.835 40 H 0.087 0.913 41 H 0.256 0.744 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.790 14.238 -2.498 16.918 hybrid contribution 0.080 -1.044 0.370 1.110 sum 8.870 13.195 -2.128 16.041 Atomic orbital electron populations 1.24587 0.75566 1.09787 1.07355 1.45645 1.15925 1.15219 1.13401 1.24423 1.05940 0.78658 1.10136 1.24417 1.03958 1.02514 0.87461 1.24658 1.04561 0.96109 0.89485 1.21090 0.94790 0.88769 0.84492 0.89173 1.20576 0.87097 1.46747 1.03584 0.90652 1.25217 0.94641 0.95580 0.99231 1.69878 1.07276 1.44276 1.31773 0.86980 0.81048 0.81698 0.80302 1.15003 1.24104 1.14967 1.86942 1.27473 1.61828 1.38151 1.20073 0.86341 0.82485 0.86611 1.68466 1.09007 1.25834 1.20302 1.23598 0.86203 0.79159 0.98247 1.21813 0.90747 1.11639 0.98837 1.43255 1.01413 0.98996 1.00451 1.94665 1.69436 1.40118 1.34498 1.94609 1.60894 1.65364 1.14577 1.21228 0.87427 0.86472 0.97511 1.20956 0.98427 1.14683 0.87940 1.43128 1.00545 0.99058 1.01300 1.94652 1.72858 1.41955 1.29421 1.94610 1.07249 1.43737 1.88496 0.88989 0.85864 0.85489 0.84994 0.84142 0.86270 0.86305 0.83809 0.88568 0.86069 0.83474 0.91311 0.74373 0.77909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.41 6.88 127.69 0.88 1.29 16 2 N -0.24 4.90 0.05 ******* -0.07 4.83 16 3 C -0.05 1.47 7.84 127.69 1.00 2.47 16 4 C -0.04 0.84 6.99 127.69 0.89 1.73 16 5 C -0.03 0.37 3.80 86.30 0.33 0.70 16 6 C 0.16 -0.60 1.70 29.85 0.05 -0.55 16 7 H 0.09 -0.11 5.59 -2.39 -0.01 -0.12 16 8 C -0.54 -3.86 5.87 25.60 0.15 -3.71 16 9 H 0.08 1.08 7.26 -2.91 -0.02 1.06 16 10 C 0.06 0.73 4.01 84.65 0.34 1.07 16 11 N -0.90 -19.32 13.96 21.45 0.30 -19.02 16 12 Si 0.88 5.78 24.27 68.60 1.66 7.44 16 13 H -0.23 0.02 6.88 99.48 0.68 0.71 16 14 H -0.31 -4.86 7.11 99.48 0.71 -4.15 16 15 H -0.23 -0.44 6.37 99.48 0.63 0.20 16 16 O -0.24 1.25 3.86 -68.91 -0.27 0.98 16 17 C 0.43 -2.70 6.86 84.78 0.58 -2.12 16 18 N -0.51 4.61 8.66 -308.93 -2.67 1.94 16 19 C 0.29 -3.23 10.71 84.64 0.91 -2.32 16 20 C -0.14 1.01 6.87 36.47 0.25 1.26 16 21 N 0.04 -0.05 4.45 -46.24 -0.21 -0.25 16 22 O -0.18 -0.54 18.52 18.88 0.35 -0.19 16 23 O -0.13 0.02 18.47 18.88 0.35 0.37 16 24 C 0.10 -0.64 9.16 22.44 0.21 -0.43 16 25 C -0.13 0.61 6.89 36.57 0.25 0.86 16 26 N 0.04 0.02 4.45 -45.99 -0.20 -0.18 16 27 O -0.18 -0.70 18.52 18.89 0.35 -0.35 16 28 O -0.12 -0.20 16.00 25.58 0.41 0.21 16 29 H 0.09 -0.70 5.79 -2.39 -0.01 -0.72 16 30 H 0.12 -2.42 7.82 -2.39 -0.02 -2.44 16 31 H 0.13 -0.59 4.44 -2.39 -0.01 -0.60 16 32 H 0.13 -4.25 8.12 -2.39 -0.02 -4.27 16 33 H 0.14 -4.50 7.87 -2.39 -0.02 -4.52 16 34 H 0.12 -3.37 8.14 -2.39 -0.02 -3.39 16 35 H 0.12 -1.46 4.52 -2.39 -0.01 -1.47 16 36 H 0.14 -3.77 7.74 -2.39 -0.02 -3.78 16 37 H 0.10 -1.98 6.53 -2.39 -0.02 -2.00 16 38 H 0.12 -1.57 3.86 -2.39 -0.01 -1.57 16 39 H 0.15 -3.18 8.05 -2.39 -0.02 -3.20 16 40 H 0.28 6.02 8.31 -92.71 -0.77 5.25 16 41 H 0.24 -4.11 7.61 -2.91 -0.02 -4.13 16 42 H 0.20 -1.49 7.33 -2.91 -0.02 -1.51 16 Total: 0.00 -41.50 338.15 6.84 -34.66 By element: Atomic # 1 Polarization: -31.69 SS G_CDS: 1.00 Total: -30.68 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 5.84 Total: 0.25 kcal Atomic # 7 Polarization: -9.84 SS G_CDS: -2.85 Total: -12.69 kcal Atomic # 8 Polarization: -0.17 SS G_CDS: 1.19 Total: 1.02 kcal Atomic # 14 Polarization: 5.78 SS G_CDS: 1.66 Total: 7.44 kcal Total: -41.50 6.84 -34.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227107839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.495 kcal (2) G-P(sol) polarization free energy of solvation -41.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds