Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40476 * 126.85849 * 2 1 4 4 H 0.97001 * 126.64781 * 359.97379 * 3 2 1 5 5 C 1.35159 * 106.69805 * 180.24605 * 3 2 1 6 6 C 1.50702 * 125.53840 * 179.73695 * 5 3 2 7 7 N 1.46899 * 109.47192 * 179.97438 * 6 5 3 8 8 C 1.47441 * 110.99932 * 69.86985 * 7 6 5 9 9 C 1.54323 * 107.22978 * 123.25770 * 8 7 6 10 10 C 1.55143 * 103.02065 * 22.28299 * 9 8 7 11 11 H 1.09006 * 110.98844 * 82.47283 * 10 9 8 12 12 N 1.46491 * 110.99477 * 206.25470 * 10 9 8 13 13 C 1.34777 * 119.99906 * 273.54898 * 12 10 9 14 14 O 1.21283 * 120.00260 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99970 * 179.97438 * 13 12 10 16 16 S 1.81004 * 109.47093 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99934 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99851 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99757 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99540 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47121 * 89.99847 * 21 19 17 23 23 H 1.48501 * 109.46600 * 209.99686 * 21 19 17 24 24 H 1.48495 * 109.47124 * 329.99359 * 21 19 17 25 25 C 1.47837 * 110.99945 * 190.71921 * 7 6 5 26 26 N 1.30734 * 108.92140 * 359.55569 * 5 3 2 27 27 C 1.34450 * 109.94520 * 0.45827 * 26 5 3 28 28 O 1.21721 * 125.92127 * 179.68693 * 27 26 5 29 29 H 1.09002 * 109.46975 * 89.99799 * 1 2 3 30 30 H 1.09003 * 109.47271 * 210.00420 * 1 2 3 31 31 H 1.08997 * 109.47060 * 330.00178 * 1 2 3 32 32 H 1.09000 * 109.47066 * 299.99708 * 6 5 3 33 33 H 1.08999 * 109.46816 * 59.99411 * 6 5 3 34 34 H 1.08999 * 109.89008 * 242.66399 * 8 7 6 35 35 H 1.09001 * 109.89154 * 3.69108 * 8 7 6 36 36 H 1.09000 * 110.70727 * 140.66542 * 9 8 7 37 37 H 1.09000 * 110.70434 * 263.90179 * 9 8 7 38 38 H 0.96997 * 120.00568 * 93.54641 * 12 10 9 39 39 H 1.08995 * 109.47027 * 299.99594 * 15 13 12 40 40 H 1.08994 * 109.47470 * 60.00046 * 15 13 12 41 41 H 0.97002 * 119.99743 * 180.02562 * 20 19 17 42 42 H 1.09010 * 110.37271 * 332.46027 * 25 7 6 43 43 H 1.08995 * 110.37977 * 94.80528 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3076 1.1240 0.0000 4 1 2.0323 2.0541 -0.0004 5 6 3.5764 0.6582 -0.0056 6 6 4.8213 1.5074 -0.0133 7 7 6.0063 0.6393 -0.0171 8 6 6.1464 -0.0578 -1.3087 9 6 7.5407 0.2937 -1.8690 10 6 8.3320 0.7103 -0.6012 11 1 8.7170 -0.1641 -0.0764 12 7 9.4164 1.6353 -0.9397 13 6 10.6175 1.1557 -1.3189 14 8 10.8008 -0.0417 -1.3795 15 6 11.7328 2.1072 -1.6676 16 16 13.2065 1.1649 -2.1330 17 6 14.3181 2.4872 -2.4806 18 1 13.9896 3.5105 -2.3751 19 6 15.6158 2.2134 -2.8900 20 7 16.0162 0.9661 -3.0180 21 14 16.7944 3.6153 -3.2577 22 1 17.5272 3.9835 -2.0199 23 1 17.7637 3.1868 -4.2980 24 1 16.0291 4.7896 -3.7479 25 6 7.2363 1.4207 0.2321 26 7 3.5482 -0.6489 0.0008 27 6 2.2747 -1.0801 0.0005 28 8 1.9145 -2.2428 0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 4.8274 2.1351 -0.9044 33 1 4.8363 2.1382 0.8755 34 1 6.0675 -1.1347 -1.1594 35 1 5.3717 0.2786 -1.9977 36 1 7.9976 -0.5768 -2.3398 37 1 7.4753 1.1237 -2.5725 38 1 9.2700 2.5929 -0.8909 39 1 11.4254 2.7371 -2.5024 40 1 11.9598 2.7330 -0.8046 41 1 16.9232 0.7748 -3.3038 42 1 7.1082 2.4486 -0.1074 43 1 7.4916 1.3991 1.2915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266302614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = 44.436845 kcal Electronic energy + Delta-G solvation = -26119.706304 eV Core-core repulsion = 22136.624494 eV Total energy + Delta-G solvation = -3983.081810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.67946 -39.96470 -38.52278 -37.52610 -35.09047 -34.06142 -32.43538 -32.15318 -31.47034 -29.55832 -28.85578 -27.37264 -25.94183 -25.45183 -22.47460 -21.84594 -21.40038 -21.11692 -20.19637 -18.85490 -17.87860 -17.16997 -16.93108 -16.62064 -16.21752 -16.06815 -15.73852 -14.99986 -14.87382 -14.81111 -14.65336 -14.33176 -13.87824 -13.73253 -13.66184 -13.40841 -13.15134 -12.98719 -12.75012 -12.51311 -12.34648 -11.80290 -11.76081 -11.52613 -11.41576 -11.07120 -11.03202 -10.88631 -10.76947 -10.49240 -10.15199 -9.82382 -9.43429 -9.07796 -8.95044 -8.94587 -8.74949 -8.23910 -6.50474 -6.22103 -3.92794 0.83542 0.92479 2.84813 3.05309 3.07483 3.11038 3.21732 3.25499 3.29553 3.44899 3.70078 3.83592 4.19660 4.24579 4.27718 4.35674 4.48537 4.62234 4.66783 4.87967 4.89513 4.91575 4.99116 5.13011 5.13403 5.17666 5.31783 5.34683 5.57693 5.61613 5.62398 5.86312 5.89704 5.97638 6.11628 6.15160 6.39858 6.48142 6.62326 6.65867 7.58602 7.58729 7.66431 7.87845 8.34412 8.59479 9.23129 10.85282 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.044590 B = 0.001609 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.789866 B =17402.117193 C =17772.977785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.449 5.449 3 N -0.503 5.503 4 H 0.444 0.556 5 C 0.400 3.600 6 C 0.117 3.883 7 N -0.505 5.505 8 C 0.054 3.946 9 C -0.157 4.157 10 C 0.142 3.858 11 H 0.106 0.894 12 N -0.732 5.732 13 C 0.534 3.466 14 O -0.512 6.512 15 C -0.153 4.153 16 S -0.059 6.059 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.273 1.273 25 C 0.039 3.961 26 N -0.539 5.539 27 C 0.632 3.368 28 O -0.534 6.534 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.055 0.945 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.625 9.609 6.836 33.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.280 5.280 3 N -0.235 5.235 4 H 0.291 0.709 5 C 0.124 3.876 6 C -0.014 4.014 7 N -0.230 5.230 8 C -0.074 4.074 9 C -0.197 4.197 10 C 0.035 3.965 11 H 0.124 0.876 12 N -0.386 5.386 13 C 0.320 3.680 14 O -0.385 6.385 15 C -0.304 4.304 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.089 4.089 26 N -0.287 5.287 27 C 0.331 3.669 28 O -0.404 6.404 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -31.184 5.586 7.090 32.464 hybrid contribution -0.508 4.464 -0.819 4.567 sum -31.693 10.050 6.271 33.834 Atomic orbital electron populations 1.21847 0.73449 1.04600 1.03268 1.49563 1.04705 0.99352 1.74388 1.44793 1.02730 1.03517 1.72440 0.70860 1.23816 0.84971 0.91722 0.87046 1.20906 0.84887 0.91845 1.03789 1.63349 1.00262 1.25796 1.33564 1.22829 0.95543 1.01369 0.87642 1.23262 0.95385 1.02884 0.98163 1.21926 0.86226 0.93668 0.94657 0.87601 1.45909 1.11712 1.09498 1.71498 1.20315 0.82375 0.89581 0.75766 1.90721 1.81499 1.16033 1.50263 1.23530 1.00065 1.02399 1.04411 1.85441 1.00566 1.10043 1.87199 1.22866 0.98902 0.93663 1.53075 0.90947 1.24989 0.97342 0.96416 0.94805 1.70015 1.18367 1.17851 1.43959 0.86171 0.80008 0.81104 0.78227 1.20267 1.20753 1.19742 1.23261 0.88492 0.95471 1.01641 1.72012 1.18750 1.07638 1.30318 1.18512 0.83299 0.84841 0.80220 1.90976 1.78550 1.14534 1.56386 0.91198 0.88210 0.90270 0.90461 0.86709 0.88704 0.92889 0.89565 0.91234 0.76904 0.89291 0.89205 0.92159 0.92662 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.40 11.46 59.85 0.69 1.09 16 2 N -0.45 -3.38 4.06 -72.07 -0.29 -3.67 16 3 N -0.50 -2.04 7.36 32.73 0.24 -1.80 16 4 H 0.44 -0.24 8.96 -182.31 -1.63 -1.87 16 5 C 0.40 2.64 7.52 -155.11 -1.17 1.48 16 6 C 0.12 0.46 5.17 -4.98 -0.03 0.43 16 7 N -0.51 -3.80 4.96 -232.69 -1.15 -4.95 16 8 C 0.05 0.49 5.79 -2.83 -0.02 0.47 16 9 C -0.16 -1.61 6.64 -24.90 -0.17 -1.78 16 10 C 0.14 1.50 3.31 -65.79 -0.22 1.28 16 11 H 0.11 1.41 7.73 -51.93 -0.40 1.01 16 12 N -0.73 -8.61 5.23 -51.74 -0.27 -8.88 16 13 C 0.53 9.39 7.85 -10.98 -0.09 9.30 16 14 O -0.51 -11.26 15.61 5.56 0.09 -11.17 16 15 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 21 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.04 0.26 6.31 -2.30 -0.01 0.25 16 26 N -0.54 -6.38 10.10 -13.82 -0.14 -6.52 16 27 C 0.63 8.19 8.97 -87.02 -0.78 7.41 16 28 O -0.53 -9.12 17.91 5.17 0.09 -9.03 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.45 8.12 -51.93 -0.42 0.02 16 31 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.08 0.13 7.96 -51.93 -0.41 -0.28 16 33 H 0.12 0.14 8.07 -51.93 -0.42 -0.28 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.43 7.31 -51.93 -0.38 0.05 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.40 3.34 8.52 -40.82 -0.35 2.99 16 39 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 40 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.06 0.24 7.67 -51.92 -0.40 -0.16 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -41.81 379.65 -10.93 -52.74 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -7.34 Total: -3.95 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.37 Total: 4.41 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.88 Total: -51.05 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.18 Total: -20.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -41.81 -10.93 -52.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.173 kcal (2) G-P(sol) polarization free energy of solvation -41.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds