Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40476 * 126.85849 * 2 1 4 4 H 0.97001 * 126.64781 * 359.97379 * 3 2 1 5 5 C 1.35159 * 106.69805 * 180.24605 * 3 2 1 6 6 C 1.50702 * 125.53840 * 179.73695 * 5 3 2 7 7 N 1.46899 * 109.47192 * 179.97438 * 6 5 3 8 8 C 1.47441 * 110.99932 * 69.86985 * 7 6 5 9 9 C 1.54323 * 107.22978 * 123.25770 * 8 7 6 10 10 C 1.55143 * 103.02065 * 22.28299 * 9 8 7 11 11 H 1.09006 * 110.98844 * 82.47283 * 10 9 8 12 12 N 1.46491 * 110.99477 * 206.25470 * 10 9 8 13 13 C 1.34777 * 119.99906 * 273.54898 * 12 10 9 14 14 O 1.21283 * 120.00260 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99970 * 179.97438 * 13 12 10 16 16 S 1.81004 * 109.47093 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99934 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99851 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99757 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99540 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47121 * 89.99847 * 21 19 17 23 23 H 1.48501 * 109.46600 * 209.99686 * 21 19 17 24 24 H 1.48495 * 109.47124 * 329.99359 * 21 19 17 25 25 C 1.47837 * 110.99945 * 190.71921 * 7 6 5 26 26 N 1.30734 * 108.92140 * 359.55569 * 5 3 2 27 27 C 1.34450 * 109.94520 * 0.45827 * 26 5 3 28 28 O 1.21721 * 125.92127 * 179.68693 * 27 26 5 29 29 H 1.09002 * 109.46975 * 89.99799 * 1 2 3 30 30 H 1.09003 * 109.47271 * 210.00420 * 1 2 3 31 31 H 1.08997 * 109.47060 * 330.00178 * 1 2 3 32 32 H 1.09000 * 109.47066 * 299.99708 * 6 5 3 33 33 H 1.08999 * 109.46816 * 59.99411 * 6 5 3 34 34 H 1.08999 * 109.89008 * 242.66399 * 8 7 6 35 35 H 1.09001 * 109.89154 * 3.69108 * 8 7 6 36 36 H 1.09000 * 110.70727 * 140.66542 * 9 8 7 37 37 H 1.09000 * 110.70434 * 263.90179 * 9 8 7 38 38 H 0.96997 * 120.00568 * 93.54641 * 12 10 9 39 39 H 1.08995 * 109.47027 * 299.99594 * 15 13 12 40 40 H 1.08994 * 109.47470 * 60.00046 * 15 13 12 41 41 H 0.97002 * 119.99743 * 180.02562 * 20 19 17 42 42 H 1.09010 * 110.37271 * 332.46027 * 25 7 6 43 43 H 1.08995 * 110.37977 * 94.80528 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3076 1.1240 0.0000 4 1 2.0323 2.0541 -0.0004 5 6 3.5764 0.6582 -0.0056 6 6 4.8213 1.5074 -0.0133 7 7 6.0063 0.6393 -0.0171 8 6 6.1464 -0.0578 -1.3087 9 6 7.5407 0.2937 -1.8690 10 6 8.3320 0.7103 -0.6012 11 1 8.7170 -0.1641 -0.0764 12 7 9.4164 1.6353 -0.9397 13 6 10.6175 1.1557 -1.3189 14 8 10.8008 -0.0417 -1.3795 15 6 11.7328 2.1072 -1.6676 16 16 13.2065 1.1649 -2.1330 17 6 14.3181 2.4872 -2.4806 18 1 13.9896 3.5105 -2.3751 19 6 15.6158 2.2134 -2.8900 20 7 16.0162 0.9661 -3.0180 21 14 16.7944 3.6153 -3.2577 22 1 17.5272 3.9835 -2.0199 23 1 17.7637 3.1868 -4.2980 24 1 16.0291 4.7896 -3.7479 25 6 7.2363 1.4207 0.2321 26 7 3.5482 -0.6489 0.0008 27 6 2.2747 -1.0801 0.0005 28 8 1.9145 -2.2428 0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 4.8274 2.1351 -0.9044 33 1 4.8363 2.1382 0.8755 34 1 6.0675 -1.1347 -1.1594 35 1 5.3717 0.2786 -1.9977 36 1 7.9976 -0.5768 -2.3398 37 1 7.4753 1.1237 -2.5725 38 1 9.2700 2.5929 -0.8909 39 1 11.4254 2.7371 -2.5024 40 1 11.9598 2.7330 -0.8046 41 1 16.9232 0.7748 -3.3038 42 1 7.1082 2.4486 -0.1074 43 1 7.4916 1.3991 1.2915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266302614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 7.580883 kcal Electronic energy + Delta-G solvation = -26121.304499 eV Core-core repulsion = 22136.624494 eV Total energy + Delta-G solvation = -3984.680005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.31245 -40.97398 -39.55971 -38.41927 -35.88720 -34.92454 -34.55644 -32.90327 -32.22957 -30.74249 -29.54941 -28.14302 -27.58717 -26.46503 -23.10593 -22.56734 -22.36757 -21.85337 -21.22773 -19.81376 -19.35639 -17.98891 -17.73232 -17.69335 -17.03623 -16.86314 -16.84513 -16.59437 -16.27696 -16.02512 -15.45501 -15.31876 -14.75841 -14.62109 -14.44990 -14.41063 -14.22137 -13.71132 -13.68603 -13.52994 -13.23582 -13.13525 -12.87793 -12.72916 -12.59281 -12.41216 -12.35453 -12.21259 -11.72998 -11.68118 -11.11769 -11.07752 -10.93425 -10.90983 -10.22634 -10.06327 -9.63986 -9.26689 -8.63620 -8.31908 -6.09855 0.36344 0.37830 1.29777 1.44713 1.49995 1.59598 1.66578 2.19869 2.30574 2.32470 2.54050 2.95632 3.02454 3.35256 3.42275 3.60889 3.75394 3.97257 4.01300 4.10335 4.12574 4.34069 4.36413 4.36669 4.37182 4.42266 4.53810 4.56262 4.63546 4.67736 4.83347 4.95912 4.98999 5.04157 5.14386 5.30059 5.44563 5.52528 5.91065 5.96907 6.22446 6.30783 6.58672 6.97110 7.09469 7.10626 7.33141 8.77247 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.044590 B = 0.001609 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.789866 B =17402.117193 C =17772.977785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.445 5.445 3 N -0.467 5.467 4 H 0.470 0.530 5 C 0.408 3.592 6 C 0.117 3.883 7 N -0.527 5.527 8 C 0.068 3.932 9 C -0.152 4.152 10 C 0.134 3.866 11 H 0.069 0.931 12 N -0.699 5.699 13 C 0.534 3.466 14 O -0.567 6.567 15 C -0.127 4.127 16 S -0.158 6.158 17 C -0.545 4.545 18 H 0.085 0.915 19 C 0.012 3.988 20 N -0.913 5.913 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.256 1.256 25 C 0.057 3.943 26 N -0.595 5.595 27 C 0.611 3.389 28 O -0.602 6.602 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.157 0.843 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.420 0.580 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.270 0.730 42 H 0.099 0.901 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.457 15.329 7.378 37.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.273 5.273 3 N -0.201 5.201 4 H 0.323 0.677 5 C 0.133 3.867 6 C -0.013 4.013 7 N -0.252 5.252 8 C -0.060 4.060 9 C -0.192 4.192 10 C 0.028 3.972 11 H 0.087 0.913 12 N -0.354 5.354 13 C 0.320 3.680 14 O -0.445 6.445 15 C -0.278 4.278 16 S 0.069 5.931 17 C -0.693 4.693 18 H 0.103 0.897 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.180 1.180 25 C -0.071 4.071 26 N -0.345 5.345 27 C 0.309 3.691 28 O -0.478 6.478 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.174 0.826 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.258 0.742 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -33.117 11.478 7.655 35.876 hybrid contribution -0.097 2.775 -0.942 2.932 sum -33.214 14.253 6.713 36.761 Atomic orbital electron populations 1.22161 0.71119 1.05970 1.04522 1.49547 1.05921 0.99526 1.72285 1.44773 1.01535 1.03708 1.70047 0.67671 1.24380 0.86555 0.90583 0.85201 1.21308 0.81558 0.90944 1.07538 1.63181 1.01950 1.27661 1.32427 1.22532 0.94868 0.99748 0.88867 1.23168 0.95903 1.01994 0.98139 1.21994 0.86648 0.93106 0.95483 0.91299 1.45531 1.09886 1.10961 1.68996 1.20099 0.83667 0.88401 0.75804 1.90718 1.82593 1.18145 1.52995 1.23361 0.96761 1.01722 1.06001 1.85685 1.05561 1.13880 1.88009 1.23218 0.99303 0.93939 1.52791 0.89665 1.26139 0.99443 0.99313 0.94352 1.70193 1.18918 1.20564 1.45240 0.84946 0.77236 0.77557 0.78192 1.19345 1.20561 1.17984 1.23175 0.86037 0.96675 1.01175 1.71906 1.18819 1.10649 1.33164 1.18706 0.84399 0.85054 0.80962 1.90893 1.79730 1.17290 1.59909 0.90006 0.89643 0.86155 0.86483 0.82558 0.92485 0.91514 0.93227 0.89420 0.74157 0.86987 0.86880 0.92088 0.88350 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 11.46 127.77 1.46 2.03 16 2 N -0.44 -6.02 4.06 -500.01 -2.03 -8.05 16 3 N -0.47 -2.01 7.36 -50.36 -0.37 -2.38 16 4 H 0.47 -3.10 8.96 -213.08 -1.91 -5.01 16 5 C 0.41 4.17 7.52 138.02 1.04 5.20 16 6 C 0.12 0.29 5.17 85.56 0.44 0.73 16 7 N -0.53 -6.38 4.96 -890.10 -4.42 -10.80 16 8 C 0.07 1.18 5.79 86.65 0.50 1.68 16 9 C -0.15 -3.05 6.64 31.78 0.21 -2.84 16 10 C 0.13 2.67 3.31 46.38 0.15 2.82 16 11 H 0.07 1.93 7.73 -2.38 -0.02 1.92 16 12 N -0.70 -14.75 5.23 -435.99 -2.28 -17.03 16 13 C 0.53 18.53 7.85 87.66 0.69 19.21 16 14 O -0.57 -26.02 15.61 -3.04 -0.05 -26.06 16 15 C -0.13 -4.73 6.16 71.24 0.44 -4.29 16 16 S -0.16 -8.69 20.57 -56.49 -1.16 -9.85 16 17 C -0.54 -30.55 9.50 67.96 0.65 -29.91 16 18 H 0.09 4.38 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.68 5.49 84.86 0.47 1.15 16 20 N -0.91 -56.00 13.22 21.65 0.29 -55.72 16 21 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 25 C 0.06 0.53 6.31 86.78 0.55 1.07 16 26 N -0.60 -14.08 10.10 -316.04 -3.19 -17.27 16 27 C 0.61 16.41 8.97 179.09 1.61 18.02 16 28 O -0.60 -22.39 17.91 -4.41 -0.08 -22.47 16 29 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 31 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.12 -0.47 7.96 -2.39 -0.02 -0.49 16 33 H 0.16 -0.78 8.07 -2.39 -0.02 -0.80 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 0.95 7.31 -2.39 -0.02 0.94 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.42 5.08 8.52 -92.71 -0.79 4.29 16 39 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 40 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.10 0.13 7.67 -2.38 -0.02 0.11 16 43 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -103.12 379.65 -4.70 -107.82 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -1.64 Total: 1.97 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 8.20 Total: 14.89 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -12.00 Total: -111.25 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.13 Total: -48.53 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -103.12 -4.70 -107.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.399 kcal (2) G-P(sol) polarization free energy of solvation -103.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds