Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47530 * 2 1 4 4 C 1.53001 * 109.47493 * 120.00138 * 2 1 3 5 5 N 1.46499 * 109.47267 * 174.99930 * 4 2 1 6 6 C 1.34780 * 119.99780 * 179.97438 * 5 4 2 7 7 O 1.21589 * 120.00148 * 359.97438 * 6 5 4 8 8 C 1.47573 * 120.00080 * 179.97438 * 6 5 4 9 9 C 1.39740 * 120.13874 * 0.29562 * 8 6 5 10 10 C 1.37731 * 119.90479 * 180.29586 * 9 8 6 11 11 C 1.38760 * 120.18871 * 359.42704 * 10 9 8 12 12 F 1.35105 * 119.85804 * 180.27855 * 11 10 9 13 13 C 1.38495 * 120.28895 * 0.25366 * 11 10 9 14 14 C 1.38198 * 120.09080 * 0.04712 * 13 11 10 15 15 F 1.35095 * 120.09648 * 179.97438 * 14 13 11 16 16 N 1.46901 * 109.46964 * 240.00012 * 2 1 3 17 17 C 1.46900 * 111.00141 * 84.99912 * 16 2 1 18 18 C 1.50696 * 109.47041 * 180.02562 * 17 16 2 19 19 O 1.21295 * 120.00630 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00269 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00510 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99960 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00007 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00362 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99967 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47171 * 90.00126 * 25 23 21 27 27 H 1.48502 * 109.47448 * 209.99764 * 25 23 21 28 28 H 1.48502 * 109.47349 * 330.00071 * 25 23 21 29 29 H 1.09003 * 109.46930 * 300.00011 * 1 2 3 30 30 H 1.08997 * 109.47195 * 60.00037 * 1 2 3 31 31 H 1.09007 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47254 * 54.99312 * 4 2 1 33 33 H 1.08996 * 109.46958 * 294.99893 * 4 2 1 34 34 H 0.96998 * 120.00253 * 359.97438 * 5 4 2 35 35 H 1.08005 * 120.04522 * 359.97438 * 9 8 6 36 36 H 1.08002 * 119.90884 * 179.70970 * 10 9 8 37 37 H 1.07994 * 119.95633 * 180.02562 * 13 11 10 38 38 H 1.00902 * 111.00047 * 321.04021 * 16 2 1 39 39 H 1.08992 * 109.46667 * 299.99785 * 17 16 2 40 40 H 1.08996 * 109.47279 * 60.00173 * 17 16 2 41 41 H 0.97005 * 119.99129 * 359.97438 * 20 18 17 42 42 H 0.97002 * 120.00132 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4283 2.1911 7 8 3.5686 -1.8836 3.1427 8 6 5.6438 -1.5347 2.1317 9 6 6.3421 -1.0070 1.0424 10 6 7.7142 -1.1144 0.9890 11 6 8.4061 -1.7346 2.0195 12 9 9.7525 -1.8313 1.9629 13 6 7.7227 -2.2546 3.1060 14 6 6.3455 -2.1588 3.1687 15 9 5.6786 -2.6665 4.2283 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2226 -2.3469 18 6 2.5872 -0.5219 -3.5560 19 8 2.8676 -1.6989 -3.4703 20 7 2.7281 0.1203 -4.7326 21 6 3.1868 -0.5570 -5.8327 22 1 3.4357 -1.6052 -5.7565 23 6 3.3316 0.1050 -7.0457 24 7 3.0283 1.3803 -7.1386 25 14 3.9573 -0.8178 -8.5445 26 1 2.8079 -1.4000 -9.2829 27 1 4.6921 0.1194 -9.4317 28 1 4.8694 -1.9064 -8.1105 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7198 1.2952 33 1 1.7518 -0.1584 2.1369 34 1 3.9824 -0.4628 0.4315 35 1 5.8061 -0.5201 0.2410 36 1 8.2535 -0.7107 0.1448 37 1 8.2667 -2.7359 3.9052 38 1 1.4495 -1.4980 -1.4100 39 1 1.0870 0.6162 -2.5525 40 1 2.7588 1.0461 -2.1183 41 1 2.5042 1.0617 -4.8010 42 1 3.1290 1.8423 -7.9855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266989325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = -135.730360 kcal Electronic energy + Delta-G solvation = -28652.761361 eV Core-core repulsion = 24075.733777 eV Total energy + Delta-G solvation = -4577.027584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.41131 -49.16967 -40.19653 -38.67304 -38.25496 -36.94079 -34.27032 -33.84857 -31.76911 -31.30561 -30.98608 -30.47092 -26.69725 -26.26638 -24.17242 -23.90726 -23.20484 -21.10878 -20.72266 -19.39189 -18.68185 -18.01395 -17.83718 -17.50694 -16.37916 -16.32652 -16.02130 -15.84628 -15.68543 -15.55534 -15.16348 -15.02453 -14.71779 -14.59740 -14.51746 -14.08132 -13.92271 -13.45634 -13.28489 -13.11675 -12.74800 -12.68122 -12.59189 -12.25071 -12.17838 -11.89349 -11.74593 -11.64502 -11.47592 -11.10427 -11.05392 -10.44462 -10.28071 -10.07519 -9.57537 -9.53679 -9.22719 -8.97358 -8.58416 -8.20081 -8.03334 -6.48435 -3.89492 0.20414 0.62897 2.46828 2.99658 3.13028 3.22586 3.28025 3.32656 3.44160 3.82492 3.97332 3.98261 4.14378 4.22451 4.42418 4.47310 4.67853 4.73398 4.91017 5.04949 5.13944 5.20488 5.27512 5.35087 5.43051 5.52003 5.55908 5.60226 5.62305 5.64859 5.69719 5.80780 5.92241 5.98662 6.18012 6.28837 6.36959 7.05158 7.45014 7.48924 7.50501 7.99130 8.11567 8.53630 9.11204 9.46819 9.97787 10.69088 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009862 B = 0.002664 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.393037 B =10508.152231 C =12877.301554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.085 0.915 4 C 0.135 3.865 5 N -0.704 5.704 6 C 0.557 3.443 7 O -0.534 6.534 8 C -0.182 4.182 9 C -0.022 4.022 10 C -0.169 4.169 11 C 0.155 3.845 12 F -0.127 7.127 13 C -0.206 4.206 14 C 0.189 3.811 15 F -0.107 7.107 16 N -0.665 5.665 17 C 0.049 3.951 18 C 0.438 3.562 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.409 0.591 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.354 0.646 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 1.125 17.936 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.010 3.990 5 N -0.356 5.356 6 C 0.343 3.657 7 O -0.413 6.413 8 C -0.186 4.186 9 C -0.041 4.041 10 C -0.188 4.188 11 C 0.135 3.865 12 F -0.105 7.105 13 C -0.226 4.226 14 C 0.168 3.832 15 F -0.085 7.085 16 N -0.298 5.298 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.246 0.754 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.661 0.196 18.682 19.256 hybrid contribution -0.406 0.393 -1.388 1.499 sum 4.255 0.589 17.294 17.819 Atomic orbital electron populations 1.22429 0.96092 1.02813 1.02684 1.21863 0.93533 0.98314 0.90663 0.89690 1.21377 0.79506 1.01229 0.96863 1.45664 1.08006 1.58893 1.22988 1.17823 0.86139 0.78731 0.82987 1.90836 1.69466 1.47735 1.33222 1.20164 0.94719 1.06603 0.97091 1.21186 0.93369 0.93923 0.95609 1.21207 0.94789 1.03107 0.99731 1.17526 0.77261 0.97110 0.94589 1.91562 1.28843 1.93805 1.96283 1.20996 0.92994 1.07371 1.01236 1.17242 0.88765 0.93158 0.84050 1.91625 1.80285 1.83621 1.52948 1.60196 1.57759 1.09254 1.02568 1.21724 1.00139 0.95599 0.90899 1.19797 0.85377 0.88260 0.84208 1.90541 1.55331 1.16206 1.84612 1.41870 1.57651 1.12429 1.07945 1.19694 1.40111 0.96426 0.86751 0.87912 1.25259 0.97571 0.95754 0.99263 1.69607 1.48571 1.08851 1.27211 0.85869 0.78920 0.78999 0.80587 1.20408 1.20893 1.19360 0.91795 0.91864 0.91914 0.91239 0.91087 0.75410 0.83036 0.83037 0.82807 0.82528 0.93641 0.89635 0.77488 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.16 37.16 0.34 -1.26 16 2 C 0.07 0.67 2.75 -67.71 -0.19 0.48 16 3 H 0.08 0.77 7.80 -51.93 -0.41 0.37 16 4 C 0.13 1.44 5.37 -4.04 -0.02 1.42 16 5 N -0.70 -8.04 5.34 -61.34 -0.33 -8.37 16 6 C 0.56 7.45 7.76 -12.45 -0.10 7.36 16 7 O -0.53 -8.91 15.34 5.29 0.08 -8.83 16 8 C -0.18 -2.08 5.88 -104.91 -0.62 -2.70 16 9 C -0.02 -0.20 9.53 -39.21 -0.37 -0.58 16 10 C -0.17 -1.44 10.01 -39.57 -0.40 -1.84 16 11 C 0.15 1.41 7.30 -39.29 -0.29 1.12 16 12 F -0.13 -1.19 17.26 2.25 0.04 -1.15 16 13 C -0.21 -1.91 9.99 -39.50 -0.39 -2.30 16 14 C 0.19 2.16 7.28 -38.97 -0.28 1.88 16 15 F -0.11 -1.43 15.55 2.25 0.04 -1.40 16 16 N -0.66 -8.90 5.31 -108.00 -0.57 -9.47 16 17 C 0.05 0.74 5.97 -4.98 -0.03 0.71 16 18 C 0.44 9.47 7.82 -10.99 -0.09 9.38 16 19 O -0.58 -14.76 15.78 5.54 0.09 -14.67 16 20 N -0.56 -13.37 5.29 -10.97 -0.06 -13.43 16 21 C -0.30 -8.02 9.68 -14.94 -0.14 -8.17 16 22 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -23.66 13.05 55.50 0.72 -22.93 16 25 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.41 4.27 6.17 -40.82 -0.25 4.02 16 35 H 0.15 1.17 6.40 -52.48 -0.34 0.84 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.35 5.23 8.17 -39.29 -0.32 4.91 16 39 H 0.05 0.63 7.43 -51.93 -0.39 0.24 16 40 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 41 H 0.39 8.90 7.90 -40.82 -0.32 8.58 16 42 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -32.15 371.30 -6.97 -39.12 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -4.87 Total: 14.15 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -2.67 Total: 6.02 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.24 Total: -54.20 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.17 Total: -23.50 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.07 Total: -2.55 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.15 -6.97 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266989325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.613 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds