Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47530 * 2 1 4 4 C 1.53001 * 109.47493 * 120.00138 * 2 1 3 5 5 N 1.46499 * 109.47267 * 174.99930 * 4 2 1 6 6 C 1.34780 * 119.99780 * 179.97438 * 5 4 2 7 7 O 1.21589 * 120.00148 * 359.97438 * 6 5 4 8 8 C 1.47573 * 120.00080 * 179.97438 * 6 5 4 9 9 C 1.39740 * 120.13874 * 0.29562 * 8 6 5 10 10 C 1.37731 * 119.90479 * 180.29586 * 9 8 6 11 11 C 1.38760 * 120.18871 * 359.42704 * 10 9 8 12 12 F 1.35105 * 119.85804 * 180.27855 * 11 10 9 13 13 C 1.38495 * 120.28895 * 0.25366 * 11 10 9 14 14 C 1.38198 * 120.09080 * 0.04712 * 13 11 10 15 15 F 1.35095 * 120.09648 * 179.97438 * 14 13 11 16 16 N 1.46901 * 109.46964 * 240.00012 * 2 1 3 17 17 C 1.46900 * 111.00141 * 84.99912 * 16 2 1 18 18 C 1.50696 * 109.47041 * 180.02562 * 17 16 2 19 19 O 1.21295 * 120.00630 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00269 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00510 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99960 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00007 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00362 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99967 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47171 * 90.00126 * 25 23 21 27 27 H 1.48502 * 109.47448 * 209.99764 * 25 23 21 28 28 H 1.48502 * 109.47349 * 330.00071 * 25 23 21 29 29 H 1.09003 * 109.46930 * 300.00011 * 1 2 3 30 30 H 1.08997 * 109.47195 * 60.00037 * 1 2 3 31 31 H 1.09007 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47254 * 54.99312 * 4 2 1 33 33 H 1.08996 * 109.46958 * 294.99893 * 4 2 1 34 34 H 0.96998 * 120.00253 * 359.97438 * 5 4 2 35 35 H 1.08005 * 120.04522 * 359.97438 * 9 8 6 36 36 H 1.08002 * 119.90884 * 179.70970 * 10 9 8 37 37 H 1.07994 * 119.95633 * 180.02562 * 13 11 10 38 38 H 1.00902 * 111.00047 * 321.04021 * 16 2 1 39 39 H 1.08992 * 109.46667 * 299.99785 * 17 16 2 40 40 H 1.08996 * 109.47279 * 60.00173 * 17 16 2 41 41 H 0.97005 * 119.99129 * 359.97438 * 20 18 17 42 42 H 0.97002 * 120.00132 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4283 2.1911 7 8 3.5686 -1.8836 3.1427 8 6 5.6438 -1.5347 2.1317 9 6 6.3421 -1.0070 1.0424 10 6 7.7142 -1.1144 0.9890 11 6 8.4061 -1.7346 2.0195 12 9 9.7525 -1.8313 1.9629 13 6 7.7227 -2.2546 3.1060 14 6 6.3455 -2.1588 3.1687 15 9 5.6786 -2.6665 4.2283 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2226 -2.3469 18 6 2.5872 -0.5219 -3.5560 19 8 2.8676 -1.6989 -3.4703 20 7 2.7281 0.1203 -4.7326 21 6 3.1868 -0.5570 -5.8327 22 1 3.4357 -1.6052 -5.7565 23 6 3.3316 0.1050 -7.0457 24 7 3.0283 1.3803 -7.1386 25 14 3.9573 -0.8178 -8.5445 26 1 2.8079 -1.4000 -9.2829 27 1 4.6921 0.1194 -9.4317 28 1 4.8694 -1.9064 -8.1105 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7198 1.2952 33 1 1.7518 -0.1584 2.1369 34 1 3.9824 -0.4628 0.4315 35 1 5.8061 -0.5201 0.2410 36 1 8.2535 -0.7107 0.1448 37 1 8.2667 -2.7359 3.9052 38 1 1.4495 -1.4980 -1.4100 39 1 1.0870 0.6162 -2.5525 40 1 2.7588 1.0461 -2.1183 41 1 2.5042 1.0617 -4.8010 42 1 3.1290 1.8423 -7.9855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266989325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = -158.965672 kcal Electronic energy + Delta-G solvation = -28653.768920 eV Core-core repulsion = 24075.733777 eV Total energy + Delta-G solvation = -4578.035143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.15339 -50.09249 -41.14435 -40.15411 -39.25616 -38.07641 -35.94150 -35.13000 -33.24832 -32.60113 -31.82142 -31.40959 -27.92870 -27.41022 -25.66243 -24.82655 -24.00693 -22.00545 -21.64042 -21.06363 -19.88780 -19.50578 -18.76097 -18.37060 -17.67353 -17.22728 -17.08901 -16.79819 -16.64400 -16.55526 -16.41110 -16.24618 -15.95064 -15.81820 -15.53449 -15.38948 -15.08010 -14.67320 -14.36957 -14.13631 -13.74365 -13.65133 -13.53426 -13.42113 -13.37977 -13.05309 -12.99970 -12.75945 -12.59791 -12.49387 -12.37478 -12.10758 -11.87717 -11.47056 -11.13296 -10.31699 -10.29348 -10.13864 -9.97050 -9.82786 -9.32796 -8.43856 -5.91561 -0.61141 -0.11931 1.39567 1.44283 1.55842 1.58546 2.09000 2.11253 2.31065 2.44885 2.66459 2.92553 3.18914 3.24570 3.42290 3.52329 3.62948 3.76259 3.86122 3.99189 4.12839 4.35098 4.38791 4.53092 4.53993 4.59194 4.65841 4.67363 4.75518 4.81523 4.89082 4.90800 4.91530 5.02242 5.27507 5.42898 5.44598 5.55032 5.92050 6.12987 6.37636 6.50516 6.64449 7.14517 7.17226 7.62105 8.17541 8.73329 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009862 B = 0.002664 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.393037 B =10508.152231 C =12877.301554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.105 0.895 4 C 0.134 3.866 5 N -0.695 5.695 6 C 0.552 3.448 7 O -0.576 6.576 8 C -0.196 4.196 9 C -0.018 4.018 10 C -0.161 4.161 11 C 0.155 3.845 12 F -0.126 7.126 13 C -0.198 4.198 14 C 0.167 3.833 15 F -0.125 7.125 16 N -0.674 5.674 17 C 0.065 3.935 18 C 0.439 3.561 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.330 4.330 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.987 3.013 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.415 0.585 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.172 0.828 38 H 0.345 0.655 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.396 0.604 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 2.423 17.607 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.123 0.877 4 C 0.010 3.990 5 N -0.346 5.346 6 C 0.340 3.660 7 O -0.457 6.457 8 C -0.200 4.200 9 C -0.036 4.036 10 C -0.180 4.180 11 C 0.135 3.865 12 F -0.104 7.104 13 C -0.217 4.217 14 C 0.146 3.854 15 F -0.103 7.103 16 N -0.306 5.306 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.460 4.460 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.811 3.189 26 H -0.200 1.200 27 H -0.197 1.197 28 H -0.198 1.198 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.253 0.747 35 H 0.185 0.815 36 H 0.192 0.808 37 H 0.190 0.810 38 H 0.164 0.836 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.230 0.770 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.159 1.534 18.346 19.119 hybrid contribution -0.541 -0.027 -1.237 1.350 sum 4.619 1.507 17.109 17.785 Atomic orbital electron populations 1.22385 0.94903 1.02793 1.03553 1.21868 0.94378 0.98593 0.88462 0.87729 1.21435 0.79036 1.00753 0.97758 1.45662 1.08360 1.57994 1.22569 1.18156 0.86996 0.78212 0.82672 1.90807 1.70428 1.49671 1.34822 1.20162 0.93825 1.07830 0.98169 1.21323 0.93712 0.93469 0.95109 1.21466 0.94488 1.02026 0.99989 1.17595 0.77253 0.96969 0.94635 1.91569 1.28824 1.93781 1.96269 1.21116 0.92111 1.06707 1.01771 1.17491 0.89599 0.94271 0.84004 1.91575 1.80794 1.84106 1.53811 1.60174 1.58431 1.09093 1.02918 1.21592 1.01424 0.95316 0.88375 1.20938 0.83253 0.87984 0.85172 1.90517 1.56533 1.18364 1.85479 1.41931 1.58435 1.12599 1.08184 1.19620 1.41930 0.95853 0.88568 0.90416 1.25943 0.97382 0.96540 1.01228 1.69660 1.48866 1.09589 1.28006 0.85008 0.78398 0.77917 0.77537 1.19961 1.19702 1.19760 0.90002 0.91849 0.92473 0.92746 0.90034 0.74702 0.81532 0.80804 0.81036 0.83580 0.91549 0.86915 0.76965 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.16 71.98 0.66 -2.04 16 2 C 0.08 1.35 2.75 44.91 0.12 1.47 16 3 H 0.10 1.50 7.80 -2.39 -0.02 1.48 16 4 C 0.13 2.71 5.37 86.38 0.46 3.18 16 5 N -0.69 -15.21 5.34 -466.23 -2.49 -17.70 16 6 C 0.55 14.81 7.76 86.71 0.67 15.49 16 7 O -0.58 -19.74 15.34 -4.00 -0.06 -19.80 16 8 C -0.20 -4.42 5.88 -20.05 -0.12 -4.54 16 9 C -0.02 -0.29 9.53 22.51 0.21 -0.08 16 10 C -0.16 -2.39 10.01 22.27 0.22 -2.16 16 11 C 0.16 2.55 7.30 22.46 0.16 2.71 16 12 F -0.13 -2.12 17.26 44.97 0.78 -1.35 16 13 C -0.20 -3.46 9.99 22.32 0.22 -3.24 16 14 C 0.17 3.84 7.28 22.66 0.17 4.00 16 15 F -0.12 -3.47 15.55 44.97 0.70 -2.77 16 16 N -0.67 -16.84 5.31 -495.61 -2.63 -19.47 16 17 C 0.07 1.81 5.97 85.56 0.51 2.32 16 18 C 0.44 18.70 7.82 87.66 0.69 19.38 16 19 O -0.62 -31.77 15.78 -3.08 -0.05 -31.82 16 20 N -0.57 -27.20 5.29 -306.99 -1.62 -28.82 16 21 C -0.33 -17.82 9.68 84.04 0.81 -17.00 16 22 H 0.08 4.51 7.16 -2.91 -0.02 4.49 16 23 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 24 N -0.92 -47.63 13.05 21.66 0.28 -47.35 16 25 Si 0.99 41.45 29.55 68.60 2.03 43.48 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.99 7.45 -2.39 -0.02 0.97 16 31 H 0.06 0.95 8.13 -2.38 -0.02 0.93 16 32 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.41 7.96 6.17 -92.71 -0.57 7.39 16 35 H 0.17 2.23 6.40 -2.91 -0.02 2.21 16 36 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.35 9.89 8.17 -89.69 -0.73 9.15 16 39 H 0.07 1.63 7.43 -2.39 -0.02 1.61 16 40 H 0.11 2.59 8.05 -2.39 -0.02 2.57 16 41 H 0.40 17.77 7.90 -92.70 -0.73 17.04 16 42 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 Total: -1.00 -70.73 371.30 1.27 -69.45 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.92 Total: 36.76 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 5.27 Total: 19.39 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -6.46 Total: -113.34 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -0.11 Total: -51.62 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 1.48 Total: -4.12 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -70.73 1.27 -69.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266989325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.513 kcal (2) G-P(sol) polarization free energy of solvation -70.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds