Wall clock time and date at job start Sat Apr 11 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00296 * 2 1 4 4 C 1.53002 * 109.46856 * 66.04906 * 3 2 1 5 5 N 1.46496 * 109.47428 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00266 * 180.02562 * 5 4 3 7 7 O 1.21561 * 120.00129 * 0.26795 * 6 5 4 8 8 C 1.47706 * 119.99736 * 179.97438 * 6 5 4 9 9 C 1.39683 * 120.15587 * 359.72129 * 8 6 5 10 10 C 1.37847 * 119.92203 * 179.78997 * 9 8 6 11 11 C 1.38447 * 120.24053 * 0.49008 * 10 9 8 12 12 C 1.38384 * 120.31751 * 359.73938 * 11 10 9 13 13 F 1.35097 * 119.96906 * 180.02562 * 12 11 10 14 14 C 1.38552 * 120.06960 * 0.02562 * 12 11 10 15 15 F 1.35095 * 120.12253 * 179.97438 * 14 12 11 16 16 C 1.46903 * 111.00085 * 236.04548 * 2 1 3 17 17 C 1.50698 * 109.47417 * 293.95828 * 16 2 1 18 18 O 1.21286 * 119.99840 * 359.97438 * 17 16 2 19 19 N 1.34777 * 119.99916 * 179.97438 * 17 16 2 20 20 C 1.37105 * 119.99685 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99871 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99533 * 180.02562 * 20 19 17 23 23 N 1.31404 * 120.00391 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99412 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47593 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47136 * 120.00306 * 24 22 20 27 27 H 1.48504 * 109.46593 * 239.99730 * 24 22 20 28 28 H 1.09002 * 109.46674 * 59.99909 * 1 2 3 29 29 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47107 * 299.99501 * 1 2 3 31 31 H 1.08992 * 109.47475 * 306.05034 * 3 2 1 32 32 H 1.09000 * 109.47229 * 186.04643 * 3 2 1 33 33 H 1.08996 * 109.47407 * 59.99657 * 4 3 2 34 34 H 1.09000 * 109.46986 * 299.99885 * 4 3 2 35 35 H 0.97008 * 119.99402 * 359.97438 * 5 4 3 36 36 H 1.07997 * 120.03690 * 359.97438 * 9 8 6 37 37 H 1.07993 * 119.88088 * 180.20303 * 10 9 8 38 38 H 1.07997 * 119.84304 * 179.76667 * 11 10 9 39 39 H 1.09004 * 109.46708 * 53.95743 * 16 2 1 40 40 H 1.09004 * 109.47324 * 173.95338 * 16 2 1 41 41 H 0.96998 * 120.00220 * 359.97438 * 19 17 16 42 42 H 0.97003 * 120.00439 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3183 5 7 2.1561 3.4252 1.3182 6 6 1.9556 4.2239 2.3851 7 8 1.3437 3.8077 3.3495 8 6 2.4849 5.6029 2.3851 9 6 3.1987 6.0805 1.2835 10 6 3.6869 7.3696 1.2868 11 6 3.4810 8.1903 2.3827 12 6 2.7793 7.7258 3.4813 13 9 2.5822 8.5328 4.5466 14 6 2.2788 6.4339 3.4898 15 9 1.5941 5.9792 4.5619 16 6 1.9955 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9730 18 8 1.0054 -2.5833 -0.0032 19 7 2.0180 -3.1179 -1.9034 20 6 1.6922 -4.4412 -1.7533 21 1 1.1299 -4.7643 -0.8897 22 6 2.0856 -5.3666 -2.7124 23 7 2.7703 -4.9735 -3.7628 24 14 1.6411 -7.1694 -2.5082 25 1 0.8739 -7.3507 -1.2498 26 1 0.8139 -7.6088 -3.6606 27 1 2.8829 -7.9820 -2.4518 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.5612 1.9273 -0.8308 32 1 3.0798 1.3443 -0.1082 33 1 2.0658 1.5014 2.1492 34 1 0.5473 2.0844 1.4266 35 1 2.6483 3.7557 0.5505 36 1 3.3654 5.4414 0.4290 37 1 4.2358 7.7392 0.4335 38 1 3.8696 9.1979 2.3800 39 1 1.5611 -0.3872 -2.0628 40 1 3.0798 -0.6611 -1.1757 41 1 2.5228 -2.8277 -2.6792 42 1 3.0446 -5.6194 -4.4325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267213790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:49 Heat of formation + Delta-G solvation = -117.770960 kcal Electronic energy + Delta-G solvation = -27966.962847 eV Core-core repulsion = 23390.714041 eV Total energy + Delta-G solvation = -4576.248806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.90129 -48.94981 -40.50061 -38.88480 -38.53434 -36.84128 -34.85050 -33.84503 -32.06588 -31.26995 -30.99407 -29.41865 -27.73329 -25.67084 -24.79133 -23.76754 -23.17249 -21.34531 -21.09547 -19.19887 -18.94074 -17.89111 -17.84482 -17.69206 -16.84868 -16.76284 -16.25834 -16.02347 -15.85291 -15.44151 -15.38106 -15.04740 -14.88543 -14.65972 -14.60432 -14.10547 -13.95560 -13.57246 -13.50777 -13.35499 -13.09445 -12.66290 -12.63748 -12.29188 -12.16281 -11.91408 -11.55053 -11.45237 -11.31268 -11.10958 -10.97524 -10.35085 -10.34220 -10.23891 -9.78649 -9.50653 -9.37390 -9.31334 -8.51298 -8.01533 -7.92199 -6.43671 -3.84323 -0.05686 0.29816 2.22559 2.54770 3.03000 3.15326 3.19918 3.26284 3.33671 3.78852 3.85135 3.88265 4.00947 4.04417 4.16750 4.25289 4.43120 4.72594 4.89193 4.98171 5.06110 5.08145 5.22391 5.25184 5.26777 5.32258 5.46103 5.59081 5.64707 5.76894 5.82479 5.88564 5.95722 6.02686 6.08602 6.24743 6.52928 7.05034 7.17140 7.27777 7.54039 7.80617 8.04821 8.59779 9.16645 9.52304 10.04048 10.74121 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.034925 B = 0.001590 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.532110 B =17610.944868 C =18172.360841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.720 5.720 6 C 0.556 3.444 7 O -0.515 6.515 8 C -0.143 4.143 9 C -0.068 4.068 10 C -0.108 4.108 11 C -0.101 4.101 12 C 0.058 3.942 13 F -0.124 7.124 14 C 0.127 3.873 15 F -0.102 7.102 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.016 0.984 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.399 0.601 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 28.778 4.284 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.002 4.002 5 N -0.372 5.372 6 C 0.341 3.659 7 O -0.390 6.390 8 C -0.148 4.148 9 C -0.087 4.087 10 C -0.126 4.126 11 C -0.120 4.120 12 C 0.038 3.962 13 F -0.102 7.102 14 C 0.106 3.894 15 F -0.080 7.080 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.034 0.966 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.234 0.766 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.740 27.840 6.004 28.725 hybrid contribution 0.051 -0.041 -1.288 1.290 sum 3.792 27.800 4.716 28.451 Atomic orbital electron populations 1.22639 0.86393 1.04845 0.99151 1.61433 1.09013 1.10292 1.43166 1.22249 1.00834 0.89923 0.95464 1.21422 0.99868 0.79900 0.99025 1.45774 1.57799 1.14533 1.19135 1.17799 0.80458 0.84357 0.83253 1.90897 1.39935 1.74799 1.33413 1.20006 1.04305 0.95407 0.95051 1.21336 0.94513 0.96201 0.96635 1.21056 0.99950 0.93123 0.98460 1.21327 0.97269 1.01825 0.91596 1.17597 1.03547 0.87883 0.87182 1.91567 1.93455 1.71613 1.53604 1.17693 0.95163 0.91190 0.85375 1.91648 1.75813 1.88704 1.51800 1.21872 1.00678 0.94267 0.91591 1.19698 0.85562 0.86591 0.85296 1.90498 1.43826 1.80073 1.31560 1.41868 1.49473 1.07382 1.21390 1.19760 1.32850 0.82232 1.07916 0.87813 1.25257 0.96808 1.00588 0.95304 1.69613 1.38139 1.35684 1.10930 0.85802 0.78218 0.81904 0.78440 1.19197 1.20788 1.20753 0.96573 0.88314 0.91802 0.94464 0.90169 0.89807 0.90768 0.76613 0.83746 0.83332 0.83070 0.93315 0.89288 0.77516 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.96 60.06 0.54 0.81 16 2 N -0.51 -8.07 4.50 -244.37 -1.10 -9.17 16 3 C 0.04 0.48 5.07 -3.83 -0.02 0.46 16 4 C 0.12 1.36 5.60 -4.04 -0.02 1.34 16 5 N -0.72 -6.32 5.51 -61.30 -0.34 -6.66 16 6 C 0.56 6.32 7.77 -12.39 -0.10 6.23 16 7 O -0.51 -8.24 15.34 5.31 0.08 -8.16 16 8 C -0.14 -1.24 5.88 -104.92 -0.62 -1.86 16 9 C -0.07 -0.31 9.54 -39.19 -0.37 -0.68 16 10 C -0.11 -0.34 10.03 -39.65 -0.40 -0.74 16 11 C -0.10 -0.45 10.01 -39.45 -0.40 -0.85 16 12 C 0.06 0.46 7.30 -39.41 -0.29 0.18 16 13 F -0.12 -1.14 17.18 2.25 0.04 -1.10 16 14 C 0.13 1.29 7.29 -38.89 -0.28 1.01 16 15 F -0.10 -1.36 15.46 2.25 0.03 -1.32 16 16 C 0.05 0.79 5.45 -4.97 -0.03 0.77 16 17 C 0.44 10.18 7.47 -10.99 -0.08 10.10 16 18 O -0.58 -15.25 13.91 5.55 0.08 -15.17 16 19 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.18 13.05 55.50 0.72 -23.45 16 24 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 1.92 5.82 -51.93 -0.30 1.61 16 30 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 31 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 35 H 0.40 2.03 6.50 -40.82 -0.27 1.76 16 36 H 0.14 0.23 6.40 -52.49 -0.34 -0.11 16 37 H 0.15 0.01 8.06 -52.49 -0.42 -0.41 16 38 H 0.15 0.29 8.06 -52.49 -0.42 -0.13 16 39 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 40 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 41 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 42 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -35.07 366.28 -7.12 -42.18 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.77 Total: 6.63 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -2.30 Total: 8.91 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.77 Total: -53.32 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.16 Total: -23.33 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.07 Total: -2.43 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.07 -7.12 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267213790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.588 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds