Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00296 * 2 1 4 4 C 1.53002 * 109.46856 * 66.04906 * 3 2 1 5 5 N 1.46496 * 109.47428 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00266 * 180.02562 * 5 4 3 7 7 O 1.21561 * 120.00129 * 0.26795 * 6 5 4 8 8 C 1.47706 * 119.99736 * 179.97438 * 6 5 4 9 9 C 1.39683 * 120.15587 * 359.72129 * 8 6 5 10 10 C 1.37847 * 119.92203 * 179.78997 * 9 8 6 11 11 C 1.38447 * 120.24053 * 0.49008 * 10 9 8 12 12 C 1.38384 * 120.31751 * 359.73938 * 11 10 9 13 13 F 1.35097 * 119.96906 * 180.02562 * 12 11 10 14 14 C 1.38552 * 120.06960 * 0.02562 * 12 11 10 15 15 F 1.35095 * 120.12253 * 179.97438 * 14 12 11 16 16 C 1.46903 * 111.00085 * 236.04548 * 2 1 3 17 17 C 1.50698 * 109.47417 * 293.95828 * 16 2 1 18 18 O 1.21286 * 119.99840 * 359.97438 * 17 16 2 19 19 N 1.34777 * 119.99916 * 179.97438 * 17 16 2 20 20 C 1.37105 * 119.99685 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99871 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99533 * 180.02562 * 20 19 17 23 23 N 1.31404 * 120.00391 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99412 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47593 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47136 * 120.00306 * 24 22 20 27 27 H 1.48504 * 109.46593 * 239.99730 * 24 22 20 28 28 H 1.09002 * 109.46674 * 59.99909 * 1 2 3 29 29 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47107 * 299.99501 * 1 2 3 31 31 H 1.08992 * 109.47475 * 306.05034 * 3 2 1 32 32 H 1.09000 * 109.47229 * 186.04643 * 3 2 1 33 33 H 1.08996 * 109.47407 * 59.99657 * 4 3 2 34 34 H 1.09000 * 109.46986 * 299.99885 * 4 3 2 35 35 H 0.97008 * 119.99402 * 359.97438 * 5 4 3 36 36 H 1.07997 * 120.03690 * 359.97438 * 9 8 6 37 37 H 1.07993 * 119.88088 * 180.20303 * 10 9 8 38 38 H 1.07997 * 119.84304 * 179.76667 * 11 10 9 39 39 H 1.09004 * 109.46708 * 53.95743 * 16 2 1 40 40 H 1.09004 * 109.47324 * 173.95338 * 16 2 1 41 41 H 0.96998 * 120.00220 * 359.97438 * 19 17 16 42 42 H 0.97003 * 120.00439 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3183 5 7 2.1561 3.4252 1.3182 6 6 1.9556 4.2239 2.3851 7 8 1.3437 3.8077 3.3495 8 6 2.4849 5.6029 2.3851 9 6 3.1987 6.0805 1.2835 10 6 3.6869 7.3696 1.2868 11 6 3.4810 8.1903 2.3827 12 6 2.7793 7.7258 3.4813 13 9 2.5822 8.5328 4.5466 14 6 2.2788 6.4339 3.4898 15 9 1.5941 5.9792 4.5619 16 6 1.9955 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9730 18 8 1.0054 -2.5833 -0.0032 19 7 2.0180 -3.1179 -1.9034 20 6 1.6922 -4.4412 -1.7533 21 1 1.1299 -4.7643 -0.8897 22 6 2.0856 -5.3666 -2.7124 23 7 2.7703 -4.9735 -3.7628 24 14 1.6411 -7.1694 -2.5082 25 1 0.8739 -7.3507 -1.2498 26 1 0.8139 -7.6088 -3.6606 27 1 2.8829 -7.9820 -2.4518 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.5612 1.9273 -0.8308 32 1 3.0798 1.3443 -0.1082 33 1 2.0658 1.5014 2.1492 34 1 0.5473 2.0844 1.4266 35 1 2.6483 3.7557 0.5505 36 1 3.3654 5.4414 0.4290 37 1 4.2358 7.7392 0.4335 38 1 3.8696 9.1979 2.3800 39 1 1.5611 -0.3872 -2.0628 40 1 3.0798 -0.6611 -1.1757 41 1 2.5228 -2.8277 -2.6792 42 1 3.0446 -5.6194 -4.4325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267213790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = -145.340237 kcal Electronic energy + Delta-G solvation = -27968.158341 eV Core-core repulsion = 23390.714041 eV Total energy + Delta-G solvation = -4577.444300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.58688 -49.67024 -41.26248 -40.35826 -39.31749 -38.15700 -36.06707 -35.60647 -33.26273 -32.66485 -31.47642 -30.43904 -29.05296 -27.07147 -25.95483 -24.78270 -23.74820 -22.35882 -21.93129 -20.95001 -19.83929 -19.61021 -18.47386 -18.35616 -17.78685 -17.54250 -17.34372 -17.10406 -16.88162 -16.54928 -16.28759 -16.08459 -15.97278 -15.82857 -15.53795 -15.44080 -15.22789 -15.01691 -14.52789 -14.40819 -14.01148 -13.76729 -13.44746 -13.16470 -13.09894 -13.02665 -12.94181 -12.78538 -12.56199 -12.54208 -12.38197 -12.15271 -12.08842 -11.44998 -11.24290 -10.41861 -10.27056 -10.08577 -9.97267 -9.88045 -9.21705 -8.45082 -5.92885 -0.57315 -0.17617 1.37213 1.42763 1.56280 1.58956 1.75948 2.08975 2.30594 2.44563 2.65642 2.88615 3.22300 3.25128 3.37234 3.46487 3.62498 3.73011 3.84997 4.06714 4.08818 4.27857 4.38050 4.44750 4.49262 4.55784 4.64945 4.66149 4.67950 4.83886 4.86373 4.94745 5.00373 5.09978 5.21518 5.23647 5.43559 5.60794 5.87017 6.06402 6.18735 6.37353 6.63862 7.05045 7.16200 7.60092 8.16855 8.72426 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.034925 B = 0.001590 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.532110 B =17610.944868 C =18172.360841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.053 3.947 4 C 0.128 3.872 5 N -0.697 5.697 6 C 0.551 3.449 7 O -0.576 6.576 8 C -0.161 4.161 9 C -0.051 4.051 10 C -0.087 4.087 11 C -0.085 4.085 12 C 0.039 3.961 13 F -0.139 7.139 14 C 0.084 3.916 15 F -0.136 7.136 16 C 0.061 3.939 17 C 0.439 3.561 18 O -0.617 6.617 19 N -0.574 5.574 20 C -0.331 4.331 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.276 1.276 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.421 0.579 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.183 0.817 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.397 0.603 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.685 31.071 1.101 31.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.075 4.075 4 C 0.004 3.996 5 N -0.351 5.351 6 C 0.339 3.661 7 O -0.456 6.456 8 C -0.165 4.165 9 C -0.070 4.070 10 C -0.104 4.104 11 C -0.103 4.103 12 C 0.019 3.981 13 F -0.118 7.118 14 C 0.063 3.937 15 F -0.115 7.115 16 C -0.070 4.070 17 C 0.226 3.774 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.201 1.201 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.260 0.740 36 H 0.200 0.800 37 H 0.214 0.786 38 H 0.201 0.799 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.231 0.769 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.023 30.173 2.759 30.892 hybrid contribution -0.603 -0.640 -0.322 0.937 sum 5.419 29.533 2.437 30.125 Atomic orbital electron populations 1.22464 0.86993 1.02351 1.00600 1.61297 1.08828 1.13289 1.43214 1.22256 1.02214 0.87322 0.95674 1.21170 0.98871 0.80909 0.98675 1.45491 1.57125 1.13218 1.19293 1.18317 0.79541 0.85536 0.82724 1.90865 1.42785 1.76172 1.35740 1.19905 1.06363 0.93796 0.96419 1.21810 0.92086 0.97333 0.95729 1.21637 0.98122 0.91812 0.98867 1.21814 0.94972 1.03323 0.90212 1.17938 1.04916 0.87154 0.88141 1.91520 1.93784 1.71807 1.54686 1.18238 0.97035 0.92870 0.85533 1.91545 1.77026 1.89307 1.53581 1.21740 1.02478 0.89691 0.93042 1.20892 0.83649 0.89036 0.83805 1.90483 1.45205 1.81534 1.33112 1.41923 1.50176 1.06937 1.22195 1.19665 1.34276 0.84204 1.07936 0.90573 1.25966 0.96349 1.04076 0.94756 1.69660 1.38188 1.37007 1.11179 0.84916 0.78228 0.77306 0.78159 1.20088 1.19604 1.19657 0.94404 0.92677 0.91070 0.91452 0.87753 0.92522 0.92314 0.73976 0.80047 0.78562 0.79941 0.90692 0.86449 0.76889 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 8.96 127.69 1.14 1.89 16 2 N -0.54 -16.09 4.50 -927.05 -4.17 -20.26 16 3 C 0.05 0.98 5.07 86.30 0.44 1.42 16 4 C 0.13 2.75 5.60 86.38 0.48 3.24 16 5 N -0.70 -10.91 5.51 -466.12 -2.57 -13.48 16 6 C 0.55 12.63 7.77 86.75 0.67 13.31 16 7 O -0.58 -19.89 15.34 -3.91 -0.06 -19.95 16 8 C -0.16 -2.64 5.88 -20.06 -0.12 -2.76 16 9 C -0.05 -0.24 9.54 22.53 0.21 -0.03 16 10 C -0.09 -0.06 10.03 22.23 0.22 0.16 16 11 C -0.08 -0.45 10.01 22.35 0.22 -0.22 16 12 C 0.04 0.60 7.30 22.38 0.16 0.76 16 13 F -0.14 -2.67 17.18 44.97 0.77 -1.90 16 14 C 0.08 1.81 7.29 22.71 0.17 1.97 16 15 F -0.14 -4.11 15.46 44.97 0.70 -3.41 16 16 C 0.06 1.92 5.45 85.56 0.47 2.39 16 17 C 0.44 20.27 7.47 87.66 0.66 20.92 16 18 O -0.62 -33.87 13.91 -3.05 -0.04 -33.91 16 19 N -0.57 -28.73 5.29 -306.98 -1.62 -30.35 16 20 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 21 H 0.08 4.63 7.16 -2.91 -0.02 4.60 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 23 N -0.92 -48.68 13.05 21.66 0.28 -48.39 16 24 Si 0.99 42.79 29.55 68.60 2.03 44.81 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 2.21 5.82 -2.39 -0.01 2.19 16 30 H 0.07 2.05 6.47 -2.39 -0.02 2.04 16 31 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 32 H 0.10 1.48 7.93 -2.39 -0.02 1.46 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.46 6.55 -2.39 -0.02 1.44 16 35 H 0.42 2.50 6.50 -92.70 -0.60 1.90 16 36 H 0.18 -0.58 6.40 -2.91 -0.02 -0.60 16 37 H 0.20 -1.56 8.06 -2.91 -0.02 -1.58 16 38 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 39 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 40 H 0.12 3.05 7.93 -2.38 -0.02 3.03 16 41 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 42 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -84.93 366.28 1.10 -83.84 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.23 Total: 17.95 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 6.01 Total: 25.06 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -8.08 Total: -112.48 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.10 Total: -53.86 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 1.47 Total: -5.31 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -84.93 1.10 -83.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267213790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.505 kcal (2) G-P(sol) polarization free energy of solvation -84.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds