Wall clock time and date at job start Sat Apr 11 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99934 * 2 1 4 4 C 1.38836 * 120.00605 * 179.97438 * 2 1 3 5 5 N 1.30638 * 126.38401 * 0.02940 * 4 2 1 6 6 O 1.21289 * 110.12360 * 179.97438 * 5 4 2 7 7 C 1.33648 * 109.98270 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.46136 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.47109 * 270.02650 * 8 7 6 10 10 C 1.47474 * 110.99751 * 265.97224 * 9 8 7 11 11 C 1.53514 * 87.93334 * 221.29509 * 10 9 8 12 12 N 1.46500 * 114.34467 * 139.68020 * 11 10 9 13 13 C 1.34774 * 119.99440 * 111.08093 * 12 11 10 14 14 O 1.21274 * 120.00515 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99576 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47136 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00120 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99971 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99712 * 179.97438 * 17 16 15 20 20 N 1.31631 * 120.00432 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99749 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46998 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46937 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47477 * 240.00175 * 21 19 17 25 25 C 1.47478 * 111.00052 * 169.99720 * 9 8 7 26 26 N 1.31041 * 107.07743 * 0.24016 * 7 6 5 27 27 H 1.09000 * 109.46395 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47167 * 300.00208 * 1 2 3 29 29 H 1.08998 * 109.46819 * 60.00542 * 1 2 3 30 30 H 1.08998 * 109.46873 * 270.00152 * 3 2 1 31 31 H 1.09005 * 109.47013 * 29.99521 * 3 2 1 32 32 H 1.08999 * 109.47590 * 149.99332 * 3 2 1 33 33 H 1.08992 * 109.46894 * 150.02385 * 8 7 6 34 34 H 1.09004 * 109.47113 * 30.02536 * 8 7 6 35 35 H 1.08998 * 113.47885 * 336.06194 * 10 9 8 36 36 H 1.09004 * 113.47794 * 106.53057 * 10 9 8 37 37 H 1.08995 * 114.17336 * 272.38170 * 11 10 9 38 38 H 0.96996 * 119.99885 * 291.08029 * 12 11 10 39 39 H 1.08994 * 109.47484 * 299.99995 * 15 13 12 40 40 H 1.09000 * 109.46795 * 60.00086 * 15 13 12 41 41 H 0.96999 * 119.99816 * 180.02562 * 20 19 17 42 42 H 1.09001 * 113.47916 * 253.46887 * 25 9 8 43 43 H 1.09005 * 113.47385 * 23.87749 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1593 -1.2023 0.0005 5 7 1.6361 -2.3993 0.0005 6 8 2.5125 -3.2378 0.0006 7 6 3.7108 -2.6460 0.0012 8 6 5.0505 -3.3361 0.0020 9 7 5.4848 -3.5608 1.3873 10 6 6.3510 -2.4625 1.8542 11 6 7.2378 -3.5212 2.5247 12 7 8.6758 -3.2682 2.4050 13 6 9.3940 -2.9336 3.4952 14 8 8.8499 -2.8415 4.5751 15 6 10.8734 -2.6739 3.3723 16 16 11.5486 -2.2498 4.9972 17 6 13.2405 -2.0039 4.5709 18 1 13.5630 -2.1277 3.5477 19 6 14.1585 -1.6501 5.5500 20 7 13.7654 -1.4988 6.7971 21 14 15.9520 -1.3888 5.0979 22 1 16.1340 -1.6179 3.6419 23 1 16.3493 0.0023 5.4330 24 1 16.7985 -2.3423 5.8591 25 6 6.6683 -4.4395 1.4342 26 7 3.5011 -1.3525 0.0068 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 2.3791 1.5834 -1.0277 31 1 1.6083 2.0285 0.5138 32 1 3.1499 1.1386 0.5139 33 1 5.7814 -2.7112 -0.5111 34 1 4.9663 -4.2936 -0.5122 35 1 6.8490 -1.9281 1.0452 36 1 5.8613 -1.7944 2.5628 37 1 6.9300 -3.7856 3.5363 38 1 9.1109 -3.3415 1.5412 39 1 11.3692 -3.5681 2.9946 40 1 11.0410 -1.8467 2.6825 41 1 14.4069 -1.2512 7.4812 42 1 6.4474 -5.4470 1.7867 43 1 7.2503 -4.4336 0.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267636468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:55 Heat of formation + Delta-G solvation = 98.686364 kcal Electronic energy + Delta-G solvation = -25912.882775 eV Core-core repulsion = 21932.153400 eV Total energy + Delta-G solvation = -3980.729375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.54643 -40.84405 -38.69265 -37.85807 -35.32955 -34.09631 -32.67429 -32.44722 -30.36805 -29.00988 -28.38844 -26.39082 -26.14220 -25.56342 -24.96635 -23.16410 -21.39330 -20.53213 -20.49519 -18.27708 -18.18068 -17.84296 -16.94483 -16.51073 -16.36549 -16.06794 -15.48369 -15.37504 -15.32470 -14.82553 -14.69399 -14.52851 -14.28601 -13.57793 -13.26605 -13.07765 -13.03696 -13.00976 -12.58226 -12.55190 -12.52582 -12.26449 -12.15089 -12.05925 -11.49718 -11.19966 -11.11085 -11.08518 -11.04053 -10.79197 -10.66989 -9.83296 -9.72504 -9.35436 -9.10039 -8.98748 -8.41970 -8.25827 -6.52437 -6.23787 -3.94547 0.95682 2.12497 2.20387 2.57074 2.93018 2.97066 3.20189 3.24931 3.29689 3.45501 3.61273 3.81068 4.18030 4.19108 4.25862 4.37219 4.49379 4.65295 4.81769 4.83215 4.88001 4.90319 4.97147 5.08346 5.11631 5.14121 5.16811 5.26581 5.30812 5.37531 5.51275 5.55961 5.65314 5.75097 5.84271 5.87543 6.09620 6.34361 6.44136 6.53832 6.71843 7.57523 7.59831 8.14006 8.33302 8.52556 9.21761 10.83660 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.001695 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.241248 B =16512.596162 C =17174.009183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.591 5.591 3 C 0.107 3.893 4 C 0.426 3.574 5 N -0.438 5.438 6 O 0.067 5.933 7 C 0.217 3.783 8 C 0.111 3.889 9 N -0.464 5.464 10 C -0.016 4.016 11 C 0.127 3.873 12 N -0.728 5.728 13 C 0.535 3.465 14 O -0.512 6.512 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.007 4.007 26 N -0.502 5.502 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.399 0.601 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.102 0.898 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.333 -1.256 -19.333 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.319 5.319 3 C -0.035 4.035 4 C 0.066 3.934 5 N -0.166 5.166 6 O 0.023 5.977 7 C -0.005 4.005 8 C -0.019 4.019 9 N -0.188 5.188 10 C -0.146 4.146 11 C 0.020 3.980 12 N -0.382 5.382 13 C 0.321 3.679 14 O -0.385 6.385 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.136 4.136 26 N -0.244 5.244 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.149 0.851 38 H 0.234 0.766 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.588 -0.902 -16.993 29.903 hybrid contribution 2.611 0.360 -2.546 3.664 sum -21.978 -0.541 -19.540 29.413 Atomic orbital electron populations 1.21675 0.77058 1.03702 1.01489 1.45085 1.05090 1.00291 1.81432 1.21625 0.97338 0.82877 1.01698 1.21982 0.85642 0.88141 0.97633 1.74786 1.11798 0.97933 1.32111 1.85247 1.12272 1.33056 1.67117 1.28036 0.91415 0.86850 0.94176 1.21127 0.86521 1.00802 0.93469 1.68833 1.25123 1.08573 1.16302 1.24618 0.93736 0.95706 1.00518 1.22432 0.80274 0.94525 1.00777 1.45931 1.07890 1.72948 1.11430 1.20376 0.88733 0.75199 0.83594 1.90715 1.72028 1.49003 1.26784 1.23541 0.93738 1.04792 1.08413 1.85432 1.06227 1.89784 1.01890 1.22905 0.93370 1.54679 0.97445 0.90849 1.24996 0.99464 0.94675 0.94460 1.70026 1.35100 1.44466 1.00634 0.86115 0.82741 0.78030 0.78591 1.19625 1.20574 1.20551 1.24340 0.90369 0.99686 0.99194 1.71800 1.12447 1.15464 1.24647 0.90152 0.92017 0.92125 0.93028 0.90872 0.90478 0.88703 0.86770 0.90090 0.88816 0.85122 0.76641 0.89096 0.89153 0.92209 0.88010 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 10.77 59.85 0.64 1.33 16 2 N -0.59 -5.53 3.39 -193.15 -0.65 -6.18 16 3 C 0.11 0.75 10.64 59.85 0.64 1.39 16 4 C 0.43 5.04 8.35 -321.18 -2.68 2.36 16 5 N -0.44 -5.46 11.27 28.63 0.32 -5.13 16 6 O 0.07 0.77 11.29 18.09 0.20 0.97 16 7 C 0.22 2.16 8.09 -12.99 -0.11 2.06 16 8 C 0.11 0.72 5.44 -4.97 -0.03 0.70 16 9 N -0.46 -3.85 6.32 -246.09 -1.55 -5.40 16 10 C -0.02 -0.15 7.53 -7.54 -0.06 -0.21 16 11 C 0.13 1.30 4.59 -67.71 -0.31 0.99 16 12 N -0.73 -8.37 5.39 -53.54 -0.29 -8.66 16 13 C 0.53 9.26 7.85 -10.98 -0.09 9.18 16 14 O -0.51 -11.11 15.45 5.56 0.09 -11.02 16 15 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 16 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 17 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 21 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.01 -0.04 7.45 -7.54 -0.06 -0.10 16 26 N -0.50 -5.79 10.95 -12.67 -0.14 -5.93 16 27 H 0.08 0.62 7.20 -51.93 -0.37 0.25 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.08 0.63 7.68 -51.93 -0.40 0.24 16 33 H 0.10 0.49 7.30 -51.93 -0.38 0.11 16 34 H 0.11 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.08 0.66 7.42 -51.93 -0.39 0.28 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.13 1.67 7.45 -51.93 -0.39 1.29 16 38 H 0.40 3.27 8.76 -40.82 -0.36 2.91 16 39 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 40 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.35 7.90 -51.93 -0.41 -0.06 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -36.83 383.55 -10.40 -47.23 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.03 Total: -1.08 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.62 Total: 2.26 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -1.58 Total: -56.43 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.29 Total: -10.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.83 -10.40 -47.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267636468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.920 kcal (2) G-P(sol) polarization free energy of solvation -36.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds