Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99934 * 2 1 4 4 C 1.38836 * 120.00605 * 179.97438 * 2 1 3 5 5 N 1.30638 * 126.38401 * 0.02940 * 4 2 1 6 6 O 1.21289 * 110.12360 * 179.97438 * 5 4 2 7 7 C 1.33648 * 109.98270 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.46136 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.47109 * 270.02650 * 8 7 6 10 10 C 1.47474 * 110.99751 * 265.97224 * 9 8 7 11 11 C 1.53514 * 87.93334 * 221.29509 * 10 9 8 12 12 N 1.46500 * 114.34467 * 139.68020 * 11 10 9 13 13 C 1.34774 * 119.99440 * 111.08093 * 12 11 10 14 14 O 1.21274 * 120.00515 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99576 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47136 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00120 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99971 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99712 * 179.97438 * 17 16 15 20 20 N 1.31631 * 120.00432 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99749 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46998 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46937 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47477 * 240.00175 * 21 19 17 25 25 C 1.47478 * 111.00052 * 169.99720 * 9 8 7 26 26 N 1.31041 * 107.07743 * 0.24016 * 7 6 5 27 27 H 1.09000 * 109.46395 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47167 * 300.00208 * 1 2 3 29 29 H 1.08998 * 109.46819 * 60.00542 * 1 2 3 30 30 H 1.08998 * 109.46873 * 270.00152 * 3 2 1 31 31 H 1.09005 * 109.47013 * 29.99521 * 3 2 1 32 32 H 1.08999 * 109.47590 * 149.99332 * 3 2 1 33 33 H 1.08992 * 109.46894 * 150.02385 * 8 7 6 34 34 H 1.09004 * 109.47113 * 30.02536 * 8 7 6 35 35 H 1.08998 * 113.47885 * 336.06194 * 10 9 8 36 36 H 1.09004 * 113.47794 * 106.53057 * 10 9 8 37 37 H 1.08995 * 114.17336 * 272.38170 * 11 10 9 38 38 H 0.96996 * 119.99885 * 291.08029 * 12 11 10 39 39 H 1.08994 * 109.47484 * 299.99995 * 15 13 12 40 40 H 1.09000 * 109.46795 * 60.00086 * 15 13 12 41 41 H 0.96999 * 119.99816 * 180.02562 * 20 19 17 42 42 H 1.09001 * 113.47916 * 253.46887 * 25 9 8 43 43 H 1.09005 * 113.47385 * 23.87749 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1593 -1.2023 0.0005 5 7 1.6361 -2.3993 0.0005 6 8 2.5125 -3.2378 0.0006 7 6 3.7108 -2.6460 0.0012 8 6 5.0505 -3.3361 0.0020 9 7 5.4848 -3.5608 1.3873 10 6 6.3510 -2.4625 1.8542 11 6 7.2378 -3.5212 2.5247 12 7 8.6758 -3.2682 2.4050 13 6 9.3940 -2.9336 3.4952 14 8 8.8499 -2.8415 4.5751 15 6 10.8734 -2.6739 3.3723 16 16 11.5486 -2.2498 4.9972 17 6 13.2405 -2.0039 4.5709 18 1 13.5630 -2.1277 3.5477 19 6 14.1585 -1.6501 5.5500 20 7 13.7654 -1.4988 6.7971 21 14 15.9520 -1.3888 5.0979 22 1 16.1340 -1.6179 3.6419 23 1 16.3493 0.0023 5.4330 24 1 16.7985 -2.3423 5.8591 25 6 6.6683 -4.4395 1.4342 26 7 3.5011 -1.3525 0.0068 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 2.3791 1.5834 -1.0277 31 1 1.6083 2.0285 0.5138 32 1 3.1499 1.1386 0.5139 33 1 5.7814 -2.7112 -0.5111 34 1 4.9663 -4.2936 -0.5122 35 1 6.8490 -1.9281 1.0452 36 1 5.8613 -1.7944 2.5628 37 1 6.9300 -3.7856 3.5363 38 1 9.1109 -3.3415 1.5412 39 1 11.3692 -3.5681 2.9946 40 1 11.0410 -1.8467 2.6825 41 1 14.4069 -1.2512 7.4812 42 1 6.4474 -5.4470 1.7867 43 1 7.2503 -4.4336 0.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267636468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = 69.063065 kcal Electronic energy + Delta-G solvation = -25914.167338 eV Core-core repulsion = 21932.153400 eV Total energy + Delta-G solvation = -3982.013937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.34684 -41.65383 -39.95924 -38.54565 -36.11320 -35.13746 -34.56237 -33.52177 -31.41692 -30.06683 -29.04938 -27.65765 -27.04590 -26.81324 -25.81447 -23.92338 -22.20094 -21.71353 -21.28650 -19.77117 -19.08499 -18.91097 -17.96159 -17.69174 -17.10944 -16.86277 -16.82405 -16.47927 -16.19351 -16.05285 -15.93694 -15.62316 -15.21379 -14.84149 -14.59750 -14.03502 -13.86795 -13.74035 -13.54869 -13.48460 -13.13750 -13.12404 -13.07782 -12.93745 -12.90327 -12.83653 -12.57383 -12.35320 -11.99722 -11.88763 -11.69044 -11.45495 -11.14124 -10.98493 -10.23930 -10.15167 -10.02723 -9.11000 -8.64100 -8.32912 -6.10500 0.19665 1.28955 1.38478 1.42969 1.48808 1.49737 1.59962 1.61396 1.91556 2.24237 2.30232 2.82015 3.01572 3.04944 3.35232 3.47029 3.58066 3.73578 3.94129 3.97931 4.05278 4.22017 4.29205 4.36120 4.36404 4.39458 4.42217 4.55920 4.58144 4.64823 4.71930 4.75878 4.78478 4.82729 4.94002 4.95940 5.13322 5.44397 5.45612 5.79083 5.84447 6.01031 6.22117 6.54087 7.08845 7.28576 7.36088 8.76463 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.001695 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.241248 B =16512.596162 C =17174.009183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.596 5.596 3 C 0.106 3.894 4 C 0.412 3.588 5 N -0.462 5.462 6 O 0.056 5.944 7 C 0.222 3.778 8 C 0.112 3.888 9 N -0.481 5.481 10 C -0.009 4.009 11 C 0.112 3.888 12 N -0.697 5.697 13 C 0.537 3.463 14 O -0.566 6.566 15 C -0.129 4.129 16 S -0.157 6.157 17 C -0.544 4.544 18 H 0.085 0.915 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.255 1.255 23 H -0.276 1.276 24 H -0.275 1.275 25 C 0.016 3.984 26 N -0.523 5.523 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.421 0.579 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.270 0.730 42 H 0.111 0.889 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.647 -1.642 -22.704 31.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.325 5.325 3 C -0.036 4.036 4 C 0.052 3.948 5 N -0.193 5.193 6 O 0.014 5.986 7 C 0.000 4.000 8 C -0.018 4.018 9 N -0.205 5.205 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.351 5.351 13 C 0.323 3.677 14 O -0.444 6.444 15 C -0.280 4.280 16 S 0.070 5.930 17 C -0.692 4.692 18 H 0.103 0.897 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.820 3.180 22 H -0.178 1.178 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.112 4.112 26 N -0.265 5.265 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.134 0.866 34 H 0.166 0.834 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.259 0.741 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.129 0.871 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.920 -1.303 -20.437 31.489 hybrid contribution 2.257 0.478 -1.574 2.793 sum -21.663 -0.826 -22.012 30.895 Atomic orbital electron populations 1.21818 0.75774 1.03307 1.03213 1.45509 1.06107 1.00131 1.80734 1.21730 0.96954 0.82525 1.02352 1.22401 0.86075 0.88880 0.97455 1.74759 1.12564 0.98330 1.33695 1.85198 1.12749 1.33066 1.67575 1.28786 0.92081 0.86667 0.92461 1.21450 0.84939 1.02703 0.92703 1.68775 1.25700 1.08191 1.17880 1.24536 0.93484 0.95480 1.00444 1.22483 0.79099 0.97074 1.00796 1.45575 1.08253 1.70568 1.10714 1.20117 0.88233 0.75225 0.84166 1.90708 1.72689 1.51814 1.29143 1.23380 0.94786 1.06414 1.03449 1.85645 1.07602 1.90510 1.09209 1.23248 0.93517 1.54373 0.98021 0.89712 1.26129 1.04776 0.94126 0.94221 1.70195 1.36932 1.45735 1.02026 0.84908 0.76034 0.77938 0.79078 1.17846 1.20126 1.20045 1.24313 0.89172 0.98812 0.98938 1.71809 1.12483 1.16459 1.25705 0.91596 0.90489 0.90109 0.92185 0.88473 0.92096 0.86555 0.83419 0.88145 0.91747 0.88347 0.74065 0.86810 0.87005 0.92072 0.87096 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.25 10.77 127.77 1.38 2.62 16 2 N -0.60 -10.80 3.39 -767.80 -2.60 -13.40 16 3 C 0.11 1.39 10.64 127.77 1.36 2.75 16 4 C 0.41 9.71 8.35 260.92 2.18 11.88 16 5 N -0.46 -11.56 11.27 -66.69 -0.75 -12.31 16 6 O 0.06 1.26 11.29 74.81 0.84 2.10 16 7 C 0.22 4.12 8.09 88.36 0.71 4.84 16 8 C 0.11 1.09 5.44 85.56 0.47 1.55 16 9 N -0.48 -6.81 6.32 -932.48 -5.89 -12.70 16 10 C -0.01 -0.16 7.53 83.58 0.63 0.47 16 11 C 0.11 2.14 4.59 45.45 0.21 2.35 16 12 N -0.70 -14.41 5.39 -441.69 -2.38 -16.79 16 13 C 0.54 18.27 7.85 87.66 0.69 18.96 16 14 O -0.57 -25.38 15.45 -3.01 -0.05 -25.43 16 15 C -0.13 -4.76 6.16 71.24 0.44 -4.33 16 16 S -0.16 -8.52 20.57 -56.49 -1.16 -9.69 16 17 C -0.54 -30.42 9.50 67.95 0.65 -29.77 16 18 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 19 C 0.01 0.68 5.49 84.86 0.47 1.14 16 20 N -0.91 -55.69 13.22 21.65 0.29 -55.40 16 21 Si 1.00 42.94 29.55 68.60 2.03 44.97 16 22 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 23 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 C 0.02 0.16 7.45 83.58 0.62 0.78 16 26 N -0.52 -11.76 10.95 -311.44 -3.41 -15.17 16 27 H 0.07 1.02 7.20 -2.39 -0.02 1.00 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 0.77 8.07 -2.38 -0.02 0.75 16 32 H 0.06 0.99 7.68 -2.39 -0.02 0.98 16 33 H 0.12 0.69 7.30 -2.39 -0.02 0.67 16 34 H 0.15 0.48 8.08 -2.38 -0.02 0.46 16 35 H 0.10 1.34 7.42 -2.39 -0.02 1.32 16 36 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.10 2.60 7.45 -2.39 -0.02 2.58 16 38 H 0.42 5.13 8.76 -92.71 -0.81 4.32 16 39 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 40 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 41 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.12 0.31 7.90 -2.38 -0.02 0.29 16 Total: -1.00 -85.67 383.55 -3.06 -88.73 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.23 Total: 11.86 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 9.79 Total: 13.23 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -14.75 Total: -125.78 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.80 Total: -23.33 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -85.67 -3.06 -88.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267636468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.795 kcal (2) G-P(sol) polarization free energy of solvation -85.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds