Wall clock time and date at job start Sat Apr 11 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40474 * 126.86221 * 2 1 4 4 H 0.96993 * 126.64437 * 359.92619 * 3 2 1 5 5 C 1.35151 * 106.70204 * 179.97438 * 3 2 1 6 6 C 1.50703 * 125.53642 * 179.97438 * 5 3 2 7 7 N 1.46906 * 109.47109 * 180.02562 * 6 5 3 8 8 C 1.47474 * 110.99751 * 265.97224 * 7 6 5 9 9 C 1.53514 * 87.93334 * 221.29509 * 8 7 6 10 10 C 1.52994 * 114.34602 * 139.67927 * 9 8 7 11 11 N 1.46503 * 109.46956 * 91.07883 * 10 9 8 12 12 C 1.34777 * 120.00152 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99810 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99937 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.46989 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99879 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00472 * 359.97438 * 16 15 14 18 18 C 1.38804 * 119.99727 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00286 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99551 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47396 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47002 * 119.99893 * 20 18 16 23 23 H 1.48495 * 109.47071 * 239.99541 * 20 18 16 24 24 C 1.47478 * 111.00052 * 169.99720 * 7 6 5 25 25 N 1.30732 * 108.92439 * 0.22780 * 5 3 2 26 26 C 1.34452 * 109.94242 * 359.62320 * 25 5 3 27 27 O 1.21725 * 125.92079 * 180.15581 * 26 25 5 28 28 H 1.09008 * 109.47130 * 90.00295 * 1 2 3 29 29 H 1.09001 * 109.47561 * 209.99907 * 1 2 3 30 30 H 1.08994 * 109.47460 * 330.00357 * 1 2 3 31 31 H 1.08992 * 109.46894 * 59.99836 * 6 5 3 32 32 H 1.09004 * 109.47113 * 299.99986 * 6 5 3 33 33 H 1.08998 * 113.47885 * 336.06194 * 8 7 6 34 34 H 1.09004 * 113.47794 * 106.53057 * 8 7 6 35 35 H 1.08995 * 114.17336 * 272.38170 * 9 8 7 36 36 H 1.08997 * 109.47334 * 211.07535 * 10 9 8 37 37 H 1.08998 * 109.47235 * 331.08071 * 10 9 8 38 38 H 0.97003 * 120.00093 * 0.02562 * 11 10 9 39 39 H 1.08995 * 109.47369 * 300.00388 * 14 12 11 40 40 H 1.08998 * 109.47119 * 60.00368 * 14 12 11 41 41 H 0.97001 * 120.00683 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.47916 * 253.46887 * 24 7 6 43 43 H 1.09005 * 113.47385 * 23.87749 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3076 1.1239 0.0000 4 1 2.0322 2.0539 -0.0010 5 6 3.5763 0.6581 0.0006 6 6 4.8212 1.5074 0.0002 7 7 6.0063 0.6393 0.0005 8 6 6.4898 0.4054 1.3739 9 6 7.9194 0.5694 0.8391 10 6 8.8512 1.3581 1.7613 11 7 9.5378 0.4344 2.6677 12 6 10.4146 0.9077 3.5752 13 8 10.6349 2.0985 3.6418 14 6 11.1214 -0.0426 4.5071 15 16 12.2236 0.8904 5.5983 16 6 12.9000 -0.4288 6.5505 17 1 12.5920 -1.4461 6.3593 18 6 13.8280 -0.1604 7.5473 19 7 14.2031 1.0794 7.7808 20 14 14.5446 -1.5590 8.5573 21 1 13.9641 -2.8474 8.1006 22 1 16.0188 -1.5912 8.3822 23 1 14.2209 -1.3503 9.9914 24 6 7.2339 1.4207 -0.2390 25 7 3.5481 -0.6489 -0.0040 26 6 2.2747 -1.0801 0.0006 27 8 1.9144 -2.2429 0.0009 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 4.8315 2.1372 0.8897 32 1 4.8320 2.1361 -0.8902 33 1 6.1968 1.1858 2.0762 34 1 6.2772 -0.5974 1.7443 35 1 8.3641 -0.3523 0.4640 36 1 9.5875 1.8937 1.1622 37 1 8.2679 2.0717 2.3433 38 1 9.3620 -0.5181 2.6142 39 1 10.3854 -0.5783 5.1066 40 1 11.7045 -0.7561 3.9249 41 1 14.8519 1.2670 8.4770 42 1 7.6519 1.2782 -1.2356 43 1 7.1391 2.4722 0.0319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268511908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:10 Heat of formation + Delta-G solvation = 72.401247 kcal Electronic energy + Delta-G solvation = -25637.494615 eV Core-core repulsion = 21655.625433 eV Total energy + Delta-G solvation = -3981.869183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.69471 -40.76588 -38.96413 -37.60713 -35.11495 -34.41752 -32.42153 -32.25716 -31.55112 -29.69406 -27.84548 -26.50043 -26.29043 -25.45278 -23.62539 -22.08817 -21.38810 -20.65456 -19.86072 -18.91800 -17.85335 -17.13813 -16.84550 -16.48683 -16.25427 -16.20131 -15.65635 -15.58762 -15.15284 -14.97533 -14.79407 -14.41051 -14.00403 -13.87820 -13.54294 -13.40765 -13.13165 -13.07626 -12.90737 -12.60158 -12.28447 -11.86409 -11.71844 -11.44833 -11.38140 -11.06032 -11.00807 -10.85247 -10.73883 -10.49896 -10.17311 -9.79668 -9.50224 -9.34963 -9.06903 -8.96025 -8.88122 -8.22475 -6.49086 -6.21050 -3.91307 0.82595 0.91033 2.94325 3.03985 3.08985 3.10170 3.22749 3.29318 3.34041 3.41030 3.67015 3.70853 4.06297 4.21506 4.23573 4.26387 4.33289 4.45110 4.61334 4.70890 4.87654 4.88580 4.91912 4.96070 5.14448 5.20086 5.25109 5.31182 5.33870 5.49735 5.56857 5.59594 5.72351 5.75879 5.91158 5.94320 6.16755 6.39254 6.60667 6.62393 7.57200 7.61236 7.71210 7.85901 8.36627 8.61415 9.24751 10.86454 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.001595 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.816502 B =17545.748092 C =18323.912188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.449 5.449 3 N -0.503 5.503 4 H 0.444 0.556 5 C 0.402 3.598 6 C 0.083 3.917 7 N -0.446 5.446 8 C 0.004 3.996 9 C -0.125 4.125 10 C 0.133 3.867 11 N -0.738 5.738 12 C 0.532 3.468 13 O -0.520 6.520 14 C -0.154 4.154 15 S -0.062 6.062 16 C -0.535 4.535 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.007 3.993 25 N -0.539 5.539 26 C 0.632 3.368 27 O -0.534 6.534 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.096 0.904 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.249 5.073 -19.459 33.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.280 5.280 3 N -0.235 5.235 4 H 0.291 0.709 5 C 0.127 3.873 6 C -0.048 4.048 7 N -0.167 5.167 8 C -0.125 4.125 9 C -0.145 4.145 10 C 0.008 3.992 11 N -0.392 5.392 12 C 0.318 3.682 13 O -0.394 6.394 14 C -0.305 4.305 15 S 0.165 5.835 16 C -0.683 4.683 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.122 4.122 25 N -0.287 5.287 26 C 0.331 3.669 27 O -0.405 6.405 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.955 5.134 -19.700 32.986 hybrid contribution -0.875 -0.904 1.033 1.627 sum -26.830 4.231 -18.667 32.958 Atomic orbital electron populations 1.21852 0.73418 1.04650 1.03274 1.49559 1.04728 0.99365 1.74332 1.44826 1.02773 1.03530 1.72410 0.70861 1.23731 0.84832 0.91671 0.87065 1.21411 0.86437 0.92658 1.04333 1.68923 0.99097 1.30326 1.18394 1.24132 0.93732 1.03941 0.90690 1.22971 0.94538 1.00561 0.96383 1.21217 0.94793 0.92060 0.91120 1.45985 1.45250 1.10751 1.37262 1.20308 0.78402 0.89374 0.80095 1.90696 1.62779 1.16501 1.69468 1.23533 1.03285 1.02394 1.01238 1.85367 1.48758 1.11124 1.38294 1.22920 1.29321 0.94361 1.21691 0.90831 1.24988 0.95666 0.96423 0.96499 1.70021 1.30862 1.18246 1.31214 0.86119 0.78758 0.81162 0.79480 1.19584 1.20573 1.20590 1.23905 0.90273 0.96950 1.01033 1.71986 1.18730 1.07676 1.30290 1.18516 0.83303 0.84851 0.80234 1.90974 1.78567 1.14543 1.56460 0.91177 0.88189 0.90238 0.89445 0.86782 0.90725 0.88616 0.86843 0.91104 0.91614 0.76579 0.89187 0.89150 0.92258 0.88604 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.42 11.46 59.84 0.69 1.10 16 2 N -0.45 -3.46 4.06 -72.07 -0.29 -3.75 16 3 N -0.50 -2.13 7.36 32.73 0.24 -1.89 16 4 H 0.44 -0.15 8.96 -182.32 -1.63 -1.78 16 5 C 0.40 2.68 8.02 -155.12 -1.24 1.44 16 6 C 0.08 0.30 5.44 -4.97 -0.03 0.27 16 7 N -0.45 -2.85 6.03 -246.07 -1.48 -4.34 16 8 C 0.00 0.02 7.29 -7.54 -0.05 -0.03 16 9 C -0.13 -0.83 4.08 -90.09 -0.37 -1.20 16 10 C 0.13 1.27 5.59 -4.04 -0.02 1.24 16 11 N -0.74 -8.97 5.56 -60.30 -0.33 -9.31 16 12 C 0.53 9.51 7.85 -10.98 -0.09 9.42 16 13 O -0.52 -11.38 15.86 5.56 0.09 -11.29 16 14 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.53 -15.20 9.50 30.94 0.29 -14.90 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 20 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 C 0.01 0.04 7.26 -7.54 -0.05 -0.02 16 25 N -0.54 -6.45 10.83 -13.83 -0.15 -6.60 16 26 C 0.63 8.28 8.97 -87.01 -0.78 7.50 16 27 O -0.53 -9.18 17.91 5.17 0.09 -9.09 16 28 H 0.07 0.20 8.14 -51.92 -0.42 -0.23 16 29 H 0.10 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.09 0.12 7.30 -51.93 -0.38 -0.26 16 32 H 0.11 0.10 8.08 -51.93 -0.42 -0.32 16 33 H 0.07 0.44 7.16 -51.93 -0.37 0.06 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 38 H 0.40 3.85 8.47 -40.82 -0.35 3.50 16 39 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.25 7.87 -51.93 -0.41 -0.16 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -42.72 384.42 -11.39 -54.12 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -7.31 Total: -4.81 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.53 Total: 4.00 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -1.29 Total: -51.24 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.18 Total: -20.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -42.72 -11.39 -54.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268511908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.519 kcal (2) G-P(sol) polarization free energy of solvation -42.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds