Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40474 * 126.86221 * 2 1 4 4 H 0.96993 * 126.64437 * 359.92619 * 3 2 1 5 5 C 1.35151 * 106.70204 * 179.97438 * 3 2 1 6 6 C 1.50703 * 125.53642 * 179.97438 * 5 3 2 7 7 N 1.46906 * 109.47109 * 180.02562 * 6 5 3 8 8 C 1.47474 * 110.99751 * 265.97224 * 7 6 5 9 9 C 1.53514 * 87.93334 * 221.29509 * 8 7 6 10 10 C 1.52994 * 114.34602 * 139.67927 * 9 8 7 11 11 N 1.46503 * 109.46956 * 91.07883 * 10 9 8 12 12 C 1.34777 * 120.00152 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99810 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99937 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.46989 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99879 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00472 * 359.97438 * 16 15 14 18 18 C 1.38804 * 119.99727 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00286 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99551 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47396 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47002 * 119.99893 * 20 18 16 23 23 H 1.48495 * 109.47071 * 239.99541 * 20 18 16 24 24 C 1.47478 * 111.00052 * 169.99720 * 7 6 5 25 25 N 1.30732 * 108.92439 * 0.22780 * 5 3 2 26 26 C 1.34452 * 109.94242 * 359.62320 * 25 5 3 27 27 O 1.21725 * 125.92079 * 180.15581 * 26 25 5 28 28 H 1.09008 * 109.47130 * 90.00295 * 1 2 3 29 29 H 1.09001 * 109.47561 * 209.99907 * 1 2 3 30 30 H 1.08994 * 109.47460 * 330.00357 * 1 2 3 31 31 H 1.08992 * 109.46894 * 59.99836 * 6 5 3 32 32 H 1.09004 * 109.47113 * 299.99986 * 6 5 3 33 33 H 1.08998 * 113.47885 * 336.06194 * 8 7 6 34 34 H 1.09004 * 113.47794 * 106.53057 * 8 7 6 35 35 H 1.08995 * 114.17336 * 272.38170 * 9 8 7 36 36 H 1.08997 * 109.47334 * 211.07535 * 10 9 8 37 37 H 1.08998 * 109.47235 * 331.08071 * 10 9 8 38 38 H 0.97003 * 120.00093 * 0.02562 * 11 10 9 39 39 H 1.08995 * 109.47369 * 300.00388 * 14 12 11 40 40 H 1.08998 * 109.47119 * 60.00368 * 14 12 11 41 41 H 0.97001 * 120.00683 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.47916 * 253.46887 * 24 7 6 43 43 H 1.09005 * 113.47385 * 23.87749 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3076 1.1239 0.0000 4 1 2.0322 2.0539 -0.0010 5 6 3.5763 0.6581 0.0006 6 6 4.8212 1.5074 0.0002 7 7 6.0063 0.6393 0.0005 8 6 6.4898 0.4054 1.3739 9 6 7.9194 0.5694 0.8391 10 6 8.8512 1.3581 1.7613 11 7 9.5378 0.4344 2.6677 12 6 10.4146 0.9077 3.5752 13 8 10.6349 2.0985 3.6418 14 6 11.1214 -0.0426 4.5071 15 16 12.2236 0.8904 5.5983 16 6 12.9000 -0.4288 6.5505 17 1 12.5920 -1.4461 6.3593 18 6 13.8280 -0.1604 7.5473 19 7 14.2031 1.0794 7.7808 20 14 14.5446 -1.5590 8.5573 21 1 13.9641 -2.8474 8.1006 22 1 16.0188 -1.5912 8.3822 23 1 14.2209 -1.3503 9.9914 24 6 7.2339 1.4207 -0.2390 25 7 3.5481 -0.6489 -0.0040 26 6 2.2747 -1.0801 0.0006 27 8 1.9144 -2.2429 0.0009 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 4.8315 2.1372 0.8897 32 1 4.8320 2.1361 -0.8902 33 1 6.1968 1.1858 2.0762 34 1 6.2772 -0.5974 1.7443 35 1 8.3641 -0.3523 0.4640 36 1 9.5875 1.8937 1.1622 37 1 8.2679 2.0717 2.3433 38 1 9.3620 -0.5181 2.6142 39 1 10.3854 -0.5783 5.1066 40 1 11.7045 -0.7561 3.9249 41 1 14.8519 1.2670 8.4770 42 1 7.6519 1.2782 -1.2356 43 1 7.1391 2.4722 0.0319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268511908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = 34.482732 kcal Electronic energy + Delta-G solvation = -25639.138886 eV Core-core repulsion = 21655.625433 eV Total energy + Delta-G solvation = -3983.513453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.33451 -41.32232 -40.26447 -38.49060 -35.95306 -35.24654 -34.57044 -32.95157 -32.24204 -30.89374 -28.60709 -27.65984 -27.03177 -26.75194 -24.30058 -22.73974 -21.97576 -21.79955 -20.60754 -19.76084 -19.40431 -17.82746 -17.76056 -17.52303 -17.15874 -16.90569 -16.86671 -16.60492 -16.31836 -15.96605 -15.87519 -15.61056 -15.03506 -14.59061 -14.52256 -14.39871 -14.21148 -13.86092 -13.65739 -13.47683 -13.21989 -13.14066 -12.89946 -12.73419 -12.59265 -12.39444 -12.19246 -11.91998 -11.68308 -11.40852 -11.14438 -11.08186 -10.95542 -10.87896 -10.25172 -10.03954 -9.79657 -9.65757 -8.63847 -8.33578 -6.10685 0.33603 0.35638 1.29835 1.42100 1.49090 1.60592 1.67636 2.27793 2.29383 2.35782 2.47681 2.97643 3.00687 3.33658 3.35244 3.52496 3.80340 3.89711 3.99209 4.04244 4.16756 4.32119 4.34058 4.35004 4.35904 4.49362 4.55754 4.56368 4.61036 4.68280 4.80479 4.83283 4.94418 4.97279 5.01440 5.29574 5.33943 5.44016 5.56341 6.01033 6.21636 6.27376 6.56852 6.94100 7.07246 7.08308 7.30652 8.75829 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.001595 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.816502 B =17545.748092 C =18323.912188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.445 5.445 3 N -0.470 5.470 4 H 0.469 0.531 5 C 0.410 3.590 6 C 0.083 3.917 7 N -0.472 5.472 8 C 0.005 3.995 9 C -0.119 4.119 10 C 0.134 3.866 11 N -0.713 5.713 12 C 0.534 3.466 13 O -0.566 6.566 14 C -0.132 4.132 15 S -0.149 6.149 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.020 3.980 25 N -0.593 5.593 26 C 0.610 3.390 27 O -0.601 6.601 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.151 0.849 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.415 0.585 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.101 0.899 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.473 5.967 -20.404 34.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.273 5.273 3 N -0.204 5.204 4 H 0.322 0.678 5 C 0.136 3.864 6 C -0.048 4.048 7 N -0.194 5.194 8 C -0.124 4.124 9 C -0.139 4.139 10 C 0.010 3.990 11 N -0.367 5.367 12 C 0.320 3.680 13 O -0.445 6.445 14 C -0.284 4.284 15 S 0.078 5.922 16 C -0.695 4.695 17 H 0.099 0.901 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.108 4.108 25 N -0.343 5.343 26 C 0.309 3.691 27 O -0.478 6.478 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.168 0.832 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.252 0.748 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -27.258 6.108 -20.688 34.760 hybrid contribution -0.616 -1.076 1.211 1.733 sum -27.873 5.032 -19.477 34.375 Atomic orbital electron populations 1.22168 0.71105 1.05941 1.04612 1.49553 1.05952 0.99538 1.72293 1.44841 1.01693 1.03739 1.70099 0.67801 1.24343 0.86383 0.90596 0.85100 1.21761 0.83656 0.91928 1.07485 1.68831 1.00615 1.32136 1.17802 1.24093 0.93744 1.03097 0.91467 1.22855 0.93743 1.00621 0.96654 1.21398 0.94875 0.91935 0.90811 1.45796 1.43138 1.12119 1.35607 1.19967 0.79108 0.88227 0.80701 1.90682 1.64679 1.18058 1.71030 1.23397 1.02385 1.02020 1.00571 1.85492 1.51461 1.14405 1.40837 1.23252 1.29616 0.94597 1.22034 0.90063 1.26088 0.95940 0.99278 0.97707 1.70174 1.31670 1.20748 1.32094 0.84930 0.77911 0.77749 0.77516 1.18217 1.19894 1.19923 1.23896 0.88822 0.97642 1.00446 1.71867 1.18753 1.10578 1.33147 1.18715 0.84405 0.85058 0.80969 1.90890 1.79732 1.17189 1.59941 0.89822 0.89577 0.86318 0.86274 0.83159 0.89474 0.91031 0.87189 0.91486 0.91474 0.74831 0.87456 0.87406 0.91989 0.88087 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.46 127.77 1.46 2.08 16 2 N -0.45 -6.34 4.06 -500.02 -2.03 -8.37 16 3 N -0.47 -2.56 7.36 -50.36 -0.37 -2.93 16 4 H 0.47 -2.42 8.96 -213.09 -1.91 -4.33 16 5 C 0.41 4.52 8.02 138.03 1.11 5.63 16 6 C 0.08 0.26 5.44 85.56 0.47 0.72 16 7 N -0.47 -4.77 6.03 -932.42 -5.62 -10.39 16 8 C 0.00 0.06 7.29 83.58 0.61 0.66 16 9 C -0.12 -1.31 4.08 -10.45 -0.04 -1.36 16 10 C 0.13 2.27 5.59 86.38 0.48 2.75 16 11 N -0.71 -16.15 5.56 -463.07 -2.57 -18.73 16 12 C 0.53 18.73 7.85 87.66 0.69 19.42 16 13 O -0.57 -24.94 15.86 -3.02 -0.05 -24.99 16 14 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 15 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 16 C -0.55 -31.28 9.50 67.96 0.65 -30.63 16 17 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 18 C 0.01 0.84 5.49 84.86 0.47 1.30 16 19 N -0.91 -55.70 13.22 21.65 0.29 -55.41 16 20 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 C 0.02 0.13 7.26 83.58 0.61 0.73 16 25 N -0.59 -14.20 10.83 -316.04 -3.42 -17.62 16 26 C 0.61 16.57 8.97 179.09 1.61 18.18 16 27 O -0.60 -22.29 17.91 -4.43 -0.08 -22.37 16 28 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 30 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.12 -0.29 7.30 -2.39 -0.02 -0.31 16 32 H 0.15 -0.55 8.08 -2.38 -0.02 -0.57 16 33 H 0.09 0.76 7.16 -2.39 -0.02 0.75 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.18 7.82 -2.39 -0.02 1.16 16 38 H 0.42 7.12 8.47 -92.71 -0.79 6.33 16 39 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 40 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 41 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 42 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.10 0.17 7.87 -2.38 -0.02 0.15 16 Total: -1.00 -100.62 384.42 -6.09 -106.71 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -1.63 Total: 2.94 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 8.54 Total: 14.76 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -13.73 Total: -113.45 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -0.13 Total: -47.36 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -100.62 -6.09 -106.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268511908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.190 kcal (2) G-P(sol) polarization free energy of solvation -100.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds