Wall clock time and date at job start Sat Apr 11 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99958 * 2 1 4 4 C 1.53001 * 109.46822 * 66.04544 * 3 2 1 5 5 C 1.53002 * 109.47012 * 179.97438 * 4 3 2 6 6 N 1.46495 * 109.47024 * 180.02562 * 5 4 3 7 7 C 1.46507 * 119.99737 * 269.99883 * 6 5 4 8 8 C 1.34772 * 120.00028 * 90.00107 * 6 5 4 9 9 O 1.21622 * 120.00216 * 1.55081 * 8 6 5 10 10 C 1.47174 * 119.99878 * 181.54592 * 8 6 5 11 11 C 1.38247 * 128.47670 * 172.41584 * 10 8 6 12 12 N 1.31242 * 111.88902 * 180.26867 * 11 10 8 13 13 N 1.27333 * 120.03756 * 359.50812 * 12 11 10 14 14 S 1.56634 * 109.74274 * 0.48436 * 13 12 11 15 15 C 1.46904 * 110.99749 * 236.04860 * 2 1 3 16 16 C 1.50695 * 109.47276 * 293.95104 * 15 2 1 17 17 O 1.21296 * 119.99958 * 0.02562 * 16 15 2 18 18 N 1.34772 * 120.00241 * 180.02562 * 16 15 2 19 19 C 1.37097 * 120.00422 * 180.02562 * 18 16 15 20 20 H 1.08008 * 119.99601 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00546 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00529 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99560 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47211 * 90.00443 * 23 21 19 25 25 H 1.48506 * 109.46894 * 210.00583 * 23 21 19 26 26 H 1.48508 * 109.47272 * 330.00018 * 23 21 19 27 27 H 1.08998 * 109.47406 * 59.99893 * 1 2 3 28 28 H 1.09008 * 109.46871 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47044 * 299.99314 * 1 2 3 30 30 H 1.08996 * 109.46758 * 306.04862 * 3 2 1 31 31 H 1.09000 * 109.47155 * 186.04906 * 3 2 1 32 32 H 1.08999 * 109.47006 * 60.00084 * 4 3 2 33 33 H 1.09000 * 109.47551 * 300.00119 * 4 3 2 34 34 H 1.08999 * 109.47140 * 60.00198 * 5 4 3 35 35 H 1.09000 * 109.47086 * 300.00436 * 5 4 3 36 36 H 1.08998 * 109.46934 * 263.76626 * 7 6 5 37 37 H 1.09002 * 109.47014 * 23.76997 * 7 6 5 38 38 H 1.08997 * 109.46803 * 143.77138 * 7 6 5 39 39 H 1.07996 * 124.05342 * 0.02562 * 11 10 8 40 40 H 1.08996 * 109.47353 * 53.95764 * 15 2 1 41 41 H 1.09000 * 109.46880 * 173.95083 * 15 2 1 42 42 H 0.96997 * 119.99885 * 359.97438 * 18 16 15 43 43 H 0.97001 * 120.00083 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1802 3.4856 1.3186 6 7 1.8322 4.1422 2.5811 7 6 0.5757 4.8866 2.6975 8 6 2.6679 4.0615 3.6354 9 8 3.7239 3.4675 3.5302 10 6 2.3025 4.6923 4.9139 11 6 2.9469 4.6004 6.1335 12 7 2.3345 5.2944 7.0640 13 7 1.2819 5.9521 6.7797 14 16 0.9275 5.7553 5.2667 15 6 1.9954 -0.7660 -1.1377 16 6 1.6370 -2.2204 -0.9730 17 8 1.0047 -2.5832 -0.0035 18 7 2.0189 -3.1180 -1.9029 19 6 1.6923 -4.4411 -1.7534 20 1 1.1293 -4.7641 -0.8901 21 6 2.0865 -5.3667 -2.7118 22 7 1.7731 -6.6348 -2.5687 23 14 3.0608 -4.8081 -4.2045 24 1 4.5130 -4.8753 -3.9013 25 1 2.7540 -5.6944 -5.3559 26 1 2.6899 -3.4105 -4.5431 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.5611 1.9273 -0.8309 31 1 3.0797 1.3444 -0.1083 32 1 2.0658 1.5015 2.1492 33 1 0.5471 2.0844 1.4266 34 1 1.7463 4.0418 0.4877 35 1 3.2645 3.4582 1.2105 36 1 0.7633 5.9457 2.5213 37 1 -0.1359 4.5159 1.9597 38 1 0.1651 4.7519 3.6981 39 1 3.8443 4.0234 6.3014 40 1 1.5611 -0.3872 -2.0628 41 1 3.0797 -0.6610 -1.1757 42 1 2.5241 -2.8279 -2.6784 43 1 2.0479 -7.2809 -3.2380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273488521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:51 Heat of formation + Delta-G solvation = 31.669955 kcal Electronic energy + Delta-G solvation = -26324.132840 eV Core-core repulsion = 22340.497416 eV Total energy + Delta-G solvation = -3983.635424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27829 -40.28506 -38.82591 -37.10639 -36.13417 -33.96511 -33.09739 -31.89846 -31.64893 -28.45704 -28.17633 -27.65692 -26.29486 -24.89792 -23.61472 -22.31005 -20.87571 -20.26147 -19.58380 -19.33247 -18.23651 -17.70923 -16.97690 -16.63075 -16.10744 -15.69425 -15.67025 -15.39959 -14.98283 -14.85104 -14.55650 -14.29366 -13.80187 -13.76122 -13.52316 -13.34014 -13.11197 -13.03734 -12.52335 -12.44060 -12.38665 -12.11804 -11.94641 -11.73053 -11.39717 -11.33109 -11.02677 -10.71954 -10.63762 -10.59721 -10.57288 -10.46014 -10.24290 -9.97373 -9.53589 -9.31069 -8.57122 -8.17629 -7.96072 -6.30627 -3.81968 -0.75725 0.27610 1.00661 1.51558 2.22961 2.47513 3.02056 3.07035 3.14971 3.50923 3.74324 3.84159 3.91963 4.10502 4.22503 4.27678 4.58922 4.64888 4.77850 4.91078 4.95268 5.02411 5.11675 5.17034 5.22702 5.29940 5.46847 5.55962 5.61705 5.76220 5.81560 5.87074 5.93368 5.95632 6.15559 6.48787 6.61118 7.15419 7.18756 7.30531 7.45477 7.59219 8.15268 8.60938 8.95952 9.43087 9.84389 10.82516 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.027447 B = 0.001740 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.899998 B =16087.004237 C =16212.056786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.133 4.133 5 C 0.118 3.882 6 N -0.605 5.605 7 C 0.064 3.936 8 C 0.599 3.401 9 O -0.507 6.507 10 C -0.291 4.291 11 C 0.075 3.925 12 N -0.251 5.251 13 N -0.277 5.277 14 S 0.434 5.566 15 C 0.043 3.957 16 C 0.453 3.547 17 O -0.559 6.559 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 H 0.014 0.986 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.216 0.784 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.370 0.630 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 30.113 7.290 31.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.171 4.171 5 C -0.004 4.004 6 N -0.339 5.339 7 C -0.082 4.082 8 C 0.384 3.616 9 O -0.382 6.382 10 C -0.431 4.431 11 C -0.091 4.091 12 N -0.115 5.115 13 N -0.258 5.258 14 S 0.570 5.430 15 C -0.088 4.088 16 C 0.238 3.762 17 O -0.441 6.441 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 H 0.032 0.968 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.233 0.767 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.203 0.797 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.416 30.274 9.134 31.714 hybrid contribution 1.536 -0.263 -2.373 2.838 sum -0.880 30.011 6.762 30.776 Atomic orbital electron populations 1.22577 0.86743 1.04524 0.98872 1.61514 1.08740 1.11464 1.42550 1.22024 1.00432 0.88818 0.95733 1.21955 1.01507 0.94339 0.99343 1.21611 1.02550 0.93008 0.83204 1.47648 1.20564 1.52927 1.12728 1.22162 0.86309 0.97101 1.02607 1.16540 0.84014 0.79773 0.81279 1.90896 1.22916 1.42009 1.82422 1.28033 1.03950 1.10324 1.00838 1.24528 1.01279 0.97425 0.85898 1.70849 1.02621 1.07503 1.30506 1.78690 1.12482 1.19770 1.14813 1.82928 1.22046 1.31234 1.06771 1.21895 1.00834 0.93999 0.92075 1.19652 0.85080 0.86479 0.84952 1.90527 1.42619 1.79959 1.30969 1.42213 1.51066 1.08380 1.21467 1.19425 1.33756 0.80329 1.09757 0.86286 1.25038 0.97904 0.95138 0.98129 1.69620 1.45690 1.01150 1.35723 0.86673 0.80955 0.78653 0.83087 1.19587 1.20223 1.19565 0.96783 0.88623 0.92047 0.95058 0.90589 0.90214 0.91476 0.89800 0.88961 0.90925 0.88361 0.91694 0.76730 0.93395 0.89226 0.79741 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.96 60.07 0.54 0.85 16 2 N -0.52 -8.03 4.50 -244.37 -1.10 -9.13 16 3 C 0.06 0.64 4.96 -3.82 -0.02 0.62 16 4 C -0.13 -1.26 5.46 -26.73 -0.15 -1.40 16 5 C 0.12 0.83 5.39 -4.04 -0.02 0.81 16 6 N -0.61 -4.16 2.87 -182.95 -0.53 -4.69 16 7 C 0.06 0.21 9.09 59.85 0.54 0.75 16 8 C 0.60 5.60 7.67 -12.63 -0.10 5.50 16 9 O -0.51 -6.55 16.55 5.26 0.09 -6.46 16 10 C -0.29 -2.28 6.50 -35.95 -0.23 -2.51 16 11 C 0.08 0.63 11.56 -17.80 -0.21 0.42 16 12 N -0.25 -2.47 11.54 30.36 0.35 -2.12 16 13 N -0.28 -2.53 12.51 60.35 0.75 -1.78 16 14 S 0.43 2.42 19.06 -107.50 -2.05 0.38 16 15 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 16 C 0.45 10.22 7.47 -10.99 -0.08 10.14 16 17 O -0.56 -14.84 13.91 5.54 0.08 -14.76 16 18 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 19 C -0.30 -8.57 10.16 -14.93 -0.15 -8.73 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 23 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.10 1.81 5.82 -51.92 -0.30 1.51 16 29 H 0.06 0.79 6.47 -51.93 -0.34 0.46 16 30 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 31 H 0.08 0.80 7.93 -51.93 -0.41 0.38 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 34 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 35 H 0.09 0.76 7.40 -51.93 -0.38 0.38 16 36 H 0.07 0.10 8.00 -51.93 -0.42 -0.31 16 37 H 0.10 0.18 8.02 -51.93 -0.42 -0.24 16 38 H 0.07 0.20 4.55 -25.12 -0.11 0.09 16 39 H 0.22 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 41 H 0.09 1.30 7.93 -51.93 -0.41 0.88 16 42 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -36.43 369.43 -6.29 -42.72 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.45 Total: 6.62 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 0.00 Total: 8.15 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.20 Total: -56.78 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.16 Total: -21.22 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.05 Total: 0.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.43 -6.29 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273488521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.391 kcal (2) G-P(sol) polarization free energy of solvation -36.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds