Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.00195 * 2 1 4 4 C 1.54320 * 109.88346 * 121.10036 * 2 1 3 5 5 C 1.55166 * 102.94092 * 141.60786 * 4 2 1 6 6 H 1.08996 * 111.03522 * 82.58535 * 5 4 2 7 7 N 1.46900 * 111.00244 * 206.42260 * 5 4 2 8 8 C 1.46900 * 110.99904 * 198.65030 * 7 5 4 9 9 C 1.50697 * 109.47148 * 179.97438 * 8 7 5 10 10 N 1.30890 * 125.91503 * 274.98110 * 9 8 7 11 11 C 1.33539 * 109.78191 * 180.02562 * 10 9 8 12 12 O 1.35865 * 125.58642 * 180.02562 * 11 10 9 13 13 N 1.31071 * 108.82596 * 0.25685 * 11 10 9 14 14 N 1.34359 * 125.90951 * 95.01362 * 9 8 7 15 15 H 0.96996 * 126.77526 * 359.97267 * 14 9 8 16 16 C 1.54910 * 101.58184 * 324.49760 * 5 4 2 17 17 N 1.47024 * 109.87961 * 238.90889 * 2 1 3 18 18 C 1.34777 * 125.65270 * 61.67782 * 17 2 1 19 19 O 1.21288 * 119.99286 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00500 * 179.97438 * 18 17 2 21 21 S 1.81002 * 109.47273 * 179.97438 * 20 18 17 22 22 C 1.76198 * 100.00066 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99648 * 0.02562 * 22 21 20 24 24 C 1.38791 * 120.00010 * 179.97438 * 22 21 20 25 25 N 1.31633 * 120.00239 * 0.02562 * 24 22 21 26 26 Si 1.86809 * 119.99942 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46960 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.46854 * 120.00395 * 26 24 22 29 29 H 1.48498 * 109.46972 * 240.00114 * 26 24 22 30 30 H 1.08997 * 109.47472 * 179.63810 * 1 2 3 31 31 H 1.09001 * 109.46864 * 299.63761 * 1 2 3 32 32 H 1.09006 * 109.47404 * 59.63858 * 1 2 3 33 33 H 1.09000 * 110.72108 * 23.24706 * 4 2 1 34 34 H 1.08998 * 110.71766 * 259.97038 * 4 2 1 35 35 H 1.00900 * 110.99821 * 74.69508 * 7 5 4 36 36 H 1.08997 * 109.47217 * 60.00053 * 8 7 5 37 37 H 1.09000 * 109.47002 * 300.00234 * 8 7 5 38 38 H 0.96700 * 114.00317 * 89.99725 * 12 11 10 39 39 H 1.08999 * 110.36805 * 155.84714 * 16 5 4 40 40 H 1.09003 * 110.36666 * 278.06307 * 16 5 4 41 41 H 1.08993 * 109.47109 * 300.00102 * 20 18 17 42 42 H 1.09001 * 109.46774 * 60.00133 * 20 18 17 43 43 H 0.96996 * 120.00230 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2426 5 6 3.2876 -1.5143 0.6921 6 1 4.1658 -0.8695 0.6601 7 7 3.5539 -2.7230 1.4835 8 6 4.9266 -3.2004 1.2696 9 6 5.1625 -4.4382 2.0962 10 7 5.5301 -4.4642 3.3521 11 6 5.6448 -5.7295 3.7633 12 8 6.0078 -6.1255 5.0113 13 7 5.3545 -6.5269 2.7644 14 7 5.0324 -5.7061 1.6712 15 1 4.7712 -5.9972 0.7836 16 6 2.8144 -1.8794 -0.7370 17 7 2.0299 -0.7140 -1.1840 18 6 1.8084 -0.3612 -2.4658 19 8 1.1450 0.6224 -2.7179 20 6 2.3851 -1.1886 -3.5856 21 16 1.9144 -0.4633 -5.1758 22 6 2.6992 -1.5966 -6.2732 23 1 3.2598 -2.4308 -5.8778 24 6 2.5961 -1.4179 -7.6457 25 7 1.9125 -0.4015 -8.1276 26 14 3.4276 -2.6199 -8.8091 27 1 4.1273 -3.6669 -8.0222 28 1 2.4049 -3.2552 -9.6784 29 1 4.4111 -1.8932 -9.6517 30 1 -0.3634 -1.0276 -0.0065 31 1 -0.3633 0.5082 0.8932 32 1 -0.3634 0.5195 -0.8868 33 1 1.3051 -1.4461 1.6181 34 1 2.3529 -0.0461 2.0200 35 1 2.8827 -3.4469 1.2749 36 1 5.6317 -2.4247 1.5683 37 1 5.0696 -3.4347 0.2148 38 1 5.2651 -6.2364 5.6204 39 1 3.6715 -2.0338 -1.3926 40 1 2.1901 -2.7726 -0.7134 41 1 3.4716 -1.2068 -3.5015 42 1 1.9985 -2.2057 -3.5219 43 1 1.8407 -0.2764 -9.0868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278348660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = 27.313528 kcal Electronic energy + Delta-G solvation = -26472.041629 eV Core-core repulsion = 22488.217296 eV Total energy + Delta-G solvation = -3983.824333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.70006 -40.26219 -38.11518 -37.76373 -35.70066 -32.78862 -32.49485 -32.26001 -31.97849 -29.71830 -28.78256 -26.29171 -25.88342 -25.53895 -23.01764 -22.30001 -21.69587 -21.17937 -19.15735 -18.96535 -18.12400 -17.74655 -17.24257 -16.69330 -16.27157 -16.17988 -15.17648 -14.98912 -14.86880 -14.70940 -14.36334 -14.30929 -13.95894 -13.71113 -13.33982 -13.16719 -13.00477 -12.69606 -12.64356 -12.49170 -12.31495 -12.05902 -11.91868 -11.73007 -11.14401 -11.11414 -11.07753 -10.93697 -10.81822 -10.62753 -10.39390 -10.12741 -9.87470 -9.50382 -9.13744 -9.08973 -8.61044 -8.30097 -6.57257 -6.28069 -3.99212 0.90232 1.84480 2.12486 2.78032 2.90614 2.98031 3.16284 3.19400 3.25353 3.44648 3.64462 3.89066 4.08218 4.13366 4.28753 4.33722 4.58905 4.74760 4.88799 4.91316 4.98685 5.03304 5.07208 5.22757 5.33039 5.36370 5.39819 5.53504 5.57425 5.58783 5.63259 5.68606 5.78945 6.01141 6.02243 6.21783 6.26139 6.42776 6.47058 6.60968 6.94467 7.48200 7.52658 7.58011 8.28376 8.48577 9.17241 10.79352 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.002385 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.668361 B =11739.131820 C =14046.484251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.077 0.923 4 C -0.113 4.113 5 C 0.077 3.923 6 H 0.104 0.896 7 N -0.664 5.664 8 C 0.132 3.868 9 C 0.307 3.693 10 N -0.527 5.527 11 C 0.403 3.597 12 O -0.440 6.440 13 N -0.309 5.309 14 N -0.465 5.465 15 H 0.447 0.553 16 C 0.072 3.928 17 N -0.620 5.620 18 C 0.549 3.451 19 O -0.510 6.510 20 C -0.147 4.147 21 S -0.059 6.059 22 C -0.535 4.535 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.866 5.866 26 Si 0.919 3.081 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.279 1.279 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.346 0.654 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.409 0.591 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 -8.076 23.701 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.034 4.034 6 H 0.122 0.878 7 N -0.295 5.295 8 C 0.001 3.999 9 C 0.028 3.972 10 N -0.264 5.264 11 C 0.084 3.916 12 O -0.240 6.240 13 N -0.152 5.152 14 N -0.188 5.188 15 H 0.294 0.706 16 C -0.055 4.055 17 N -0.358 5.358 18 C 0.337 3.663 19 O -0.383 6.383 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.501 5.501 26 Si 0.745 3.255 27 H -0.197 1.197 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.166 0.834 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.267 0.733 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.775 -6.650 23.923 25.115 hybrid contribution 0.638 -2.613 -1.696 3.180 sum 4.413 -9.263 22.227 24.481 Atomic orbital electron populations 1.22135 0.94663 1.02209 1.03069 1.21554 0.94903 0.96559 0.83925 0.90514 1.22720 0.96584 0.99275 0.96568 1.22848 0.99500 0.91633 0.89416 0.87786 1.60449 1.02223 1.08138 1.58715 1.20547 0.93173 0.90929 0.95277 1.23977 0.94812 0.87731 0.90711 1.70297 1.23537 1.22307 1.10308 1.21191 0.96588 0.85888 0.87977 1.84918 1.35299 1.87867 1.15937 1.78250 1.25212 1.16041 0.95676 1.47842 1.53090 1.04479 1.13418 0.70620 1.23032 0.95878 0.89888 0.96653 1.48478 1.53917 1.28325 1.05039 1.20015 0.79829 0.85058 0.81362 1.90707 1.38372 1.26811 1.82436 1.23513 1.03494 1.02563 1.00203 1.85440 1.69568 1.37737 0.90506 1.22872 1.38293 1.14106 0.93091 0.90975 1.24997 0.95226 0.95991 0.97377 1.70022 1.38418 1.28062 1.13636 0.86118 0.79038 0.80210 0.80121 1.19673 1.20534 1.20509 0.92701 0.91886 0.90808 0.89970 0.89431 0.83441 0.86374 0.91591 0.73317 0.90352 0.91553 0.89482 0.89542 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.10 37.16 0.34 -1.47 16 2 C 0.13 1.42 3.46 -66.95 -0.23 1.19 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.11 -0.79 6.18 -24.89 -0.15 -0.95 16 5 C 0.08 0.48 3.32 -65.56 -0.22 0.26 16 6 H 0.10 0.63 7.92 -51.93 -0.41 0.22 16 7 N -0.66 -3.44 6.36 -105.72 -0.67 -4.12 16 8 C 0.13 0.62 6.18 -4.98 -0.03 0.59 16 9 C 0.31 2.22 7.74 -155.71 -1.21 1.02 16 10 N -0.53 -5.37 11.21 -12.10 -0.14 -5.50 16 11 C 0.40 4.09 9.46 -91.25 -0.86 3.23 16 12 O -0.44 -3.63 13.66 -19.32 -0.26 -3.90 16 13 N -0.31 -3.04 12.81 29.18 0.37 -2.67 16 14 N -0.47 -3.08 7.44 32.62 0.24 -2.84 16 15 H 0.45 1.49 8.96 -182.34 -1.63 -0.14 16 16 C 0.07 0.59 6.27 -2.53 -0.02 0.58 16 17 N -0.62 -7.86 3.06 -163.02 -0.50 -8.36 16 18 C 0.55 9.87 7.66 -10.99 -0.08 9.78 16 19 O -0.51 -11.18 14.90 5.55 0.08 -11.10 16 20 C -0.15 -2.84 5.16 36.00 0.19 -2.65 16 21 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 22 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 23 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 24 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 25 N -0.87 -25.64 13.22 55.49 0.73 -24.90 16 26 Si 0.92 20.88 29.55 -169.99 -5.02 15.85 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.07 6.88 -51.93 -0.36 0.71 16 33 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.35 1.55 8.30 -39.29 -0.33 1.22 16 36 H 0.12 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.41 1.14 9.06 45.56 0.41 1.55 16 39 H 0.08 0.63 7.47 -51.93 -0.39 0.24 16 40 H 0.07 0.49 7.80 -51.93 -0.41 0.08 16 41 H 0.09 1.54 7.85 -51.92 -0.41 1.13 16 42 H 0.09 1.55 8.14 -51.91 -0.42 1.12 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -38.13 378.80 -10.17 -48.30 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.43 Total: -1.72 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.08 Total: -0.99 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.04 Total: -48.39 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.18 Total: -15.00 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.13 -10.17 -48.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.615 kcal (2) G-P(sol) polarization free energy of solvation -38.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds